LOCUS       CP093121                3904 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Hadar strain 2015AM-0414
            plasmid p2015AM-0414_1, complete sequence.
ACCESSION   CP093121
VERSION     CP093121.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN07268462
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Hadar
  ORGANISM  Salmonella enterica subsp. enterica serovar Hadar
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3904)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3904)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2015) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 3904)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2015AM-0414_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 148x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:25:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,679
            CDSs (total)                      :: 4,551
            Genes (coding)                    :: 4,429
            CDSs (with protein)               :: 4,429
            Genes (RNA)                       :: 128
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 47 of 122
            Pseudo Genes (incomplete)         :: 85 of 122
            Pseudo Genes (internal stop)      :: 28 of 122
            Pseudo Genes (multiple problems)  :: 34 of 122
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Salmonella enterica subsp. enterica serovar
                     Hadar"
                     /mol_type="genomic DNA"
                     /strain="2015AM-0414"
                     /serovar="Hadar"
                     /isolation_source="stool"
                     /sub_species="enterica"
                     /db_xref="taxon:149385"
                     /plasmid="p2015AM-0414_1"
                     /geo_loc_name="USA"
                     /collection_date="2015-01"
                     /collected_by="CDC"
     gene            join(3182..3904,1..828)
                     /locus_tag="CEY97_23385"
     CDS             join(3182..3904,1..828)
                     /locus_tag="CEY97_23385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UPY48300.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARYGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPELLLQYR
                     KVMKTVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARYLDKLGR
                     NVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRNKL
                     QQAESEWDKENAAFKRTEGYKYVGDLDRYREREILAAASLENTRQKVAEEVSVARSQML
                     SLEPELSISGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWAREASRSNERDQDMER"
                     /name="MobA/MobL family protein"
     gene            1284..2303
                     /locus_tag="CEY97_23390"
     CDS             1284..2303
                     /locus_tag="CEY97_23390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPY48301.1"
                     /translation="MSAALQYFEENLPRRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKF"
                     /name="replication initiation protein"
     gene            complement(2564..3010)
                     /locus_tag="CEY97_23395"
     CDS             complement(2564..3010)
                     /locus_tag="CEY97_23395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="UPY48299.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWERRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     Typing          1285..2059
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.613"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          2..825
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="88.809"
                     /coverage="100.0"
                     /evalue="8.960000000000001e-132"
     Typing          3183..3904
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.361"
                     /coverage="95.0"
                     /evalue="1.94e-154"
ORIGIN
        1 ctcaagaccg ccagagatgc cgcaaatgcc attcagcagg aacaggagca aaagcaaaaa
       61 atcaaggcag ttgagcctgt tcgttcagcc cgttcaccgg agttattgct tcagtaccgc
      121 aaggttatga aaacggtcat tcagggagaa gcaaggcttg ctcgtttagg ggatgccaat
      181 cccaatgcgc tcaaagaaca taagctgctt cagaatgcga aagcaaaaaa agactctctt
      241 tccgaatgga gcaggcgaat atatgaaggg gcacggtatt tagacaaact ggggcgtaat
      301 gtcgtttccg cacaaaggga gctgcgggag ctacaggaac aacgcaatgc tttgaatggg
      361 attcgtggcc tgtttcgggg ggctgacaaa agggagattg atgcgcgtat tctggagcaa
