LOCUS       CP097877                1005 bp    DNA     circular BCT 13-JUN-2022
DEFINITION  Acinetobacter baumannii strain R6-1 plasmid pISAba1_circular,
            complete sequence.
ACCESSION   CP097877
VERSION     CP097877.1
DBLINK      BioProject: PRJNA734772
            BioSample: SAMN19523479
KEYWORDS    .
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Chen,K. and Liu,C.
  TITLE     Epidemiological and Genetic Characteristics of Clinical
            Carbapenem-Resistant Acinetobacter baumannii from ICUs in Hospitals
            Countrywide in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Liu,C. and Zhang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUN-2021) Infectious Disease and Public Health, City
            University of Hong Kong, Tat Chee Road, Kowloon Tong, KLN, Hongkong
            999077, China
REFERENCE   3  (bases 1 to 1005)
  AUTHORS   Chen,K. and Liu,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2022) Infectious Disease and Public Health, City
            University of Hong Kong, Tat Chee Road, Kowloon Tong, KLN, Hongkong
            999077, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JAN-2020
            Assembly Method                   :: Unicycler v. 0.4.9b
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Nanopore; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/26/2022 12:11:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 3,860
            CDSs (total)                      :: 3,764
            Genes (coding)                    :: 3,672
            CDSs (with protein)               :: 3,672
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 38 of 92
            Pseudo Genes (incomplete)         :: 48 of 92
            Pseudo Genes (internal stop)      :: 20 of 92
            Pseudo Genes (multiple problems)  :: 13 of 92
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="R6-1"
                     /isolation_source="Hospital_ICU"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pISAba1_circular"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="30.28 N 120.15 E"
                     /collection_date="2018"
                     /collected_by="Liu congcong"
     gene            complement(join(931..1005,1..390))
                     /locus_tag="KSA15_000005"
     CDS             complement(join(931..1005,1..390))
                     /locus_tag="KSA15_000005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_function:
                     GO:0004803 - transposase activity [Evidence IEA];
                     GO_process: GO:0006313 - transposition, DNA-mediated
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="USC18470.1"
                     /translation="MKLYISALQLENGELLLVVSPQFNANAIQDYALRWEIETLFSCLK
                     GRGFNLENTRLTDPRRVKKLIAVLAISFCWCYLTGEWQHDQKKAIKIKKHGRLSMSLFR
                     YGLDYVQMAIQRLIGFGKKEEFKEILSKMEQVTFKVLCAHHACDYFKANM"
                     /name="transposase"
ORIGIN
        1 caaaatttcc ttaaactctt cttttttccc aaaaccaatt aaacgctgaa tcgccatttg
       61 aacatagtct aaaccatagc gaaataaact cattgagagt cgtccatgct tctttatttt
      121 tatcgctttt ttttgatcat gttgccattc acccgttaag taacaccaac agaagcttat
      181 agctaacacc gcaatcaatt ttttcactcg tctagggtct gtcaagcgcg tattttcaag
      241 attaaacccg cgtcctttga gacaactgaa taaggtttca atttcccagc gtaatgcata
      301 atcctgaata gcattggcat taaactgagg agaaacgacg agtaaaagct ctccattttc
      361 taactgtagt gcacttatat atagtttcac ccgaccaacc aaaatccgtc gtttacgaca
      421 ttcaatttga ccaactttaa gatggcgaaa taaatcacta attttatgat tctttcctaa
      481 atgattggtg acaatgaagt ttttttaaca cgaatgcaga agttgatgtc ttgttcaatt
      541 aaccatgtaa accactgctc accgataaac tctctgtctg cgaacacatt cacaatacgg
      601 tctttaccaa aaatggctat aaagcgttga atcaaagcaa tacgctcttt cgtatctgaa
      661 tttccacgtt tattaagcaa tgtccaaagg ataggtatcg ctattccacg ataaacgatt
      721 gcgagcatca ggatattaat atttcgtttt ccccatttcc aattggttct atctaaagtc
      781 agttgcactt ggtcgaatga aaacatattg aaaatcaact gagaaatttg acgataatca
      841 aaatactgac ctgcaaagaa gcgctgcata cgtcgataaa atgattgtgg taagcacttg
      901 atgggcaagg ctttagatgc agaagaaaga ttacatgttt gctttaaaat aatcacaagc
      961 atgatgagcg caaagcactt taaatgtgac ttgttccatt ttaga
//
