LOCUS       CP093137                4659 bp    DNA     circular BCT 05-MAY-2022
DEFINITION  Salmonella enterica strain PNUSAS127695 plasmid pPNUSAS127695_2,
            complete sequence.
ACCESSION   CP093137
VERSION     CP093137.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN13795856
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4659)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4659)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2020) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 4659)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS127695_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 62x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/04/2022 09:14:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,698
            CDSs (total)                      :: 4,570
            Genes (coding)                    :: 4,449
            CDSs (with protein)               :: 4,449
            Genes (RNA)                       :: 128
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 48 of 121
            Pseudo Genes (incomplete)         :: 87 of 121
            Pseudo Genes (internal stop)      :: 24 of 121
            Pseudo Genes (multiple problems)  :: 34 of 121
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4659
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS127695"
                     /db_xref="taxon:28901"
                     /plasmid="pPNUSAS127695_2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            161..340
                     /locus_tag="GUD44_23425"
     CDS             161..340
                     /locus_tag="GUD44_23425"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPX62700.1"
                     /translation="MEKRQRRILFSFILDLSAIHLVILEQVTPAAASRQERSDRVSEEA
                     SFHRLQHFALTPHS"
                     /name="hypothetical protein"
     gene            569..892
                     /locus_tag="GUD44_23430"
     CDS             569..892
                     /locus_tag="GUD44_23430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UPX62703.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1101..1535
                     /locus_tag="GUD44_23435"
                     /pseudo=""
     CDS             1101..1535
                     /locus_tag="GUD44_23435"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1570..2055
                     /locus_tag="GUD44_23440"
     CDS             1570..2055
                     /locus_tag="GUD44_23440"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UPX62701.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSAAMSQRTKGMLRMVSQTWLTIVLVSTLLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            2059..2274
                     /locus_tag="GUD44_23445"
     CDS             2059..2274
                     /locus_tag="GUD44_23445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UPX62702.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2473..3024)
                     /locus_tag="GUD44_23450"
     CDS             complement(2473..3024)
                     /locus_tag="GUD44_23450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000654246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPX62698.1"
                     /translation="MKDMKAVVVFTGKDLNIMRTEGGSGYWHARTDRLNDADYLIAVRN
                     RRETWAVKDLEHGTAFLIAKITGCFKSPDYDDRNVITFDEYAEIHTPKAWKMLTDGQRY
                     PVAYLSAQEAFLRIGVTPEQLEWKKFHPSSPSVPNTVIPGLAEEKTEKLSLNEAIERAK
