LOCUS       CP093124                4633 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2014AM-2067 plasmid p2014AM-1331_2,
            complete sequence.
ACCESSION   CP093124
VERSION     CP093124.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN05596277
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4633)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4633)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2014AM-2067_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 192x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:21:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,649
            CDSs (total)                      :: 4,524
            Genes (coding)                    :: 4,404
            CDSs (with protein)               :: 4,404
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 46 of 120
            Pseudo Genes (incomplete)         :: 90 of 120
            Pseudo Genes (internal stop)      :: 23 of 120
            Pseudo Genes (multiple problems)  :: 35 of 120
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4633
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2014AM-2067"
                     /db_xref="taxon:28901"
                     /plasmid="p2014AM-1331_2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(885..1076)
                     /locus_tag="MM167_23200"
     CDS             complement(885..1076)
                     /locus_tag="MM167_23200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UPY52699.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1139..1462
                     /locus_tag="MM167_23205"
     CDS             1139..1462
                     /locus_tag="MM167_23205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UPY52701.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1671..2111
                     /locus_tag="MM167_23210"
                     /pseudo=""
     CDS             1671..2111
                     /locus_tag="MM167_23210"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2140..2700
                     /locus_tag="MM167_23215"
     CDS             2140..2700
                     /locus_tag="MM167_23215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UPY52700.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            2707..2940
                     /locus_tag="MM167_23220"
     CDS             2707..2940
                     /locus_tag="MM167_23220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UPY52697.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3668..4507)
                     /locus_tag="MM167_23225"
     CDS             complement(3668..4507)
                     /locus_tag="MM167_23225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY52698.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     Typing          713..797
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          complement(144..702)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.761"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1453..3038
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.811"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctctttgaac caaggtaact ggcttggagg agcacagcca ccaaatctgt cctttcagtt
       61 tagccttaac cggcgcataa cttcaagact aactcctcta aacggttacc aatggctgct
      121 gccagtggcg tttttacgtg tctttccggg ttggactcaa gacgatagtt accggataag
      181 gcgcagcggt cgggctgaac ggggggttcg tgcacacagc ccagcttgga gcgaacgacc
      241 tacaccgggc cgagatacca acagcgtgag ctatgagaaa gcgccacgct tcccgaaggg
      301 agaaaggcgg acaggtatcc ggtaagcggc agggtcggaa caggagagcg cacgagggag
      361 cttccagggg gaaacgcctg gtatctttat agtcctgtcg ggtttcgcca cctctgactt
      421 gagcgtctgt ttttgtgatg ctcgtcaggg gggcggagcc tatggaaaaa cgccagcggc
      481 gcggccttct tcctgttctt ggccttttgc tcacatgttt cttttggcgt tatcccctga
      541 ttctgtggat aaccgcatca ccgtctttga gtgagctgat accgctcgcc gcagccgaac
      601 gaccgagcgt agcgagtcag tgagcgagga agcggaagag cgcctgatgc ggcattttct
      661 ccttacgcat ctgtgcggta tttcacaccg catatggtgc acttttctta taatccgcac
      721 tgatgccaca tagttaagcc agtatacact ccgctatcgc tacgtgactg ggtcagggct
      781 gcgccccgac acccgctaaa acccgctgac gcgccctgac gggcttgtct gctcccggca
      841 tccgctcaca ggcaagctgt gaacgtctcc gggagctgca tgtttcagtt gctttcaccg
      901 tcatcgccga agcgtgcgag gcaactacgg tagagttcgt cggcgtggtc gtgaagtgat
      961 tcgcagatgt ctgcctgttc gtccgcgtcc agctcgttga gtttttccag cagggtcagc
     1021 gtctggcttc tgataaagcg ggccatgtta agggctgttt tttcctgttt ggtcatggtc
