LOCUS       CP093142                5463 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2015AM-0511 plasmid p2015AM-0511_2,
            complete sequence.
ACCESSION   CP093142
VERSION     CP093142.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN07415498
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5463)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5463)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 5463)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2015AM-0511_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 162x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:41:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,674
            CDSs (total)                      :: 4,549
            Genes (coding)                    :: 4,437
            CDSs (with protein)               :: 4,437
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 45 of 112
            Pseudo Genes (incomplete)         :: 84 of 112
            Pseudo Genes (internal stop)      :: 22 of 112
            Pseudo Genes (multiple problems)  :: 35 of 112
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5463
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2015AM-0511"
                     /db_xref="taxon:28901"
                     /plasmid="p2015AM-0511_2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(join(4722..5463,1..278))
                     /locus_tag="CHU58_23295"
     CDS             complement(join(4722..5463,1..278))
                     /locus_tag="CHU58_23295"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPY43859.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREDAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKC"
                     /name="replication initiation protein"
     gene            complement(1079..2203)
                     /locus_tag="CHU58_23300"
     CDS             complement(1079..2203)
                     /locus_tag="CHU58_23300"
                     /inference="COORDINATES: protein motif:HMM:NF013211.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_component:
                     GO:0016021 - integral component of membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="colicin-like pore-forming protein"
                     /protein_id="UPY43860.1"
                     /translation="MSGGDGRGPGNTGLGHNGGKPSGNVNGSSGHGGPSSGGGYHYNPG
                     KGPASTVGPDGEVHINITGGMEKDPPGKHHGNGGSGNGHGAGNHNSNSGGNGKTTSIPG
                     WSPDSGKPGRYLPTNKDKLIKGLIQSIDDHSGTYTIHYTGGAVATVTVPNGDVNKMNVH
                     YNIGSGPSSGNKLTRDTIKSFLEFKAENEANAVNDAISKVNDFYKELASKYGDKLEKEA
                     KALADEAKGKKIRNANEAIKAFDRYKDVLNKKFSVSDREAIAKALESLNKDQMAKQLKI
                     FGKAFGVVGEAIQWGGFISGLVKGFRTGDWNEAFISGEKIAVGKVASVMVTVAFSAMAV
                     NPIGILGFAVIMAVTSALITDERLKQLNSFINGI"
                     /name="colicin-like pore-forming protein"
     gene            complement(2424..2957)
                     /locus_tag="CHU58_23305"
     CDS             complement(2424..2957)
                     /locus_tag="CHU58_23305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY43861.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQNLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVILED
                     KLAEKPVTGKNRKN"
                     /name="hypothetical protein"
     gene            complement(2960..3886)
                     /locus_tag="CHU58_23310"
     CDS             complement(2960..3886)
                     /locus_tag="CHU58_23310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UPY43857.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTPEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIEGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     PTQQKEQLRELRKRWEVKHNEHMRKNGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIMEWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQDRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            4063..4461