                     KDISNATGIDSSAITISIKI"
                     /name="hypothetical protein"
     gene            3502..3981
                     /locus_tag="GUD44_23455"
     CDS             3502..3981
                     /locus_tag="GUD44_23455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPX62699.1"
                     /translation="MNLLLPRDIVEAVLNDKKTKNARVAKCDGSEFFLELPSMNADFPA
                     GKIILKLGDSGFYNKRTKSLEGAYGLRHIWDKHRVEIGATSAEDIVIFLESILLAGAEV
                     LIDPKKGQNKAIVVESGTGMMILELKKPNGEDPYYSIITAYDRKSHPGTKLHTLI"
                     /name="hypothetical protein"
     Typing          282..465
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.561"
                     /coverage="86.0"
                     /evalue="2.7100000000000003e-47"
     Typing          complement(4292..4659)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.528"
                     /coverage="94.0"
                     /evalue="8.43e-111"
     Typing          883..2378
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ataacagcgg aatgacaccg gtaaaccgaa aggcaggaac aggagagcgc acgagggagc
       61 caccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac cactgatttg
      121 agcgtcagat ttcgtgatgc ttgtcagggg ggcggagcct atggaaaaac ggcaacgccg
      181 gatccttttc tccttcattc ttgatttgag cgctattcat ctcgtcattc ttgagcaggt
      241 aacgcccgcc gcagcctcac ggcaggagcg tagcgaccga gtgagcgagg aggcgtcatt
      301 tcatcgtctc cagcatttcg cacttacgcc ccacagctga attttttacc tgccacatga
      361 agcacttccc tgaatttcca cttcgattta ccatactaag ccagtataca ctccgctagc
      421 gctacgtgac tggttcaggg ctgcgccccg aaacccgcta aaaccactga cgcgcctgcg
      481 gcttgtacaa caccgcgccg accgggaaaa gatttcccgc ccgtcccggc gttatcagga
      541 ggccggattg gcagacaaac gcagcaaaat gctcacgatg tgggtgaccg aagatgagca
      601 ccgccgtctg ctggagcgct gcgacggtaa acagcttgca gcctggatgc gccagacgtg
      661 cctggacgag aaacccgccc gcgccggcaa gcttccctcg ctctcgccgg cgctgcttcg
      721 tcagcttgcc ggtatgggga acaacctcaa ccagattgcc cggcaggtta acgccggtgg
      781 tggcagcggg cacgaccgcg tgcaggtcgt cgccgcgctg atggccatag atgccggact
      841 cgagcggctg cggcatgccg tgctggaaaa gggtgcagac gatgatcgtt aagtttcacc
      901 cgcgagggcg cggcggtggc gccggtccgg tggattatct gctggggaaa gaccgacagc
      961 gcgacggcgc caccgttctg caggggaagc cggaagaagt cagggagctt atcgacgcct
     1021 cgccctacgc aaaaaagtac acatccggcg tcctgtcctt tgccgaaaag gatttaccgc
     1081 ccgggcagcg cgaaaagctg atggcgagct ttgaacgggt tctgatgccc ggactcgata
     1141 aagaccagta cagcgtgctg tgggttgagc accaggataa ggggcggctg gagctgaact
     1201 tcctgatccc gaacacggag ctgctgaccg gcaagcgtct ccagccgtat tacgaccgcg
     1261 ccgaccgtcc gcgcattgat gcctggcaga ccatcgtgaa cggcaggctg gggctgcatg
     1321 acccgaacgc gcctgaaaac cggcgggcgc tggtcacgcc gtccgcgctg ccggaaacga
     1381 agcaggaagc cgctcaggca attacacggg gtttactggc cttagcctcg tccggggagc
     1441 tgaaaacccg ccaggacgtc actgaggcgc tggaaagcgc aggttttgag gtggtacgca
     1501 ccacaaaaag cagcatcagc attgccgacc cggacggggg gcgaaacatc cgactgaagg
     1561 gagccatcta tgaacagtct tttaacgctg gcgaaggact tagagcagaa atcgaaagcg
     1621 cagcagcaga gtaccggcga gatgctgaaa gccgcattca gcgagcacga gaagtctgtc
     1681 agagcggaac tgagcgaaag cgagaagaga atcagcgccg ccatcctcga ccacgacagg
     1741 aagctgtccg ctgccatgag ccagcgcacg aaaggtatgc tgcggatggt cagccagacg
     1801 tggctgacca tcgtcttggt gtctacactg ctgacagcat cgggcgcaag cattctgtgg
     1861 tggcaggggc agcagatact cgacaattac acgaccatcc gggagcagaa gcgcacgcag