      421 aaaagtgtgc tggaaaccgc tgaacatgaa aggaatgaat tcaggaacaa gctacagcaa
      481 gccgaatccg agtgggacaa agaaaacgct gcttttaagc gtaccgaggg atataagtac
      541 gttggggatc tggacaggta cagagaacgt gagattctgg ccgcggcatc tttagagaat
      601 accaggcaaa aggttgctga agaagtatcc gttgcccgta gccagatgtt atctctggag
      661 cctgaactca gtatatctgg agatgaaaaa gctcaaatgc gacatgagtt actggcagaa
      721 atggcgcagg aacggcagca acaggaggaa aaggcactgc gtatacagcg atcctgggcc
      781 agggaggcat cacgtagtaa cgaacgtgat caagatatgg agcgttgaaa atgtagcaat
      841 atcgggactg cgccccgaac cccgccaacg tttcacggaa cgcgaaaaaa ttccgcgtcc
      901 cgttcaccgt tttctgatga gaaagtttgc tgttttgacc cgttcgccct tctgaacgct
      961 cgaaacagat cgcgcatcgc tttcgtgcat agttatgcaa cgctctgaaa acgattctga
     1021 cgcgtttttc tggtttggcc tggtgttttc ctgtcttttt gcgttttttg cgtcaggaag
     1081 cgactgaggg cgttttacgg ggtacgtaca acaggagtta tggtaaatgg atcgggtttg
     1141 cgggaagact cgacaggttt tgtcgttggg ggtagtgtaa gcgactgaaa aacaaacgcc
     1201 cctgaaattc gtgtctatcc gccaagactg tcacgaaaat acaggggcga tgtcggtcga
     1261 taacctggaa ggaatcgtaa cacatgagcg ccgcgcttca atacttcgaa gaaaatttac
     1321 cccgccgtcc ctatcacacg gatgatctcg cttttggtct tcgcatctcc ggcaaagggc
     1381 gtgcgctgct tgcgcggtac atccagcaga accagcctca tgcgcagttc tggctggttt
     1441 ttgacgttga ccgcgagggg gcagcgattg actggagcga ccggaacgcc cccgcgccga
     1501 acatcaccgt taaaaatcct gtgaacggac acgctcacct gctctatgca ctcaatatcg
     1561 ccgtgagaac cgcgcctgat gcgtcggtta aggcgctgaa atatgccgca gcggttgaac
     1621 gttcgctgtg tgagaaactt tgtgctgatg tgaactacag cggactgatt tgcaaaaatc
     1681 cgttccacct ggaatggcag gtgatggagt ggcgcgagga agcctatacc ctcgatgaac
     1741 tggctgatta tctcgatttg agcgcctcag cgcgtcgtag catcgataaa cattacggga
     1801 tggggcgaaa ctgccacctg ttcgaaatga cgcgcaaatg ggcttacagg gcgattcgtc
     1861 agggctggcc agcattctca cagtggcttg atgccgtgat tcagcgtgtc gaaatgtaca
     1921 acgcatcgct tcccgttccg ctttctccgc ctgaatgtcg ggctattggc aagagcattg
     1981 cgaaatacac gcacaggaac ttcacgccgg aaactttcgc acagtatgtg gctgatacgc
     2041 acacgccaga aattcaggca gcacgcggtc gcaagggcgg gaaggccaat tcgtcagaaa
     2101 atcagtcgga caaagggaaa aaaagcgccg ctgttcggtg gactgctaac gacgacaaac
     2161 gtcgtagggc gcttgatatg tatatcttgg gagcgtcaac ggaagatatt gcagtggcgg
     2221 ttggtgttag cagccggact attcgacgct ggatggataa ttctggagaa tggttaacca
     2281 agaaacaaat aattaaattt taattaacag aaaaatgaca attaccccct gtttttgtta
     2341 atgggtggtt aaattcgcgg acatgaacaa gcctatatca gataacagcg cctttcggcg
     2401 tctttttgag cagcgggctt tccggcggtt ttctcctgtc agcccagcaa tggtgcggct
     2461 taccgcatga ttgaggtggt tgtgctcgcc gcagtctcat gaccgagcgt agcgagcgaa
     2521 tgagcgagga agcaccaggg aaacggaacg tgaacggagg ctcttacgca ctgtctttgg
     2581 ttagtagctc cttcccgcgt ctttcccatt cctgccattt tgggtggttg cgcggtagct
     2641 ctgcgattcc tgcgagtgcg cctaccagtt cggcagcact aaactttggt tttccggttt
     2701 tgctgtccac cagtcctgcc acaatcatga ggcctgcggc cttgtagagt tcatgatccc
     2761 gcgcctttcg ttccgccctt gcggctgcct tccgttctgc cgctatgatt gccgttaccc
     2821 tggcttttgc tgcggctgct ttctctgcgg ttttttctgc ccgtatcagt gcggacaacg
     2881 ttttttcatc cgtcgttgtt cggttttttt tctctgccag taacacaagt aatctctgct
     2941 gctctgacgg tgatttcagt ccgttgatgt aggcaatttt tgcacttaac cactcttcac
     3001 gatttgtcat tcttacctct gcatttttgc cgttaatgtg agttgttatt gtgcataata
     3061 tcaccttgtc tgcctgcgtg tgagaccgta aaatcatccc tgattaattc agggatgcgc
     3121 acttagtagt ttctctcctt cgtcgagaaa ctgtgcgctc ctgcggaggg ctaaaaggca
     3181 gatggcaagc taccattgca ccgtcaaagc tggagcaaaa ggcagtgcct taaaacatgc
     3241 tgattacatt tccagatccg gcgaatataa gagctacaaa tcgcgggagg atctggaatt
     3301 ttcgtcatca ggtaacatgc catcatgggc gaagaaaaat cccgcagagc tatggaaagc
     3361 cgcagatgaa tttgaacgaa aaaacgggac tgcataccgt gaaattgaga tcgcgttacc
     3421 gcgtgaactg acacgcgaac aacggataga acttgttgaa gatttcgtgc aaaaggaact
     3481 tggcgatcgc catgcctacc agtacgcgat ccacaatccg ccaggtgcaa tcgacggaaa
     3541 ggaacagcca cacgcgcata tcatgttttg cgagcggatt aatgatggta ttgaacgcga
     3601 tccgcagcaa ttttttaaac gtgccaacag caaatcacca gaacggggag gcgcaaaaaa
     3661 agcgagtatt ccccagacag ccggagagcg aaaagccgcc cttgttgcgc tgcgttcccg
     3721 ctgggcagat gtgcagaatg agcaccttgc gcgatacggt cacgagtcgc gcgtagatca
     3781 tcgttctctg aaagaacagg gtatcaatcg cacgccggaa gttcatcttg gccccgttca
     3841 ggccgccagt ctcaatggtg agcagattgt tgcaatccag gaacggagga atgccgagcg
     3901 ggaa
//
