LOCUS       CP093144                3257 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2015AM-0511 plasmid p2015AM-0511_4,
            complete sequence.
ACCESSION   CP093144
VERSION     CP093144.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN07415498
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3257)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3257)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 3257)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2015AM-0511_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 162x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:41:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,674
            CDSs (total)                      :: 4,549
            Genes (coding)                    :: 4,437
            CDSs (with protein)               :: 4,437
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 45 of 112
            Pseudo Genes (incomplete)         :: 84 of 112
            Pseudo Genes (internal stop)      :: 22 of 112
            Pseudo Genes (multiple problems)  :: 35 of 112
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2015AM-0511"
                     /db_xref="taxon:28901"
                     /plasmid="p2015AM-0511_4"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(17..313)
                     /locus_tag="CHU58_23340"
     CDS             complement(17..313)
                     /locus_tag="CHU58_23340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000609270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="UPY43867.1"
                     /translation="MINLVDPVHPGVFIREMFMEPFEISAADLSEKLHVSPSTLSRVLN
                     GKADLSVEMALRLSRVLGRSAESWINMQTQYSLNASRKSPNVIKELDELVPIF"
                     /name="HigA family addiction module antitoxin"
     gene            658..939
                     /locus_tag="CHU58_23345"
     CDS             658..939
                     /locus_tag="CHU58_23345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000586174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="UPY43868.1"
                     /translation="MIINIKHKGLRKFAETGNNAGIPQQFTQRLKLILTALSTATNLQD
                     MMDLKALRCHPLKGDRQGEYSLEVNGNWRVVFKLEEPNVFDVDLEDYH"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            2083..2277
                     /locus_tag="CHU58_23350"
     CDS             2083..2277
                     /locus_tag="CHU58_23350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UPY43866.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(1569..1824)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="89.0"
                     /evalue="1.21e-116"
     Typing          complement(1949..2047)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.22e-45"
     Typing          complement(2351..2433)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.79e-36"
     Typing          2446..3000
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.614"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gcggcctttt cttttctcaa aatataggaa ccaattcatc taattcctta atgacattag
       61 gtgacttcct gctcgcgtta agactgtatt gagtctgcat gtttatccac gactcggcac
      121 tgcgaccaag aactcgagaa agccttaatg ccatctcaac acttaaatca gcttttccat
      181 tcagcactct acttagagtg gaaggtgata catgcagttt ttcagacagg tccgcggctg
      241 atatttcaaa cggttccata aacatctcac ggataaaaac ccctggatgt actggatcga
      301 caagattaat cataccttcc tctgaagcct atattagttt taaaaagata ggcctattgc
      361 gttttcagat tgcgcattgc gcataacgca actcattgtt gactaaaaaa aagaatgaca
      421 ttatgatgca cattggtgcg tctaatcatt ccttatgatg tgggtacttg atgtgaaatt
