LOCUS       CP093118                2295 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2016AM-0673 plasmid p2016AM-0673_2,
            complete sequence.
ACCESSION   CP093118
VERSION     CP093118.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN13512702
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (10-DEC-2019) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 2295)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2016AM-0673_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 143x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:19:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,545
            CDSs (total)                      :: 4,420
            Genes (coding)                    :: 4,310
            CDSs (with protein)               :: 4,310
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 44 of 110
            Pseudo Genes (incomplete)         :: 83 of 110
            Pseudo Genes (internal stop)      :: 22 of 110
            Pseudo Genes (multiple problems)  :: 35 of 110
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2016AM-0673"
                     /db_xref="taxon:28901"
                     /plasmid="p2016AM-0673_2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            525..1535
                     /locus_tag="GPA80_22710"
     CDS             525..1535
                     /locus_tag="GPA80_22710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006859061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UPY34850.1"
                     /translation="MKNPDSPILSLRDYSTQDSKWDSDRARADQVAKIYASDQQFSRRG
                     ERMFDCSQRLQFAPQSSRLTGEMRLALRHGEFCHVPFCPVCSRRRSLRWMRRLWEALPK
                     LLAENPTARWLFLTLTVKNPPVGELRETLKQMNAAWERLTKRKEFAPVLGWLRSTEITY
                     GNVLGGCHPHFHVVLWVPSSWFKRDYVKHERWVEIWSECLRVDYAAGAHIKRVRPKRGS
                     VPEGASAAEVQRAALEAGVIETLKYTVKSSEIVRDPAWFLELARQTYGLRMIATGGRFR
                     EILQVEKPETDEDLIGADMPAKPDEFEEMAFWLAFDWRRDEKRYKRNPRADRRKD"
                     /name="protein rep"
     Typing          complement(1773..1852)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="88.889"
                     /coverage="89.0"
                     /evalue="7.06e-19"
ORIGIN
        1 caaacagaaa atcgcggggt cccgcgcctc cggcgtgggt tccgattttg tgattgacga
       61 cggcacggga aaaacactgg ggatggtggt tggtgtcacg cagtgaggcc aaccacctgc
      121 aagacggttt tttgttgttc acaaaatcgg ggtgaaagtc tgtggatgaa atgggtgtaa
      181 gtgggtgggg ttgggaggtt ttgggttact gaaaatcccg ctcaaaattc aagcaaatct
      241 cgatcgcgat ccttgtattt atactatagg caacaactcg aggattggtt ttccctgttc
      301 agcccagtgc tggcgcgggt ttgagggggt tttggtttgt ggatgttttg attgcgtctg
      361 cggggctttt tggctaccgt gtgagcaaca ggttggtgag gttccccggc agtgcgctaa
      421 caccccgggg gtgaccacct gaaaggtaaa attcgatgag atcaacacag gtggtaagaa
      481 catgctaaca caagatttct gcccctgccc actgggggcg ggttatgaaa aatccagata
      541 gtccgatcct ctcactgcgt gactacagta cgcaggattc aaaatgggac agcgatcgcg
      601 cgagggctga ccaggtggca aagatttacg cgtcagacca gcagttttcc cgtcgcggcg
      661 agaggatgtt tgattgcagt cagcgtttac agttcgctcc gcaaagttcc cgtcttacag
      721 gcgagatgcg gcttgcgctg cgtcatggtg aattctgtca tgtccccttc tgtccggtgt
      781 gcagccgtcg ccgctcgtta cgctggatgc gtcgtttgtg ggaggcgcta ccgaaactac
      841 tggctgagaa ccctaccgcg agatggctct ttctgaccct gaccgtaaaa aacccccccg
      901 ttggtgagtt gagagagacg ctcaagcaga tgaatgcggc ttgggagcgt ttaaccaagc
      961 gtaaagaatt tgcgcctgtt ctgggctggc tgcggagtac ggaaatcacc tacgggaatg
     1021 tactaggggg ctgtcatccc cactttcacg tggtgctctg ggttccttcg tcgtggttca
     1081 agcgggatta cgtgaagcat gaacgctggg tggaaatctg gagcgagtgc ctgcgggtgg
     1141 attatgcagc gggggcgcac atcaagcgcg tgcggccaaa acgcgggagt gtaccggaag
     1201 gagcaagcgc tgcagaggtg caacgggcgg cgctggaagc gggggtgatc gagacactga
     1261 aatacacggt gaaatcctcg gaaattgtgc gcgatccggc gtggtttctg gagcttgcgc
     1321 ggcagaccta cgggctgcgg atgattgcca caggaggacg gtttcgggag atcctccagg
     1381 tcgagaagcc ggagacggac gaggatttga ttggtgcgga catgccagcg aagccggacg
     1441 agttcgagga gatggcgttc tggctggcgt tcgactggag gcgggacgag aaacgctaca
     1501 agcggaatcc cagagcagac aggcggaagg attgagcgcg tttctgaggc gcatagtggg
     1561 atggtgcggc agtggaggtg aaacgcgctc agaagtgttc taacgtgatt ttcagaaaca
     1621 ggcaaggatt tgcccgtttt ttcgttttaa ggcgctcaga agcgttttga gcgcgtttct
     1681 ggtgcttgat gctacgcaaa ccatcccctt ggtctgttga ttgccaaaaa cgcgcgtatg
     1741 tcgttttaac gtgtctctgg tacggtgtcg agggtgtcgg ggcgcagccc tgaccagggg
     1801 caattgtgat agcgtcgcgt gcgacggtat tacaattaca catcctgtcc cgaaaattcc
     1861 cgccgtttct cggttttttg agtatcgcag atcgcacgac aaacgaaacg aagtgaagtt
     1921 tgtataagtg cgcacttcgt gggttttctg tgccgccagt ttgtcgatcg tgtgacgtag
     1981 ctcctgcaca aaaacggcaa aatgatttgc tgtccggttg ccagaattca tccgcgcgtt
     2041 aagtgcggat gtgcacttag tagtttctct ccttcgtcgg gaaactgtgc gctcctgcgg
     2101 agggcttaac ggcgcagaac tgccgacgct ctgccagcgt tctggtgaaa aaatcgggac
     2161 aagatacatg tttgtattcc cgccacacgg tcggtaatac aaactccacc aggtcagggc
     2221 tgcgccccga caccccgcca acgccttacg gcacgcgaaa aaattccgcg taccgctcgc
     2281 cgttcccgaa ttcgt
//
