LOCUS       CP093123                5631 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2014AM-2067 plasmid p2014AM-1331_1,
            complete sequence.
ACCESSION   CP093123
VERSION     CP093123.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN05596277
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5631)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5631)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2014AM-2067_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 192x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:21:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,649
            CDSs (total)                      :: 4,524
            Genes (coding)                    :: 4,404
            CDSs (with protein)               :: 4,404
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 46 of 120
            Pseudo Genes (incomplete)         :: 90 of 120
            Pseudo Genes (internal stop)      :: 23 of 120
            Pseudo Genes (multiple problems)  :: 35 of 120
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5631
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2014AM-2067"
                     /db_xref="taxon:28901"
                     /plasmid="p2014AM-1331_1"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(220..543)
                     /locus_tag="MM167_23160"
     CDS             complement(220..543)
                     /locus_tag="MM167_23160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UPY52696.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            608..799
                     /locus_tag="MM167_23165"
     CDS             608..799
                     /locus_tag="MM167_23165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UPY52693.1"
                     /translation="MTKQEKTALNMARFIRGQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(822..1142)
                     /locus_tag="MM167_23170"
     CDS             complement(822..1142)
                     /locus_tag="MM167_23170"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY52694.1"
                     /translation="MDNRVSVFEKGESARRSRTTERSESVSEEAEERLNWHFLLTHLCG
                     ISHRTWRTFHTIRTDAEWLSQYTLRYRYVTGSGLRPDTPKVNGLTRPGGLVCSRHPLTD
                     KL"
                     /name="hypothetical protein"
     gene            complement(2002..2868)
                     /locus_tag="MM167_23175"
     CDS             complement(2002..2868)
                     /locus_tag="MM167_23175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001335763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="UPY52695.1"
                     /translation="MIKGMLFAFLAAFSWGAAIVMSKKGVEELDAGGVFFWQICSAVIL
                     SWIVLFIKRKKLPLNSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLESVFI
                     LVLSVLICSVKINSPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVVAGVLSAAF
                     YVVISSRLIKSFEPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGILQYF
                     LAFCFYLNSLRWLPVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVGFIVTVLSVYFL
                     NRKYSEE"
                     /name="DMT family transporter"
     gene            complement(2870..3922)
                     /locus_tag="MM167_23180"
     CDS             complement(2870..3922)
                     /locus_tag="MM167_23180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY52690.1"
                     /translation="MNLQQRINKLPQLSSSFSFGKDIDNIHSFIFNETSKDKIEDLLRK
                     WVSGNQPCVFGKLASKKIKGLDFHLSIVNSPQLYNDDGHLFDFLRNERVRFKERARRGE
                     VSAHLIYFIHPQLAFARPSEELVDIQKYICSLHMPECYPIKEDVIYTESVPFQDKDGLK
                     IYKAGVNVFYSSAHRTRNHDRRIPGGILISVNAPGHFMRLAIEKGFYKDQEQALADIRN
                     MTIQSVGKGGYSHPEGISTTWHSESNLDRFGCPVHTGNSSYYSGFYHTDVLIPGELTKD
                     ERLLHEIENSDPMIFNWNVLFYVSLEEFPIDDPYYGEFIGIPVDDASMFFNSFQPRKFE
                     NKPLYEKEDD"
                     /name="hypothetical protein"
     gene            complement(4403..4636)
                     /locus_tag="MM167_23185"
     CDS             complement(4403..4636)
