LOCUS       CP093128                4072 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2014AM-1331 plasmid p2014AM-1331_2,
            complete sequence.
ACCESSION   CP093128
VERSION     CP093128.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN05596322
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4072)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4072)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2014AM-1331_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 170x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:41:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,593
            CDSs (total)                      :: 4,468
            Genes (coding)                    :: 4,358
            CDSs (with protein)               :: 4,358
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 20
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 44 of 110
            Pseudo Genes (incomplete)         :: 83 of 110
            Pseudo Genes (internal stop)      :: 22 of 110
            Pseudo Genes (multiple problems)  :: 35 of 110
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4072
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2014AM-1331"
                     /db_xref="taxon:28901"
                     /plasmid="p2014AM-1331_2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            join(3711..4072,1..340)
                     /locus_tag="MM173_22955"
     CDS             join(3711..4072,1..340)
                     /locus_tag="MM173_22955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPY57062.1"
                     /translation="MSDLIAYKSNALIEASYKLTLQEQRFLLVCISRLKSGEDSPSPDE
                     QKTMTITAAEFHDAFPDMGRQHAEARLKEAIDRLWDRSVIIKNEEKREEFRWVQYRAQY
                     FKGEAKVDITFSDAIMPYLTQLKGQFTRVVVKNVSSLSSTYSIRIYELLQQFRSTGDRT
                     IAIDDFRTMLAVEDKYQQFKDLNKMIIKPAIAELNEKSDLVVTVETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     gene            complement(597..2744)
                     /locus_tag="MM173_22960"
     CDS             complement(597..2744)
                     /locus_tag="MM173_22960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UPY57063.1"
                     /translation="MAIYHLSMKIISRSSGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPHELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAIGPAGFSGKVRDWNDRTHAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQ
                     NRLINRLNLEIQISRTELRNGGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPKDSN
                     SAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWA
                     APEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQMAFEKQWQQWGESGLAALRAQL
                     LKREEELRRKEQEDTERSRAEQLRKNDNAVMDSGVLRAVVTGYGEAPMPGNGEMTCYLL
                     LHNRNGEYTLWGNELEKYRTRIFESVDLMRDRSGYICDRSEIGQRPPLQRVYSSATFEQ
                     LLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSPAARKVDFMQGRLPPTLMPVM
                     SSVDRETRQLQLLLVMGVDDSLGGVIRLNGTLYPAFAVPSADNRHLVISALTDKGLRYA
                     GYGVAVNHDADSHISPAPELMQFHLKTREVPLFAAVNTPEKQPDHLFRSLGFNRTWEEW
                     QREEDARTHTTERRHDRGWSQ"
                     /name="MobA/MobL family protein"
     gene            2923..3177
                     /locus_tag="MM173_22965"
     CDS             2923..3177
                     /locus_tag="MM173_22965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UPY57061.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVVVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPEQ"
                     /name="mobilization protein"
     Typing          complement(2387..2745)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2746..2922
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.61e-88"
     Typing          2..340
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.23e-177"
     Typing          complement(601..2831)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.856"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gtatctgaca cagctcaagg ggcagtttac gcgggtagtc gtgaagaacg tctccagcct
       61 ttccagcacc tacagcatcc gcatttacga gctgctccag cagttccgca gcaccggtga
      121 cagaacgata gctatcgatg atttccgaac catgcttgcc gttgaagata aatatcaaca
      181 attcaaagac ttgaataaga tgataatcaa gccagccatc gccgaactga acgaaaaaag
      241 cgatctggtt gtaactgttg agacgatcaa aaaggggcgc acggttgtag ccctgcattt
      301 tcgcttcaag gaagacaaac agatcaagat gacgatctaa aatcgatttt aaggcaccta
      361 aaacgctccc tgctgcgttt tttttgtgtt agtagtgcga aggtactatt gaagtgaaaa
      421 attgcgtcaa aaacgctctg atgcagcgaa aaaagacccc caatttttgg gggcggaaaa
