LOCUS       CP093146                1983 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2015AM-0511 plasmid p2015AM-0511_6,
            complete sequence.
ACCESSION   CP093146
VERSION     CP093146.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN07415498
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 1983)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2015AM-0511_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 162x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:41:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,674
            CDSs (total)                      :: 4,549
            Genes (coding)                    :: 4,437
            CDSs (with protein)               :: 4,437
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 45 of 112
            Pseudo Genes (incomplete)         :: 84 of 112
            Pseudo Genes (internal stop)      :: 22 of 112
            Pseudo Genes (multiple problems)  :: 35 of 112
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2015AM-0511"
                     /db_xref="taxon:28901"
                     /plasmid="p2015AM-0511_6"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            join(1712..1983,1..160)
                     /locus_tag="CHU58_23365"
     CDS             join(1712..1983,1..160)
                     /locus_tag="CHU58_23365"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY43871.1"
                     /translation="MSAHFVRFPDCQFVDRAEQLWYENGRMICCPVARTARLRGGRRGA
                     KNCRHCASVPVTQTRRNRDRMWECRTAHARSDIPHLVRASPRHPANASRHAKKFRVPLT
                     VLELVKQKIAGPRASGVGSDFVIDDGTGKTLGMVVGVTE"
                     /name="hypothetical protein"
     gene            569..1558
                     /locus_tag="CHU58_23370"
     CDS             569..1558
                     /locus_tag="CHU58_23370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UPY43872.1"
                     /translation="MKNPKLQYLTDYSPSDVPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFLPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMLSGDGYVKHARWVELWRECLRVSYNPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          complement(1557..1638)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="95.181"
                     /coverage="83.0"
                     /evalue="8.21e-29"
     Typing          1901..1979
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.25"
                     /coverage="83.0"
                     /evalue="8.21e-29"
     Typing          complement(1285..1476)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.83e-96"
ORIGIN
        1 cgcctcacgg cacgcgaaaa aattccgcgt accgctcacc gttcttgaac tcgtcaaaca
       61 gaaaatcgcg gggccccgcg cctccggcgt gggttccgat tttgtgattg acgacggcac
      121 ggggaaaacg ctgggtatgg tggttggtgt cacggagtga ggccaaccac ctgcaagacg
      181 gttttttgtt gttcacaaaa ttggggtgaa agtctgtgga tgagatgggt gtaagtgggt
      241 ggggttggga ggttttgggt tactgaaaat ccagctcaaa attcaagcaa atctcgcgcg
      301 cgatccttgt atttatactt aagggataac tctaggattc aaattggcct ccagcccttg
      361 tcccgcaagg cttgagggca catttgctcc gaaatgggtt tagaagtatt ctgtcggaag
      421 tggtcgcgtt aaaagcgacc cccgcaacga gggcaatcgt tcgggggcgt gaccacctgt
      481 agaaattcga attagtgaca cgacaacaca ggtgatatgg caatgataac acgtcagatg
      541 agccatcgcc cacaatcggg tggtgcgcat gaaaaaccct aaactccagt acctcactga
      601 ttattccccc tctgacgtgc cctgggacgc acacagaagc gtttctgacg acgtgggagg
      661 gatttacctg cttgcggccg aatatgagcg ctacggggct cgtatggcct cctgtggcgg
      721 tttactgcgt ttcgggtggt ctaccctcaa ggaaaccgga gaaacgcgtc tgaggctgcg
      781 tgaggcgcat ttctgccgtg tccggcactg tcctgtctgc cagtggaggc gctccctgat
      841 gtggcaagcc cgtttctacc agtccctgcc gcgtatcgtg gcggattacc ctgatgcccg
      901 ctggatgttc ctgaccctga ccgtgcgcaa ctgtgcgatt ggggaactgg gcgagatgct
      961 gaaccggatg aatgcagctt ttcagcgtat gaaggttcgc aaggagttcc tgcctgttca
     1021 gggctggatc cgcacaacgg aagttacccg cggcagcgac ggcagcgcgc atccccactt
     1081 ccacaccctg atgatggtgc cgccctcaat gctatctggt gacgggtacg taaaacatgc
     1141 tcgctgggtt gaactctggc gggagtgcct gcgggtcagt tacaacccga atgttgatgt
     1201 ccgggcagta aaaccccgta agccaaagga tggcgagtcc ttagcctgcg cgaccgctga
     1261 actggtgcgc ggcgcagtgg ccgaaaccct gaaatattcc acgaagccgg ctgacatggt
     1321 ggccgatcct gaatggttcc tcgaactgac ccgccagacg cacaagcgcc gctttgtggc
     1381 gaccggcggc gcactcaaag acgtgctgaa actcgatcag gaaaccgacg ccgacatggt
     1441 gatcggggat gatatttccg agggcgacga tgacggttca cgcatcgcgt tcgagtggaa
     1501 aaccgaggtc agaaagtacc gtcgctcacc gacgaaagat aaaactgaat caggctagcg
     1561 gggtgtcggg gcgaagccct gaccaggtgg ggaatgtctg agcgagcgtg cgcggtccga
     1621 cattcccaca tcctgtcccg aaaattcccg ccgtttctcg gttttttgag cgtcgcagac
     1681 cgcacgacaa acgaaacgaa gtgtagtttg tatgagtgcg cacttcgtga gattccccga
     1741 ctgccagttt gtcgatcgcg cggaacagct gtggtacgaa aacggcagaa tgatttgctg
     1801 tccggttgcc agaactgcgc gcttacgtgg agggcggcgc ggcgcaaaaa actgccgaca
     1861 ttgcgccagt gttccggtga cacaaacccg cagaaatcgg gacaggatgt gggaatgtcg
     1921 gaccgcgcac gctcgctcag acattcccca cctggtcagg gcttcgcccc gacaccccgc
     1981 caa
//
