LOCUS       CP098953                2096 bp    DNA     circular BCT 13-APR-2023
DEFINITION  Escherichia coli strain RHB47-C06 plasmid unnamed6, complete
            sequence.
ACCESSION   CP098953
VERSION     CP098953.1
DBLINK      BioProject: PRJNA605147
            BioSample: SAMN15488720
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Matlock,W.
  TITLE     Plasmid overlap and evolution between Enterobacterales isolates from
            bloodstream infections and non-human compartments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Matlock,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2022) Nuffield Department of Medicine, University
            of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.4
            Assembly Name                     :: RHB47-C06
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 77x
            Sequencing Technology             :: Illumina/Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/15/2022 18:11:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,839
            CDSs (total)                      :: 4,721
            Genes (coding)                    :: 4,579
            CDSs (with protein)               :: 4,579
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 142
            CDSs (without protein)            :: 142
            Pseudo Genes (ambiguous residues) :: 0 of 142
            Pseudo Genes (frameshifted)       :: 57 of 142
            Pseudo Genes (incomplete)         :: 82 of 142
            Pseudo Genes (internal stop)      :: 38 of 142
            Pseudo Genes (multiple problems)  :: 31 of 142
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="RHB47-C06"
                     /isolation_source="Pooled faeces sample collected from
                     floor of poultry farm"
                     /db_xref="taxon:562"
                     /plasmid="unnamed6"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
     gene            complement(join(1929..2096,1..822))
                     /locus_tag="NFL56_24190"
     CDS             complement(join(1929..2096,1..822))
                     /locus_tag="NFL56_24190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WGC08960.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          complement(1846..1927)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.59"
                     /coverage="90.0"
                     /evalue="3.37e-32"
     Typing          2012..2096
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.674"
                     /coverage="100.0"
                     /evalue="1.86e-33"
ORIGIN
        1 gccgccggtc gccacaaagc ggcgcttgtg cgtctggcgg gtcagttcga ggaaccattc
       61 aggatcggcc accatgtcag ccggcttcgt ggaatatttc agggtttcgg ccaccgcacc
      121 gcgcaccagt tcggcggtcg cgcaggccag cgattcgccg cccttcggct tacgaggttt
      181 cactgcccgg acatcaacat tcgggtcata atcgacccgc agacactccc gccagagttc
      241 aacccagcgt tcatgcctga cgtaactttt cccatttagc atgccaggcg gcaccatcat
      301 cagggtgtgg aagtgcgggt gtgcgctgcc gtcgctcccg cgggtgactt ccgtggtacg
      361 tatccagccc tgcacaggcc ggaactcctt gcgaaccttc atgcgctgaa aagctgcatt
      421 catccggttc agcatctcgc ccagctcccc gatcgcacag ttgcgcacgg tcagagtcag
      481 gaacatccag cgggcatcgg gataatccgc cacgatacgc ggcagggact ggtagaaacg
      541 ggcttgccac atcagggagc gcctccactg gcagacagga caatgccgga cacggcagaa
      601 atgcgcctca cgcagcctca gacgcgtttc tccggtttcc ttgagggtag accacccgaa
      661 acgcagtaaa ccaccacaga gggccatacg cgccccgtag cgctcatatt cggctgcaag
      721 caggtaaatc cctcccacgt catcagaaac gcttctgtga gcgtcccagg gcgcatctga
      781 gggggaatag tccgtgaggt tctggagatc agggtttttc atgcgcacca cccgatagtg
      841 ggcgatggct catctgacgt gttatcattg ccatatcacc tgttgtgtta gtcgtatcac
      901 caattcgaat tcctacaggt ggtcacaccc ccgaacgatt gccctcgttg cgggggtcgc
      961 ttttaatgcg accactcccg acagaataac tccaaaacca ttttccgaca aatccccctt
     1021 caggccttgc ggcacaaggg ctggaggcga atttgaatcc tagagttatc ccttaagtat
     1081 aaatacaagg atcgcgcgcg agattcgctt gaattttgag cgggattttc agtaacccaa
     1141 aacacccaac cccacccact tacacccatc tcatccacag actttcaccc cgattttgtg
     1201 aacaacaaaa aaaaccgtct tgcaggtggt tggtctcact gcgtgacacc aaccaccatc
     1261 cccagtgttt ttcccgtgcc gtcgtcaatc acaaaatcgg aacccacgcc ggaggcgcgg
     1321 gcccccgcga ttttctgttt gacgaatcag ggaacggtga acggtacgcg gaattttttc
     1381 gcgttccgtg aggcgttggc ggggtgtcgg ggcgcagtcc tgaccaggtt cgtagaaccg
     1441 cacagggttg caaaggggtg tcccctttgg cacaagcgac ggagcgaaac gccccgtttt
     1501 gtgtacgccg cttatcgtgc ctgtgtttta ggagaacaaa aaaatgccgt gcatacagcc
     1561 cacacaatga cccacataat cacccacaac tcaaaacaca cagcccacac aatcacccac
     1621 actttaaccc acaaaaaaga ccacaacccc attgacaccc cacaaaacaa cccacacaaa
     1681 cggcgagtaa atcattttgc cgttttcgtg ccgcagccgt tccgcgcaat cgacaaactg
     1741 gcagtcaggg aatctcacga agtgcgcact tatacaaact caccttaggt tcgtttgtcg
     1801 tgcggtctgc gacgctcaaa aaaccgagaa acggcgggaa ttttcgggac aggatgtgca
     1861 attgtaatac cgtcacacgc gacgctatca caattgccat ctggtcaggg ctgcgccccg
     1921 acaccccgct agcctgattc agttttatct ttcgtcggtg agcgacggta ctttctgacc
     1981 tcggttttcc actcgaacgc gattcgtgaa ccgtcatcgt cgccctcgga aatatcatca
     2041 ccgatcacca tgtcggcgtc agtttcctga tcgagtttca gcacgtcttt gagtgc
//