     1921 gccatgctgt ccgagaggaa cagcggtgtg cagctctcga cctgcggaga gcagagacgc
     1981 cgctgcgtga gggtgaaccc ggaagcggga cggttcggag aggattcgag ctggatgata
     2041 ctggcgggga aatagcacat gacggagctg gaaaaacagt tgctgagcgc attagagcag
     2101 ctacagcagg actactcgaa aaggctggac gagtgggaga acgccttcgc ggaatggcgg
     2161 acgatgtctg gtcttatgca acgggagaac gcggcgctga gcgagcgcgt tacgggcttg
     2221 agcaggcagg tgcagagttt gagcgagcag ctgcgccggt tgtcacaagg ctgaacgtga
     2281 tagaggcaca tcgtgagcag gaacgggcgg cgcagcatca gaaagcgctg gagctggaac
     2341 gatctcagcg acagcgaacg tacaacggtc cgtcactttg aatctgtgcg ccggaaaagc
     2401 atgggcttgc tgtttctggc gtacaggttc agttctagaa catgaggctg ctatcttgtt
     2461 gttcacgctt catcagatct tgatgcttat tgttatggct gagctatcaa tccctgttgc
     2521 gttgctaata tcctttttgg ctctttcaat tgcctcgtta agggagagtt tttctgtttt
     2581 ctcttcagcc agaccaggaa tcactgtatt aggaaccgat ggggatgaag gatggaattt
     2641 cttccattcc agttgttccg gtgttacccc aatacgtaaa aaagcttcct gtgcgctcag
     2701 gtaagcaacc ggatagcgct gaccatcggt tagcattttc catgcttttg gcgtgtgaat
     2761 ttctgcgtat tcatcaaagg ttatgacgtt cctgtcgtcg taatcagggc ttttaaaaca
     2821 cccggtaatt ttggcgatca ggaatgctgt gccgtgttcc aggtctttta ctgcccacgt
     2881 ttcccttctg tttcttactg ctatgaggta atcggcatcg ttgagcctgt ctgttctggc
     2941 atgccagtag cctgaccccc cctcagttct cattatgttc aaatccttcc cggtaaaaac
     3001 cacaacagct ttcatatctt tcatatagaa acccttaata ggtgagtgaa tttcattttt
     3061 tttatggaat ctatacgata aaaatcgtgt tgtaaatgtt tttttatgcg ataaaataca
     3121 gtcctcctac ctcttttatt gttagtggta aggctttctg tttggttttt tgataaaccg
     3181 gttaaaacag gggcttggac gaggatatac attgaaagca tgagcaattc acgtggctgc
     3241 atggctatgc agccacgtga aatttatcag gcgcagaatg cgcggtttag cggggagttt
     3301 actgccggtt ttaccgggct aacgccgctt tcacgctgaa cccgtccgga gcggtgcggg
     3361 caaggaatgt tatggtaaat acaactggtt ttttctatca agatttactg gaaattgctc
     3421 attacgtcag tgttagaatc agcccttcaa aaagggattt aacgcctaaa cataatagtg
     3481 aaggctatag aggtgtagtt tgtgaacttg ttacttccac gcgatatagt tgaagctgtt
     3541 cttaatgata agaaaacaaa aaatgcacga gtggctaagt gtgatggaag tgaatttttt
     3601 ctagaactgc caagcatgaa tgcagacttt cccgcaggga aaatcatcct caagctagga
     3661 gattccggtt tttacaacaa aaggacaaaa agtctcgagg gagcctatgg ccttaggcat
     3721 atatgggaca agcatcgtgt cgagatagga gctacttccg ctgaggatat tgtcatcttt
     3781 ttggagagca tattattagc tggggcagaa gtgctcatag atcctaaaaa aggccaaaac
     3841 aaagcgattg ttgtagagtc aggaacgggg atgatgatac tagaattgaa aaaaccaaac
     3901 ggcgaagacc cgtactacag catcattact gcttatgata ggaagagcca tccaggtaca
     3961 aaacttcata ccctaatatg aaaaaagccg gctaaatagc cgacttcttc gtaatagtgt
     4021 tgttcgtggc attcccttag catttcggtt cgggacaggt ctttgacctt aacaacgcat
     4081 tgtcgaaatc tggtttccga caagtagcct acaaatatgt aaccaatcca gagttcaggt
     4141 tacataccaa gcccttctac acatacagaa tacaactcta tcactgctca tctttttgca
     4201 aaaagtgcta ttttggtgtt cagtggaaac caaaacgaag ccaaatcact ggtaaacggt
     4261 cagatctcct tgtgatcgtt ttactctcgt cgtaatctct ctccctgtaa acgaaaaaac
     4321 cacccggcaa ggtggttttt cgaaggttca gtaaaccggc aagtttctga accgtggtaa
     4381 cagtcttgtg cgagacatgt caccaaatac tgtccttcca gtgtagcctc actaaggcct
     4441 ccacttcaag aactctcgat acatctctcg cacatcctgc ttaccagtgg ccgctgccag
     4501 tggcgttaag tcgtgtcttt tcgggttgga ctcaagacga tagttaccgg ataaggcgca
     4561 gcggtcggac tgaacggggg gttcgtgcat acagtccagc ttggagcgaa ctgcctaccc
     4621 ggaactgagt gtcaggcgtg gaatgagata aacgcggcc
//