                     /locus_tag="CHU58_23315"
     CDS             4063..4461
                     /locus_tag="CHU58_23315"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY43858.1"
                     /translation="MRISNIEWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNDLQAQESERKQAVQKRIEGKKQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELCYKKDRILQALKEIKYDLETSPNPDA"
                     /name="hypothetical protein"
     Typing          complement(2..278)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.122"
                     /coverage="83.0"
                     /evalue="1.9300000000000003e-129"
     Typing          complement(4982..5463)
                     /name="rep_cluster_2131"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.965"
                     /coverage="92.0"
                     /evalue="0.0"
     Typing          complement(2964..3886)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.052"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcgatgttga gtgcgtagag caggtgagcg tgtccgttca caggattttt aacggtgatg
       61 ttcggcgcgg gggcgttccg gtcgctccag tcaatcgcag ccccctcgcg gtcaacgtca
      121 aaaaccagcc agaactgcgc atgaggctgg ttctgctgga tgtaccgcgc aagaagcgca
      181 cgccctttgc cggagatgcg aaggccgaaa gcgagatcat ccgtgtgata ggggcggtgg
      241 ggtaaatttt cttcgaagta ttgaagcgcg gcgctcatgt gttacgattc cttccaggtt
      301 atcgaccgac ctcgcccctg tattctcgtg acaatcttgg cggagagaca cgaatttcag
      361 gggcgtttgt ttttcagtcg cttacactac ccccaacaac aaaacctgtc gagccttccc
      421 gcaaaaccga tccatttacc ataactcccg ttgtacgtac cccttaaaac gccctcagtc
      481 gctttctggc gcaaaaaacg caaaaagaca aggaaacacc aggccaaacc agaaaaatgc
      541 gtcagaatca ctttcagggc gttgcataac tatgcacgaa agcgattcgc aaacagtttc
      601 gaccgttcaa aagggcgaac gagtcaaaaa agtaactttt gtgataacta cttctagatt
      661 tatggataaa gtaaggcaat attataaaca tttaactaac gaggatttta taaatgaaaa
      721 aaatagatat ggaattctat ttaaggaatt ttatccttgc cttatccttt tacattttat
      781 cttttatcat cgcaagtttg aatctaagcc caacaagtat agaattattt atatttatac
      841 ttatatctct ttttggatcg tccacatacc ctttttgtct attactaata aataagcaag
      901 cacccttact aacaaaaaca acttttaact tcgttaactg gggttttata atatgcatta
      961 tattatcact acctccattt ggattgattt ttacagtcta ttactttata accaacaaaa
     1021 agcgatagaa aaacaaaata aaggtcatac catatcaaac ggtacgacct tttgtttatt
     1081 aaatgccgtt aataaagctg tttagttgtt tcagcctttc atctgtaatt aaggcactag
     1141 tcactgccat aattactgca aaccctaaaa taccaatagg atttactgcc atagcactaa
     1201 atgccactgt aaccataaca gatgctacct tgccgactgc gattttttcc ccgcttataa
     1261 aagcctcatt ccagtcacca gttctgaatc ctttaactaa gccactgata aatccccccc
     1321 actgaatagc ctcacctacg acaccaaagg ccttaccaaa aatttttaac tgtttagcca
     1381 tttgatcttt attaagagac tccagtgctt ttgcaatcgc ttctcggtcg gatacgctga
     1441 atttcttatt aagcacatcc ttgtacctat caaaggcttt aatcgcctca ttagcattgc
     1501 gaattttttt ccctttagct tcatcggcta gtgccttggc ttctttctcc aacttatcgc
     1561 cgtattttga tgctaactct ttataaaagt cattaacttt gcttattgca tcatttacag
     1621 cattagcttc attttctgcc ttgaattcta aaaagctttt tatagtatca cgagtcagtt
     1681 tattacctga tgacggccca ctaccgatat tatagtgaac attcatttta ttcacatcac
     1741 cgtttggtac agttactgta gctactgcac caccagtata atggatagtg tacgttccag
     1801 aatggtcatc tattgactga ataagtccct taattaactt atctttattt gtcggtaaat
     1861 atctgccagg tttcccagag tcagggctcc atccaggaat agacgttgtt tttccattgc
     1921 cgcctgaatt gctgttatga tttccagcac cgtgaccatt acctgagcca ccattaccgt
     1981 gatgttttcc tggaggatct ttttccatac caccggtaat gttgatatgc acctccccgt
     2041 caggacctac agtgcttgca ggaccttttc ccggattgta atgataccca ccgccagatg
     2101 atggtcctcc atgtccagat gagccattca cgtttccact gggtttacca ccgttatgtc
     2161 caagccctgt attaccaggg ccacgaccat ctccaccact cataaaaatt ccctctttta
     2221 atcgttaaaa caattaatta catagttaat actgtacata aaaccactgg ttttatgtac
     2281 agatcaaaaa gtactcgcca ttattttttc tgtcaagtca gggagggata ttttttggca