                     /locus_tag="MM167_23185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UPY52691.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(4643..5173)
                     /locus_tag="MM167_23190"
     CDS             complement(4643..5173)
                     /locus_tag="MM167_23190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UPY52692.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDAHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="MbeB family mobilization protein"
     gene            complement(5211..5618)
                     /locus_tag="MM167_23195"
                     /pseudo=""
     CDS             complement(5211..5618)
                     /locus_tag="MM167_23195"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     Typing          complement(894..975)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          complement(1432..1619)
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          complement(224..576)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.458"
                     /coverage="100.0"
                     /evalue="3.2e-69"
     Typing          complement(4300..5630)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 aagctcgcca tcactttttc acgccctcca ggcggcagct ccttctccgc gaacgacaga
       61 acacctgacg tgtatttctt cgcaaatggc gtggcatcga tgagttcccg gacctcttcc
      121 ggattcccct gaagcaccgt tgccccttcc cggttacgct cccttcccag caggtaatca
      181 accggaccac tgccaccacc ttttcccctg gcatgaaact taactatcat cccgcgcccc
      241 ctgttccctg accgccagac gcagccggcg cagctcatcc ccgatggcca tcagtgcggc
      301 caccacctga acccggtcac cggaagacca ctgcccgctg ttcaccttcc tcgctgtctg
      361 gttaaggtta ttcccgatgg cggccagctg acgcagtaac ggcggtgcca gtgtcggcag
      421 cttcccggaa cgggcaaccg gctcacccag gcagacccgc cgcatccata ccgccagttg
      481 tttaccctca cagcgttcca gtaaccgggc atgttcatca tcagtaaccc gtatcgtgag
      541 catcctctcg cgtttcatcg gtatcattac ccccatgaac agaacccccc cttacacgga
      601 ggcatcagtg accaaacagg aaaaaaccgc ccttaacatg gcccgcttca tcagaggcca
      661 gacattaacg ctgctggaga agctcaacga actggacgcg gatgaacagg cagacatctg
      721 tgaatcgctt cacgaccacg ccgatgagct ttaccgcagt tgcctcgcac gcttcgggga
      781 tgacggtgaa aaccgctgac acatgcagct cccggagacg gtcacagctt gtctgtgagc
      841 ggatgccggg agcagacaag cccgccaggg cgcgtcaggc cgttgacctt tggggtgtcg
      901 gggcgaagcc ctgacccagt cacgtagcga tagcggagtg tatactggct taaccattcg
      961 gcatcagtgc ggattgtatg aaaagtgcgc catgtccggt gtgaaatgcc gcacagatgc
     1021 gtaaggagaa aatgccagtt caggcgctct tccgcttcct cgctcactga ctcgctacgc
     1081 tcggtcgttc ggctgcggcg agcggactct cctttctcaa aaacgctaac cctgttatcc
     1141 acagaacccg gggataaacc aggaaagaac atgtgcgcaa aaaacgaaac cccgggaaag
     1201 gccgcgccgg aggcgctttt tccataggct ccgcccccct gacggacttc acaaaacaga
     1261 cactttttcg gtgcatctgt gggagccttg cggctcaacc atgaaatccg ccagcggtgg
     1321 cgaaacccga cgtggcttaa agatcatcac cgtttccggt gaatcgctcc ctcctgcgcc
     1381 cccacgttcc cgccatatcg attaccggat accttttccg cctttctccc ttacgggaca
     1441 cgtggcgctt tctcatagct cacgtcttct ggtatctcgg ggcgacttag gcagttcgct
     1501 ccgggctggg ctgtatgcag gaaccccccg ttcagcccga ctgctgcgcc ttctccggta
     1561 actgttctct tgggtccaac ccggaaaaga caccacaaag cgccactggc agcagccatt
     1621 ggtaaaagtc atgtgcgaga tatttagaga gtacttgaag tggctgccgg agtgcggcta
     1681 cactagaaga acaattttgg tgactcgtct cgcataagac agttacctgg ttaagcagtc
     1741 tgcaagctga cttaaccttc gatcaaaccg ccctgcaagg cggttttttc gtttacaggc
     1801 agcagattac gcgcagaaaa aaaggatctc aagaggatcc tttgatcttt ttgttacaaa
     1861 cgtctctatt tgactcccct gagagcgttt tagcgcgcct ctgaccccct tggttacatt
     1921 ccgacaccag aaacgctccc gttttttacg tgcatttggc acggtatcga tggaggccgg
     1981 ggggcaatcc tgaacagaat gttactcctc tgagtatttt ctgttaagaa aatatacact
     2041 tagcacagtt acaataaatc ctaccccctg taagaatgtg aattgttcat ccaaaaacaa
     2101 ccatgacaaa aataatgcaa ctagcggaat aaagtacaac attatccctg ccaaatgaac
     2161 tgggagccaa cgcaaggagt tcaagtaaaa acaaaaagct aaaaaatatt gtaatattcc
     2221 agatgaaaaa acaataatca cggattccaa cggaagataa attgatgatt tagatataaa
     2281 aataaagagc gatgacagta taagggagaa tgtcaactgt ccgctcaata atgtgatagg
