LOCUS       CP093125                3897 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2014AM-2067 plasmid p2014AM-1331_3,
            complete sequence.
ACCESSION   CP093125
VERSION     CP093125.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN05596277
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3897)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3897)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2014AM-2067_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 192x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:21:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,649
            CDSs (total)                      :: 4,524
            Genes (coding)                    :: 4,404
            CDSs (with protein)               :: 4,404
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 46 of 120
            Pseudo Genes (incomplete)         :: 90 of 120
            Pseudo Genes (internal stop)      :: 23 of 120
            Pseudo Genes (multiple problems)  :: 35 of 120
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3897
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2014AM-2067"
                     /db_xref="taxon:28901"
                     /plasmid="p2014AM-1331_3"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            join(2989..3897,1..123)
                     /locus_tag="MM167_23230"
     CDS             join(2989..3897,1..123)
                     /locus_tag="MM167_23230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPY52703.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWLVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSKNQADKGKVG
                     GKNSGVVRWTANDDKRRRALDMYILGASTEDIAVAVGVSRWTVRRWMDSSVEWLLSKQI
                     IKI"
                     /name="replication initiation protein"
     gene            complement(486..881)
                     /locus_tag="MM167_23235"
     CDS             complement(486..881)
                     /locus_tag="MM167_23235"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY52704.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            1061..2014
                     /locus_tag="MM167_23240"
     CDS             1061..2014
                     /locus_tag="MM167_23240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UPY52705.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            2026..2556
                     /locus_tag="MM167_23245"
     CDS             2026..2556
                     /locus_tag="MM167_23245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY52702.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPATGKSRKN"
                     /name="hypothetical protein"
     Typing          2990..3765
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.683"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          1062..2011
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tacatcttgg gagcgtcaac agaagatatt gcagtggcgg ttggtgttag ccgttggact
       61 gttcgacgct ggatggatag ctctgtagaa tggctactga gtaaacaaat aatcaaaatt
      121 taattaacaa aaagaataca tacccccccc tgttttgtta gttttttgtt aattttgggt
      181 gcacgaagca agcctatatc agataacagc gcctgaacgg gggtttggtg tttttttgcg
      241 cggcgtctcc gacccgctcc cacaccccca aaccaaatac cgaaaccctg caaaccaagc
      301 gagtggtggc tccgctcgcc gcagccctag cgaccgagcc gtcaggctcg cgagtgggcg
      361 aggaagcgga agataatcgg aagtcacatt gagcacttac gcacctatgc cagatccgcg
      421 cgtagcgcgt cgcgaaatcg aaaacattga acaccggcag gcaaacgcac caccacgcag
      481 cggaattaat gatgatctgg gcttgtttca agatcgagcc tgattgcctt aagtttctgt
      541 aatatattgt cttttgggta tctcagttcg cctgtttttg tgtccactag tccggcctcg
      601 atcagtaacc ccgccgcaag aaacaggcgg tgattgcgtt cccgtcgttg tgttttcccc
      661 tccatccgtt tttggttggc ctgtttgcga gcgttctcct gtgcctgtag ctcgtttttt
      721 tctgcggttg ccaggacgtg gagtagtttg cgctcctgtt ctgttagtcc ggcttcgtta
      781 tcgagcaggt caatgatctg cctctgtcgt gcggtctgtt ctccgagctt cctgataaag