     1081 ttaaggctcc ttaatagggg attttttagg gggaatgata ccgatgaaac gcgagaagat
     1141 gctcacgata cgggttagcg atgaggagca cgcccggtta ctggaacgct gcgagggtaa
     1201 acgactggca gaatggatgc ggcgggtctg tctgggggag ccggttgcgc gcacaggaaa
     1261 actgccgaca ctatcgccgc cattgctgcg gcatctggct gccatcggga acaatctgaa
     1321 ccagacagcc cggaaggtga acagcggcca ctggtcttcg attgaccggg ttcatgtggt
     1381 ggccgcactg atggccatcg agggtgaatt gcgccagttg cggcaggctg tcagggaaca
     1441 ggggggacgg gatgatagtt aaatttcatg ccagggggaa aggcggtgga agtggcccgg
     1501 tcgattacct gctggggcgg gagcgtaacc gcgaaggcgc aacggtgctc cggggtaacc
     1561 cggaagaaat ccgggaactc attgatgcca cgccattttc gaagaaatac acgtcaggcg
     1621 ttctgtcgtt cgcggagaag gagttaccgc cgggtgaacg cgaaagagtg atgacgagct
     1681 ttgagcgtgt tcttatgccc ggtctcgaaa aagaccagta cagcattctc tgggtggaac
     1741 accaggataa ggggcggctc gaactgaatt ttgtcattcc gaacatggaa ctacagagcg
     1801 gtaagcgcct ccagccgtac tacgaccgtg cggacaggcc gaggataaat gcctggcaga
     1861 cgctggttaa tcatcattac gggctgcgtg acccgaacgc accggagaac agacggacgc
     1921 ttgtcacacc gaataatctg ccaaaagcga aacaggaggc cgcagaagcg attacacggg
     1981 gtcttgaggc gctttaccgt gccggagcaa taaaaacgcg tcaggatgtc actgaggcgc
     2041 tcacagcggc aggttttgag gtggtgagga caaccagaag cagtatcagt attgccgacc
     2101 cggagggggg gcggaatctc aggctaaagg gggcgctgta tgagcaatct tttacaaatg
     2161 ggaacagact tcgagaagaa actgaaagag cgagccgctt ctaccgagaa catgctgaac
     2221 agcgagttca ggaagctaga agagtctgta gacaaggcac tgagcttaaa caggcagaaa
     2281 atcagagacg ctatcagcga acatacaaca tccgtgaaac agcaactgga tacgctgagc
     2341 accaccgtga gcacgcagct cagcaccaca gaggccgaac tgtcccggca gcagaaaaac
     2401 ctgctctggc aggtgatcaa agggcgggta ctgtttccgg cgctgaccgc gctcagcgtc
     2461 acgggcggca ttttcctggg gtgctggggg ctgattcagt ggcaggaaag caggattgcg
     2521 aaaaatatct tgaccatcag agagcaggaa aacacgctgg cgaaactcga ggcaaaaacc
     2581 tggggggtga cgttcgtcaa tggcgagaac gggaaatttc tggtgctgcc ggacggggtg
     2641 aaaggggaaa acacctggac ggtgggcgac aagaacgccg tgaggctggt cagggagtaa
     2701 acgagtatga cggaactgga agggcatttg ctgaacgcct tagagcattt gcaacaggac
     2761 tatatgcggc ggctgaacga gtgggagagc gccttcgcag aattgcagaa gatgcacgcg
     2821 gttacgcaac agaacaacgc gatactgaac gagcgtgtcg tgaacttgag tcagcaggtg
     2881 cagctattag ccggacaagt cgaccgcttg agtcggttat ttatcacgaa caacagataa
     2941 gggatgaaca ggagcgtcag gcgcaggagc ttgcccggcg ctggcatgaa gagcaggaac
     3001 ccgaagcgcg gatctggcgt ggcccgtcaa tggggatgtg accggggtgc cccctgaaat
     3061 cgagccagtt tgtggcacgc cctacccgga tggcgccaat gttaatgtac gtacattagc
     3121 attaacaata tccaaacctc cccattttgc cccgttcgac ggctggaacg tgcgaaactg
     3181 atcgtcattc agtttcgcgc ataactatgc atgaggttaa aatttaccag gcgcgatcgc
     3241 ggcagttttt cgggtggttt gttgctgttt ttacctgtct gctgccgtga tcgcgctgaa
     3301 cgcgtttaag cggtacgcgc aatgcgacgt tatggtaaat acggagtatt ttaattgcgg
     3361 gaattaaaac aacaaaggcc cgctgtactc tatacagcgg gcctttgttg tatatctctg
     3421 tcgtttgtcc ccggggggaa gcattactgc taacaagtcc cgtgagaaaa ctgcgcaatc
     3481 gtattgcgca ccatgaacct attctcaacc gcaatctgga ggatgatttt gctacgataa
     3541 agagaattat cgcgtatcgg tgtcagcatt cattggagtg gatgctgaaa aaccaggtgt
     3601 tactccctct acttacactt aaacctctct aaaaatataa gtaagtacta tcgagggcta
     3661 tcatgaacta tggtgccctc tgagcatagc tacccattac ttcttctatg tcattgaata
     3721 attcatttct taactctaag tattctagta actccatttc taatgactct gtcgtgaact
     3781 taaatctaga aggatctttg attgagttta ctagtcttga taacgctcta tatgttttga
     3841 gtgaaggttg cattatagat ggaaagtatt tgaaaacctc ttcatctctg ttgaaattaa
     3901 ctaaaaactt gtagtcatca tttataaatc tcaagcatac agcgtcaagc ttatcgcctt
     3961 ttcttattat tatttcttta taggaaagat atttttcaga agataagtcc cacatcaagc
     4021 gaaaatctct ctttgcgaac gagttcgcgt catcattgaa aagagatgat gtgatggctt
     4081 tggatagacc ttctgtgttt atctctttgt tggatgggta gtaaatttta ttaattgctt
     4141 tcattctctc aaatgatgaa tataggtcat tatgccacct tgttgaaatc acccctttag
     4201 ttatattctc cttgctaaaa ttaagccctg tatcaaaaat aaatgcagcc atcagtgaat
     4261 atgatatgtt ttttattaac tcagacttaa atggttccgc tatggagtag tacagtgata
     4321 aaataactaa aaataaaagg tattgtctta cctttcccga tgagtatatg taaaggcgat
     4381 atttatttat tgatagtttt attttgtatg gaatgatctc atttctgtca tatcctcttc
     4441 gtggtggagc aaaacaaaag aaacatgcag ctattaataa aacaaaaaag atgaacagtg
     4501 taagcaagtt cggctcctgt gtatgctcac tatgcatgat tgtcttgaga tctaacgatc
     4561 ctgaaggtag tcttgtccgt aaacgaaaaa accgcccagc aaggcggctt ttcgaaggtt
     4621 ctcagagcag caa
//