     2341 ctcaaacgat ttaataaggc gagacgatat aacaacataa aatgctgccg ataacacacc
     2401 ggcaacaaca agacaatatc caacaatatt attcgatcca ttactgatgt ctggcaaggc
     2461 taccaaaata ctgccaacaa ttgcacctat aaggaacaat ataaaatatt gcggggaatt
     2521 aattttaact gagcaaataa gaacagacaa caccaatata aacactgatt caagtgaaaa
     2581 aataattgat gcgcttcctg ctgaaataaa ataaagtccg tagagtgtaa aagtatacgc
     2641 taagaatggt tcaaaaacgc ctgtcgcata agcaagtatc gcttttgagt ttaatgggag
     2701 tttttttctt tttataaaaa gaactatcca agatagtatt actgcactac aaatctgcca
     2761 gaaaaacacc cctccggcat ctagttcttc aactcctttt ttgctcatta cgatagctgc
     2821 cccccatgag aacgctgcta aaaaagcaaa aagcattcct ttaatcatat taatcatcct
     2881 ctttctcata aaggggtttg ttttcaaatt tccttggttg aaaggagtta aaaaacatag
     2941 atgcatcatc tacaggaata ccaataaact ctccataata aggatcatct ataggaaact
     3001 cttctaatga aacataaaac aatacattcc agttgaagat cattggatca ctattttcta
     3061 tttcatggag caatctttca tccttagtta attctcctgg aattaataca tcagtatgat
     3121 aaaaaccgct gtaataagaa ctattaccgg tgtgcactgg gcatccaaaa cgatccaaat
     3181 tagattctga atgccatgtt gtagaaatcc cttccggatg tgaataccca cccttaccaa
     3241 cagactgaat agtcatgtta cgaatatccg ctaacgcttg ttcttgatct ttatagaaac
     3301 ctttttctat cgccagcctc ataaaatgcc ccggggcatt tacagaaata agtattcccc
     3361 ctggtattct tctatcatga tttcttgttc tatgagcaga agagtaaaaa acattaacac
     3421 cagccttata tatttttagc ccatctttat cctgaaatgg tacgctttca gtataaataa
     3481 catcctcttt tattggatag cactctggca tatgcagcga acaaatatat ttttgtatgt
     3541 ccactaactc ttctgatgga cgagcaaagg caagttgtgg atgaataaaa taaatgagat
     3601 gcgcactgac ctctcctctt cttgcgcgtt ctttaaaacg aactctttca ttacgcaaaa
     3661 aatcaaacaa atgaccatca tcattatata gttgggggct atttacaata gataaatgga
     3721 aatcaagccc tttaattttc ttgcttgcca atttaccaaa tacacagggc tgattgcctg
     3781 acacccattt tcttagtaaa tcttcaattt tatctttaga agtttcgtta aagataaatg
     3841 aatgaatatt atcaatatct tttccaaatg aaaaactgga tgataattgt ggtagtttat
     3901 ttatacgttg ttgaagattc atgaaagctc ccacaagaca cctcatatat ttttttatat
     3961 actgaaacta cattatattt attaccggcg taaaacgaaa taatttatta tcgttaccga
     4021 tattttaaaa aaatcattat ttgcacagtg ttcgagttgt tagtatcact ccttcctgaa
     4081 aatccgctcc atttaccata acgtcgcatt gtacgcaccg ccaaaacgcg ttcggtgcga
     4141 tcacggcagc agacaggtaa aaatggcaac aaaccacccg aaaaactgcc gcgatcgcac
     4201 ctgataaatt ttaaccgcat gaatacctat gcaaccagat gctacaggcc acattagccc
     4261 gccttaatcc actgaacacg tcatttttca tggtttcacc atcccagcga agggccatcc
     4321 agtgtccgct cctggatttc cggctgacgc tcccgctcca gagataactc atgttcgcgt
     4381 tcctgcatca gccgttcatc ccttatctcc tgttctcgct gtataactgg ctcaagcgtt
     4441 ctgtccgctc gctcaagtgc tgcacctgct gactcaactg catgactcgc ccgttcagca
     4501 tcgcgttgtc ccgttgcgta agcgaaaaca ttttctgcaa ttccacgaag gcgttctccc
     4561 attcgttcag ccgctgcata tagtcctgtt gcagttgctc taatgcgttc agcaaatgtc
     4621 tttccagctc cgtcatgctc tgtcactcct gcaccagtct cactgcgttc agtttgccgt
     4681 tgtccttcgt ccagttcgtt tcggctttca tccccttcgg caacaccaga aaacgtccgt
     4741 tgctgtcctc gtgataacgc acgccccatg tcttcgcgtt cagcttctcc agactctctt
     4801 tctgctcgcg gagaatattc atattcgcgt ttatcttcat gccctggtac cacagcagac
     4861 tcccggtcgt ggcaaacatc agtactgaga cgataatcag ccacagccag cgtttcacgc
     4921 tcattttcag tacggttttc cagtgcgcgt ccatcgtatc gacggtcgtt ttctgatacc
     4981 tctccagcag ttctttcagg gctgttgtat ggtcgttgat agcgttcctg attaaagatt
     5041 cgtttgaggt cagttccctg tttacagatt cttcgagctt cctgaactcg tcgttcagca
     5101 ttttctctgt agattcggct ctctctttca gctttttctc gaactccgcg cccgtctgta
     5161 aaagattgct cataaaacgc tcctttcagt ctgatattcc tcccgccgtt cgggtctgca
     5221 atgctgatac tgcttcgcgt caccctgacc acttcaagcc ccgcctctgt gagcgcctga
     5281 atcacatcct gacggccttt tatctctccg gcatggtaaa gcgcgtctat cccgcgtgtg
     5341 acgccctcag caagcgcctg tttcgtttcc ggcaggttat caggaagggt cagcgtccgg
     5401 cggttctccg gggcgttggg gtcatgcaga ccgtaatggt gattcaccag cgtctgccag
     5461 gcatcaattc tcggcctgtc tgcccggtcg tagtacggct ggaggcgttt tccggtctgt
     5521 agctccatgt tcggaatgac aaaattcagc tcaagccgtc ccttgtcctg gtgctccacc
     5581 cacaggatgc tgtactgatt tttctcgaga ccgggcatca gtacacgctc a
//
