LOCUS       CP093148                2096 bp    DNA     circular BCT 06-APR-2022
DEFINITION  Salmonella enterica strain PNUSAS060563 plasmid pPNUSAS060563_1,
            complete sequence.
ACCESSION   CP093148
VERSION     CP093148.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN10601908
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., Miller,E.A., Johnson,T.J., de la
            Cruz,F., Penil-Celis,A. and Folster,J.P.
  TITLE     Five complete Salmonella enterica serotype Reading genomes recovered
            from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 2096)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., Miller,E.A., Johnson,T.J., de la
            Cruz,F., Penil-Celis,A. and Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 85x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/05/2022 08:44:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,560
            CDSs (total)                      :: 4,441
            Genes (coding)                    :: 4,303
            CDSs (with protein)               :: 4,303
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 63 of 138
            Pseudo Genes (incomplete)         :: 96 of 138
            Pseudo Genes (internal stop)      :: 31 of 138
            Pseudo Genes (multiple problems)  :: 46 of 138
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS060563"
                     /db_xref="taxon:28901"
                     /plasmid="pPNUSAS060563_1"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(314..1303)
                     /locus_tag="EKH94_22800"
     CDS             complement(314..1303)
                     /locus_tag="EKH94_22800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UOH27008.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          complement(231..312)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          397..588
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 cccacacttt aacccacaaa aaagaccaca accccattga caccccacaa aacaacccac
       61 acaaacggcg agtaaatcat tttgccgttt tcgtgccgca gccgttccgc gcaatcgaca
      121 aactggcagt cagggaatct cacgaagtgc gcacttatac aaactcacct taggttcgtt
      181 tgtcgtgcgg tctgcgacgc tcaaaaaacc gagaaacggc gggaattttc gggacaggat
      241 gtgtaattgt aataccgtca cacgcgacgc tatcacaatt gccatctggt caggggtgca
      301 ccccgacacc ccgctagcct gattcagttt tatctttcgt cggtgagcga cggtactttc
      361 tgacctcggt tttccactcg aacgcgattc gtgaaccgtc atcgtcgccc tcggaaatat
      421 catcaccgat caccatgtcg gcgtcagttt cctgatcgag tttcagcacg tctttgagtg
      481 cgccgccggt cgccacaaag cggcgcttgt gcgtctggcg ggtcagttcg aggaaccatt
      541 caggatcggc caccatgtca gccggcttcg tggaatattt cagggtttcg gccaccgcac
      601 cgcgcaccag ttcggcggtc gcgcaggcca gcgattcgcc gcccttcggc ttacgaggtt
      661 tcactgcccg gacatcaaca ttcgggtcat aatcgacccg cagacactcc cgccagagtt
      721 caacccagcg ttcatgcctg acgtaacttt tcccatttag catgccaggc ggcaccatca
      781 tcagggtgtg gaagtgcggg tgtgcgctgc cgtcgctccc gcgggtgact tccgtggtac
      841 gtatccagcc ctgcacaggc cggaactcct tgcgaacctt catgcgctga aaagctgcat
      901 tcatccggtt cagcatctcg cccagctccc cgatcgcaca gttgcgcacg gtcagagtca
      961 ggaacatcca gcgggcatcg ggataatccg ccacgatacg cggcagggac tggtagaaac
     1021 gggcttgcca catcagggag cgcctccact ggcagacagg acaatgccgg acacggcaga
     1081 aatgcgcctc acgcagcctc agacgcgttt ctccggtttc cttgagggta gaccacccga
     1141 aacgcagtaa accaccacag agggccatac gcgccccgta gcgctcatat tcggctgcaa
     1201 gcaggtaaat ccctcccacg tcatcagaaa cgcttctgtg agcgtcccag ggcgcatctg
     1261 agggggaata gtccgtgagg ttctggagat cagggttttt catgcgcacc acccgatagt
     1321 gggcgatggc tcatctgacg tgttatcatt gccatatcac ctgttgtgtt agtcgtatca
     1381 ccaattcgaa ttcctacagg tggtcacacc cccgaacgat tgccctcgtt gcgggggtcg
     1441 cttttaatgc gaccactccc gacagaataa ctccaaaacc attttccgac aaatccccct
     1501 tcaggccttg cggcacaagg gctggaggcg aatttgaatc ctagagttat cccttaagta
     1561 taaatacaag gatcgcgcgc gacattcgct tgaattttga gcgggatttt cagtcaccca
     1621 aaacacccaa ccccacccac ttacacccat ctcatccaca gactttcacc ccgattttgt
     1681 gaacaacaaa aaaaaccgtc ttgcaggtgg ttggcctcac tgcgtgacac caaccaccat
     1741 ccccagtgtt tttcccgtgc cgtcgtcaat cacaaaatcg gaacccacgc cggaggcgcg
     1801 ggcccccgcg attttctgtt tgacgaatca gggaacggtg aacggtacgc ggaatttttt
     1861 cgcgttccgt gaggcgttgg cggggtgtcg gggcgcagtc ctgaccaggt tcgtagaacc
     1921 gcacagggtt gcaaaggggt gtcccctttg gcacaagcga cggagcgaaa cgccccgttt
     1981 tgtgtacgcc gcttatcgtg cctgtgtttt aggagaacaa aaaaatgccg tgcatacagc
     2041 ccacacaatg acccacataa tcacccacaa ctcaaaacac acagcccaca caatca
//
