LOCUS       CP093145                2285 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2015AM-0511 plasmid p2015AM-0511_5,
            complete sequence.
ACCESSION   CP093145
VERSION     CP093145.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN07415498
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2285)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2285)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 2285)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2015AM-0511_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 162x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:41:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,674
            CDSs (total)                      :: 4,549
            Genes (coding)                    :: 4,437
            CDSs (with protein)               :: 4,437
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 45 of 112
            Pseudo Genes (incomplete)         :: 84 of 112
            Pseudo Genes (internal stop)      :: 22 of 112
            Pseudo Genes (multiple problems)  :: 35 of 112
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2285
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2015AM-0511"
                     /db_xref="taxon:28901"
                     /plasmid="p2015AM-0511_5"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            327..575
                     /locus_tag="CHU58_23355"
     CDS             327..575
                     /locus_tag="CHU58_23355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000508159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY43870.1"
                     /translation="MGFWDKAFDVAKTVGKAAWEETKAANERAKQYREEVVSLSDRELA
                     RIIATERHSTPLRAGAAMAELKRRGYANAEEIKALLK"
                     /name="hypothetical protein"
     gene            1351..1545
                     /locus_tag="CHU58_23360"
     CDS             1351..1545
                     /locus_tag="CHU58_23360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UPY43869.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(837..1092)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="89.0"
                     /evalue="1.21e-116"
     Typing          complement(1217..1315)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.22e-45"
     Typing          complement(1619..1701)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.79e-36"
ORIGIN
        1 ccccgtgatt tatacattac ccaccacggg ggcattaggc ttttattgct tttttttgat
       61 agttatcatg ttcttagtaa cactaagagc aacctgatag ccgtcctcca gcacatcgtt
      121 gacaccaatt aaacggatta tgtagagtgc actatacaat tctttgttta acagaggtgg
      181 aaaatggcac caacaatata tagagctaag tgcttggatt gtaagcatga atggactagc
      241 agagcaggtt atgggacacc agactactgc ccaaaatgcc gtagccgcag aatatcaaca
      301 tctccgattg gataaaggag accactatgg gattctggga taaagctttt gatgtagcta
      361 aaaccgtagg aaaagctgca tgggaagaaa caaaagctgc aaatgaacga gccaagcagt
      421 acagagaaga ggtagtgtca cttagcgatc gcgaactagc aagaatcatt gcaacagaac
      481 gccacagcac accattaaga gctggcgctg caatggctga gttaaaaaga agaggctatg
      541 ctaatgccga agaaataaaa gccctcctaa aataaccata gactccattt accataacgt
      601 cgcattacgc gcaccgctaa aacgcgctga acgcgattct gccgcgaaca ccgcaaaaag
      661 agatgtttta ccaagcgaaa accggaaaaa tgcgtcagga tcgctttcag ctcactgcat
      721 agctatgcat gaaagtgaat ggcgatcggt ttgggcgcat acggtgccca tgagacacat
      781 tttcggacat tttcagttcg tgaatccctg actcattgct acatatctga acagacaccc
      841 ctagcagcgc ccccaggggc gtcctgtaaa aaaacacacc gcgccgctag cagcacccct
      901 aatataaaat gatgtttttt atgaaaatag tcagtaccac ccctaaaaag cggtgttggc
      961 gcagctacaa caccgcgccg acaccgcttt tttaaatatc acaaagagag caagaagaac
     1021 taatttgtca taactctcta tttataaaga aaaatcagca aaaaattgtt tttgcgtggg
     1081 gtgtgggcat ttcaggcatg agaacagact cgcgtttttc cggagtatca gcggaattat
     1141 tgattaagaa acactcgacg cagagcgaaa ttttatgcaa cagcggctgc actgcacagg
     1201 gattatttat cagttgatat gctgtgccat gatacgtcct aaaaaaacag gacaggatgt
     1261 gcaattgtaa taccgtcgcc cgcaacgtct tacaattacc acctggtcag ggtccacccg
     1321 acacccggta ctgacggaga acaacggaag gtgaacaaac agcaacaaac tgcgctgaat
     1381 atggcgcgat ttatcaaaag ccagagcctg acactgcttg aaaaactgga tgctctggat
     1441 gccgacgaac aggcggccat gtgcgaacga ctgcacgaac tcgcggaaga actccagaac
     1501 agcatccaag ttcgctttga gaccgaaagt gaaacaggaa cataacgaag ctgacggagg
     1561 cgctcacggc ttgtccgcga gcgttttcgg cagcagacaa gcccgccagg gcgcgtcagc
     1621 gggtgtcggg gcgaagccct gacccagtca cgtagcgata gcggagtgta tactggctta
     1681 actatgcggc atcagtgcag attgtatgaa aagtgcccca tgccgggtgt gaaataccgc
     1741 acagatgcgt aaggagaaaa tgccgcatca ggcgcacttc cgcttcctcg ctcactgact
     1801 cgctacgctc ggtcgttcgg ctgcggcgag cggtgaaaac gatctgacat gatcaaaatg
     1861 atcttcatgc gctaaatgta caaaagcccc gtgacagaat cacagggctt cggtactcta
     1921 attctttgca gatacctgcc aggatcagac gtagcaatct aaatcctagc agggctggct
     1981 agtattgtca ctaccagctt aataccattc aacgacatta aacccatatc tgcaccttag
     2041 atgctcaggt ctacgccccg gactccggca ggataaacag gcaactggtg gaaacgtaac
     2101 ttaaccgcga aagagttaag ctctgccccg tctcgctgta cgataactag cacctgataa
     2161 aatgagcaac taaggagctg taagaggtaa agtgtgattg caaacgtctg gcacttcacc
     2221 cacaaaatca agccgttgca aggtaagaaa aacaaagaaa cgatctagac gaaggtcgct
     2281 acgct
//