     2341 gttcggagga atcactcatg aaaacggtga acggaacgcg aaatcctttc gctgtccgtg
     2401 aggcgttgga caagcgaagc gcgtcagttt ttccggttct tacccgtgac aggtttttcc
     2461 gccagtttat cttccagtat cacaactttc tgatacaccg ccgctgtggc gttgtagttc
     2521 ctgtcgagca ttgttttcat tccccatccg agcacacaga acataactag aaaagccact
     2581 gacaccccac ccagccattt ccagctatac cctttaaggg tgttgtattc ctgcacgata
     2641 ttgctgtgaa ttgtcgcaat atccctgttc agggcatccg cgtttgcctt catgtttgcg
     2701 actgactctt ccagccgctg aaaatcctgg ctgatgcgct cacctatcag ccctgctacg
     2761 tccagattct gcacctcatt tctgacttca tccctgacct gttttgccac accgtcagaa
     2821 atatcccgat atccgcgaag tgtttccctt gccacagcca gagaatcagc aacagctttc
     2881 tgttgctcca ttgcggtatg ttgcaaatgc tccaccgata acaggagcgt gagtaatttt
     2941 tcttctgtgc tggccatgtt cagaatccca tagaaaatcc acgtgacggt gatttaaccc
     3001 gttcaggttc agttcggtcc tgtctgctca ctctgtctct catgtcaaag ccatgctccc
     3061 gcgcaacatc atgttgcagc cttctgacca gttcatgttg cttaaccgga gtgtccagcc
     3121 attccatgat gtcatgcccg accgttcgcg cctgttcaag atggcgggaa tagtccggtt
     3181 cagaccgttt ttgcatgatg tcatgacgct gggcatcatc aagccgtccg gcagcttcaa
     3241 aacccagatg cacttcggga cgtcgttcaa tgccctgttc tttcagcgtc cgacagtcaa
     3301 tgaagcccct ttcaaagcca ttttttctca tatgttcgtt gtgcttcacc tcccagcgtt
     3361 ttcgcaattc ccgcaactgc tctttttgct gagtgggagt caggcttcct gaatcctttt
     3421 tcgcacctcc ccgctcggga tacctggcgt tatagcgccg gaaatactgt tccggtgtac
     3481 gttcaatgcc atcattcaca cgctgactca tcatgatatg cgcatgaggc tgttcgcctc
     3541 cctcaatgct cgctttcgga ttgtgaatgg caaaactcca tgcatgccgt tcgccagctt
     3601 cctgacgtac aaaatcctgc accagttcaa ggcgctgttc cggtgtcagt tcacggggca
     3661 gcgctatctc cagttcccga taagtcgaac cgtttgcacg ttcaaactgg tcagccgcct
     3721 gccagaaatg ggagggatta tctcgcgccc attccggcat gtttccgtgt gcggaatatt
     3781 ccaaatcttg acggtcgcgg tatttctctt tgcgctcgat gtaatcggca tggtttgcag
     3841 cctgtccctt gccaccaaac ttaacgctga ggtgataggt cgccacggtt tcagccctcc
     3901 gcaggagcgc actgtttctc gacgaaggag agaaacatat aagtgcgctt ccttctaatt
     3961 ttacgaatta gcacggaaga taccccctgc acccgccgac cgcaagcgat atactgcacg
     4021 accacaacac accgcaaaaa aacaccaggg agcaccacga acatgcgcat cagcaacatc
     4081 gaatggctga agaaacggat cggattcatc aggaagctcg gagaacagac cgcacgacag
     4141 agacagatta ttgacctgct cgacaacgaa gcaggactca cagaacagga acgcaaactc
     4201 ctccacgtac tggcaacagc ggaaaaaaac gacttacagg cacaggagag cgaacgaaaa
     4261 caggcggtcc aaaaacgaat cgagggaaaa aaacaacgac gagaacgcaa tcaccgactc
     4321 tttctcgcgg ctgggctact gatcgaagca ggactggtag acacaaaaac aggcgagcta
     4381 tgctataaaa aagacaggat attacaggca cttaaggaaa ttaagtacga tctggagaca
     4441 tccccaaacc cagacgcgta agtgcctcca tccgtgttcc ggttccctgg tgcttcctcg
     4501 ctcattcgct cgctacgctc ggtcatgaga ctgcggcgag cacgaccacc tcaatcatgc
     4561 ggtaagccgc accattgctg ggctgagagg agaaaaccgc cggaaagccc gctgctcaaa
     4621 aagacgccga aaggcgctgt tatctgatat aggcttgttc atgtccgcga atttaacatc
     4681 ccattaacaa aaaacagggg gtagtgttgc ttctttgtta actaacattt aattatttgt
     4741 ttcttggtta gccattctcc agaattatcc atccagcgtc gaatagtccg gctgctaaca
     4801 ccaaccgcca ctgcaatatc ttccgttgac gctcccaaga tatacatatc aagcgcccta
     4861 cgacgtttgt cgtcgttagc agtccaccga acagcggcgc tttttttccc tttgtccgac
     4921 tgattttctg acgaattggc cttcccgccc ttgcgaccgc gtgctgcctg aatttctggc
     4981 gtgtgcgtat cagccacata ctgtgcgaaa gtttccggcg tgaagttcct gtgcgtgtat
     5041 ttcgcaatgc tcttgccaat agcccgacat tcagccagtg aaagcggaac gggaagcgat
     5101 gcattgtaca tttcgacacg ctggatcacc gcttcaagcc actgtgagaa cgctggccag
     5161 ccctgacgaa tcgccctgta agcccatttg cgcgtcattt cgaacaggtg gcagtttcgc
     5221 cccatcccgt aatgtttatc gatgctacga cgctctgagg cgctcaaatc gagataatct
     5281 gccagttcat cgagggtata ggcgtcctcg cgccactcca tcacctgcca ttccaggtgg
     5341 aacggatttt tgcaaatcag gccgctgtag ttcacatcag cacaaagttt ctcacacagc
     5401 gaacgttcaa ccgctgcggc atatttcagc gccttaaccg aggcatcagg cgcggttctc
     5461 acg
//