      841 ccgattcgtt tcttcaacca gtcgatgttg ctgatgcgca tgtttgggat gctccctggt
      901 gttttttgcg gtgtgttggg gttgtgcagt atatcgcttg cggtgggtgg gtgcaggggg
      961 gtatcttccg tgctaattcg taaaattagc aggaagcgca cttatatgtt tcttcgccgt
     1021 tggctcagaa acatgtgcgc tcctgcggag ggctaacacc gtggcaacct atcacctcaa
     1081 tgtaaaattt ggcggcaagg gacaggccgg aaaccatgcc gattacatcg aacgcaaagg
     1141 cgagtacgag aaacgaaaag atctggaata ctcagagcac gggaatatgc caggctgggc
     1201 gcgagataat ccctcccatt tctggcaagc ggctgatcag tttgaacgtg cgaatggttc
     1261 gacttatcgg gagatcgaaa tcgccttgcc gcgtgaactg acaccggatc agcgcattga
     1321 actggtgcag gattttgtgc gtcaggtagc tggagaacgg cacgcctata gctttgccat
     1381 tcacaatcca aaagcgagca ttgacggagg ggaacagcct catgcgcata tcatgatgag
     1441 ccagcgtatt aacgatggta tggaacgttc gccggaacag tatttccggc gttataacgc
     1501 caagaatccc gaacggggag gcgcaaaaaa agattcaggc aatctgacac cgactcagca
     1561 aaaagagcaa ttgcggacgt tacgggcgag ctggtcagcg ttacagaacg agcatttagc
     1621 gcgtcatggt cacagggtgc gcgttgacca tcgctcactg gaagaacgcg gaattaaacg
     1681 cacgccagaa cggcatttcg gatttgccgc ctcatcacgg cttgatcatg cgcagcgccg
     1741 cgaaatcctg caaaaccgag cgcagccgct cgaacatttt ctagagaaag cgcattcggt
     1801 tcgccatcaa tttgatgcac aagttcagca aaaagagtta gttaaaacgc ttttacagga
     1861 cgtcgcacgg gagcgagggc acgcgcttac ggcaagaata aataaaacag gtgaagttga
     1921 atttgaacgt gcgccaacgc ggacgcggag taacacgcga gggcacggca tgggcattcg
     1981 tgacaactca cgcgggtacg actacgaacg ttaaaagggg actgtatggc gagtacagaa
     2041 gaggggttgc tcacgctctt gttgtccgtt gagcatttga aaaacactgc gatagaacaa
     2101 cagaaagcgg ttgcagacac gctggcggtc gcaagggaaa cactgcgggg gtatcgggat
     2161 atttctgaca gtgttgtaaa acaggttagc gatgaagtca gaaaaggggt acagaaaacg
     2221 gacattgcgg ggctgatggg tgagcgcatg acccaggatt ttcagcgtct tgaagagact
     2281 gtggcaaaga tgagagccaa cgcggaggcg cttaacaagg acattgcgac aattcatcac
     2341 aatgttgtta aagaatacaa cacgctcaat aaatacagtc tgaaatggtt tatcggtgtt
     2401 acggtcagtt ttctggtcat gttctcgttg cttggctggt ttaccaaaac gttgatcgac
     2461 aggaactaca ccgcgacgga ggtcgtgtat cagaaaattg ttgatattga aaagaaactg
     2521 gacaaaccag caacagggaa gagccggaaa aactgacgcg cttcgcttgt ccaacgcctc
     2581 acgggacgcg aaaaaattcc gcgtcccgtg aggcgttttc tgatgagaaa gtttgctgtt
     2641 ttgccccgtt cgcccttctg aacgctcgaa acagatcgcg cattgctttc gtgaatagtt
     2701 atgcaggctc atgaaaacga ttctgacgcg tttttctggc tttgcctggt gtttccttgt
     2761 ctttttgcgt tttttgcgcc agaaagcgat tgagggcgtt ttaaggggta cgtacaacag
     2821 gagttatggt aaatggatcg ggtttgcggg aagactcgac aggttttgtc gttgggggta
     2881 gtgtaagcga ctgaaaaaca aacgcccctg aaattcgtgt ctctccgcca agattgtcac
     2941 gaagatacag gggcgtgtgg gtcgtaacac acggaggaat cctaacacat gagcgccgcg
     3001 cttcaatact tcgaagaaaa tttacctcac cgtccctatc acacggatga tctcgctttc
     3061 ggccttcgca tctccggcaa agggcgtgcg cttcttgcgc ggtacatcca gcagaaccag
     3121 ccacatgcgc agttctggct ggtttttgac gttgaccgcg agggggcagc gattgactgg
     3181 agcgaccgga acgcccccgc gccgaacatc accgttaaaa atcctgtgaa cggacacgct
     3241 cacctgctct atgcactcaa tatcgccgtg agaaccgcgc ctgatgcgtc ggttaaggcg
     3301 ctgaaatatg ccgcagcggt tgaacgttcg ctgtgtgaga aactttgtgc ggatgtgaac
     3361 tacagcggct tgatttgcaa aaatccgttc cacctggaat ggctggtgat ggagtggcgc
     3421 gaggaagcct ataccctcga tgaactggct gattatctcg atttgagcgc ctcagcgcgt
     3481 cgtagcatcg ataaacatta tgggatgggg cgaaactgcc acctgttcga aatgacgcgc
     3541 aaatgggctt acagggcgat tcgtcagggc tggccagcat tctcacagtg gcttgatgcc
     3601 gtgatccagc gtgtcgaaat gtataacgca tcgcttcccg ttccgctttc accggctgaa
     3661 tgtcgggcta ttggcaagag cattgcgaaa tacacgcaca ggaacttcac gccggaaact
     3721 ttcgcacagt atgtggctga tacgcacacg ccagaaattc aggccgcacg aggtcgcaag
     3781 ggcgggaagg ccaattcgtc aaaaaatcag gcggacaaag ggaaagttgg cgggaaaaac
     3841 agcggtgttg tccggtggac ggctaacgat gataaacgtc gtagggcgct tgatatg
//