      481 acaaaactat gcttgcgtta tgtgagtgtg cttcttgcat tcatccctgt cgatgaacat
      541 cgaagaacat cgacgaacat aacacgatgt taaacaaaac aaaatattgt tcacattcac
      601 tgtgaccaac cgcgatcatg tctcctctcg gtggtgtgtg ttcgtgcatc ttcctcgcgc
      661 tgccattcct cccaggtacg gttaaaaccc agcgagcgga acagatgatc cggctgtttt
      721 tctggtgtgt tgacggcagc aaaaagcggt acctcacggg ttttcagatg aaactgcatc
      781 agttctggtg caggtgatat gtggctgtct gcatcgtgat ttacggcaac accataccct
      841 gcataccgta accccttatc ggtcagcgca ctgatgacca gatgcctgtt atcggctgag
      901 ggaacggcaa acgcgggata cagcgtacca ttaagccgga taacaccgcc cagagagtca
      961 tccacgccca tgaccagcaa aagctgaagc tggcgggttt cccggtcgac agaactcatg
     1021 accggcatca gcgtcggtgg cagacgtccc tgcataaaat ccaccttcct tgccgctggt
     1081 gatggcatgg ctggctggcg gtcttctcca agacagaaag actccggcca tgtcttcggc
     1141 tggcggagat tgcgggtatg ttgcggccat gtctggcaaa cctgcgtcag cagttgctca
     1201 aaggttgcag aggaataaac acgttgcagt ggcggacgtt ggccgatttc gcttcggtca
     1261 cagatataac cactcctgtc acgcattaaa tcaacactct caaagattct ggtgcggtat
     1321 ttctccagct cgttccccca gagcgtatat tctccgttcc ggttgtgaag cagaaggtaa
     1381 caggtcattt ccccgttacc aggcatggga gcctcgccat accccgtaac gactgctctc
     1441 agcacccctg aatccataac ggcattgtca tttttcctga gctgctccgc gcgactacgt
     1501 tcagtatctt cctgttcctt ccggcgcaat tcctcttcac gtttaagcaa ctgggctctg
     1561 agagctgcaa ggccggattc cccccactgc tgccactgtt tttcaaatgc catctgactc
     1621 gcgggaatgt cctgtttctc caccttccgg taatgctgtc gtaatttttc catttgctgg
     1681 ctcagagact ggatttttcc ctgctcacta cggtattccg gtgccgccca ttgcatcagg
     1741 ggaatacggg aaaaaccgga cgaaaacggc gatgattttt tcaggctggc agcatggctc
     1801 atcgcttcct ttcgttcggt gttcagctct tcccagcgtc tgcgcgtcgc ctgcatatct
     1861 gccatcatcg acatggcatt actggtgagt ttccatgccg agttactgtc cttcggcaac
     1921 gcttcgataa tgtcacgtag tgtgtacgaa gttgcgttgt caggaagccc gatattcaga
     1981 aggtcagcca cacggcgggc aggctctgtc agccctccgt tcctgagttc ggtgcgggaa
     2041 atctgtattt ccaggttaag cctgttaatc agacgattct gttcgccgcg ttctgtttcg
     2101 ataccgcgtg tttccatcgc acaggcagac tttccgaggt gaataccagg cgttttctca
     2161 agcccctgtc gctcgtatga acgatggtct atctcttcct gataaccggc gttcgccagt
     2221 gccctgtttg catggtcagc ccatgatgcc cgccacgtct cggcatgtgt ccggtcgttc
     2281 cagtccctga cctttccgct gaacccagca ggtccgatag ccctcgtggt cagcatgatg
     2341 tgcgcatggg gatttgtttt atccatgtga tggaacgcca catcagcaat catgccctga
     2401 ctgacaaagt tttctctgac aaaggcgaga acggtttccc gtgcggcatc ctgcggcagt
     2461 tcgtggggga tggcgagttc aatttcccgc gcaagttgtg agttcttccg gcgttcggcc
     2521 ttctcaacgg cattccagag ttcggcacgg ttcgtacacc aggcaggggc ggtggcgggg
     2581 gtcagaatca cagcctcagc cacaccgctt ttgcgggtgt agtcgtgagt cagtccggta
     2641 cgctcatcaa gcatcagtga accggaacga taggcagcgg aagctacggc gctgtagccg
     2701 ctgcttctgg agataatttt catgctgaga tgataaatcg ccatttctgc cgtaatgcct
     2761 ttttgtagtt ttctttcagc cccgcagggc gcacacaatc gaaacggagt ggagattgta
     2821 taagtgcgca cttcgtgatt tgccgtgcat tatgccagct cagtttttaa actaccagtg
     2881 acgcgctaaa atgcgatttt tcatcgcgca cggagttaca tcatgagcag aacgctcgaa
     2941 cagaagattg ctgatgctga ggcgagatta cagcgcctga aggcgaagag ccggagcctg
     3001 gacacagcgc agaaggttgt tgtgggtgct gcattgctgg caaaggtcag aaagccggaa
     3061 gaggtgcagt tgcgtgcctg gttactccag ttcctgaagg cagaggtgac acgacaggct
     3121 gatgtgacgc gcatactgcc gctgattaac gagctggagg cgctgccaga acagtgattg
     3181 tatcgtccgc tcgccgcagc cccagcgacc gagcgttagc gagcgagtgg gcgaggaagc
     3241 ggaagtgaat cagtcgccag gttgagcaca tacgcacggt ttttcggcag gtgatatgcg
     3301 ctgaacccgc atgaatactg ggtttccaca gggttggagg gggtgtattc gaaacttgca
     3361 attctgcttt attgcaacgc attgttttta ttggtttttt gttttcagca ccccaagtta
     3421 tccacaggct cgccgttaag tttttaagat cttattttta gatctttttt tttaaaacct
     3481 ttttaggtct tgtaacacca tgattttaaa gatgttctgg caagataagt ggagcttttg
     3541 ggggtgaaag gtggagcttt tgggggtgaa aggtggagct tttgggggtg aaaggtggag
     3601 cttttggggg tgtaatccac agaaaaaggg ggttgcaaaa aaaaaacttc cacccatatg
     3661 ataagtggcg tacagtaaaa aaacgccacc aatagcaacg agcaagcgaa atgtcagatc
     3721 tgatagctta caaatcaaac gcccttatcg aggcaagcta caagctcact ttgcaggaac
     3781 agcgcttcct gctggtctgt atcagccgcc tgaaatccgg agaagattcc ccttcgccgg
     3841 atgaacaaaa aaccatgacc atcacggctg cagagtttca tgatgccttt cctgacatgg
     3901 gacggcagca cgctgaagct aggctcaagg aagcgataga tcgcctctgg gacaggtcag
     3961 taatcatcaa gaacgaggaa aaacgagaag agttccgctg ggtgcagtac cgggcgcagt
     4021 atttcaaagg tgaggcgaaa gtagatatca ccttctccga tgccatcatg cc
//