      481 caaggccccg gcattgtaca gcgcatcaaa ccaatgtcaa cagattaaaa tgcgacttgg
      541 ttaagtaaaa cctacgtcat ttattcaaat agagcaaggg gtttgcaatg gaaatacgga
      601 tgaaccggaa aaataaactg cgatgtttct atctaaacaa atatgggatg gtgattaatg
      661 atcataaata tcaagcataa aggtttgcgt aagtttgccg aaacaggtaa caacgcagga
      721 attccgcaac agtttactca acgtctgaag ctgatcctaa cagccttaag cacagcgacg
      781 aacttgcagg atatgatgga tttaaaggca ttgcgctgcc atccattgaa gggagaccgt
      841 caaggagagt attcgctaga ggtcaatgga aactggcgcg tagtgtttaa gctcgaagaa
      901 cctaacgtct ttgacgtgga tctcgaggat tatcactaag aaggtcctta aagcatcaaa
      961 gtgacagtat cgatgcttta gggtctcata aaaaagcaaa acctcggggt aagttatatg
     1021 aagtattttc tgtaccagat agtccctata gcagccatca tttgcgcagc aattctagcg
     1081 ctaaaaggta tcaatggctg ggggtggttc ttaactgttg ggttcctgct tgcaggggca
     1141 gatacagtaa aggctcagtt atctaagtag taataaacac tatcaatagt ggttggataa
     1201 ttgcccaaaa agcctctatc tgttctgaaa cagacaacaa ggaaaaatcg gtgtaagcca
     1261 cctccataag aggtggtatt gatatcaaca tagataaaac catcccgtaa atcacagcat
     1321 ttaccataac gtcgcattac gcgcaccgct aaaacgcgct gaacgcgatt ctgccgcgaa
     1381 caccgcaaaa agagatgttt taccaagcga aaaccggaaa aatgcgtcag gatcgctttc
     1441 agctcactgc atagctatgc atgaaagtga atggcgatcg gtttgggcgc atacggtgcc
     1501 catgagacac attttcggac attttcagtt cgtgaatccc tgactcattg ctacatatct
     1561 gaacagacac ccctagcagc gcccccaggg gcgtcctgta aaaaaacaca ccgcgccgct
     1621 agcagcaccc ctaatataaa atgatgtttt ttatgaaaat agtcagtacc acccctaaaa
     1681 agcggtgttg gcgcagctac aacaccgcgc cgacaccgct tttttaaata tcacaaagag
     1741 agcaagaaga actaatttgt cataactctc tatttataaa gaaaaatcag caaaaaattg
     1801 tttttgcgtg gggtgtgggc atttcaggca tgagaacaga ctcgcgtttt tccggagtat
     1861 cagcggaatt attgattaag aaacactcga cgcagagcga aattttatgc aacagcggct
     1921 gcactgcaca gggattattt atcagttgat atgctgtgcc atgatacgtc ctaaaaaaac
     1981 aggacaggat gtgcaattgt aataccgtcg cccgcaacgt cttacaatta ccacctggtc
     2041 agggtccacc cgacacccgg tactgacgga gaacaacgga aggtgaacaa acagcaacaa
     2101 actgcgctga atatggcgcg atttatcaaa agccagagcc tgacactgct tgaaaaactg
     2161 gatgctctgg atgccgacga acaggcggcc atgtgcgaac gactgcacga actcgcggaa
     2221 gaactccaga acagcatcca agttcgcttt gagaccgaaa gtgaaacagg aacataacga
     2281 agctgacgga ggcgctcacg gcttgtccgc gagcgttttc ggcagcagac aagcccgcca
     2341 gggcgcgtca gcgggtgtcg gggcgaagcc ctgacccagt cacgtagcga tagcggagtg
     2401 tatactggct taactatgcg gcatcagtgc agattgtatg aaaagtgccc catgccgggt
     2461 gtgaaattcc gcacagatgc gtaaggagaa aatgcgcgtc caggcgcttt tccgcttcct
     2521 cgctcactga ctcgctacgc tcggtcgttc ggctgcggcg agcggtactg acttacacaa
     2581 aaacggcagc acggttatcc acagaatcag gggataaggc cggaaagaac atgtgagcaa
     2641 aagaccaaga acaggaagaa ggccgcgccg caggcgtttt tccataggct ccgcccccct
     2701 gacgagcatc acagaaatcg acgctcaagt cagaggtggc gaaacccgac aggacttaaa
     2761 gataccagac gtttccccct ggtggctccc tcgtgcgctc tcctgttccg accctgccgc
     2821 ttaccggata cctgtccgcc tttctccctt cgggaagcgt ggcgctttct catagctcac
     2881 gctgtaggta tctcggttca gtgtaggtcg ttcgctccaa gctgggctgt gtgcacgaac
     2941 cccccgttca gcccgaccgc tgcgccttat ccggtaacta tcatcttgag tccaacccgg
     3001 aaagacatgc aaaacaccat tggcagcagc cactggtaac tgatttagag gagttagtct
     3061 tgaagttatg cgccagttaa ggctaaactg aaagaacaag ttttggtgac tgcgctcctc
     3121 caagccagtt accctggttc agaaacttgc cggttactga accttcgaaa aaaccacctt
     3181 gccgggtggt tttttcgttt acgagaaacg atacgatcca gttgcctgag agtcaagaca
     3241 gaaaaaggcc gcatata
//
