LOCUS       CP093117                4072 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain 2016AM-0673 plasmid p2016AM-0673_1,
            complete sequence.
ACCESSION   CP093117
VERSION     CP093117.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN13512702
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4072)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4072)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (10-DEC-2019) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 4072)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2016AM-0673_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 143x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:19:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,545
            CDSs (total)                      :: 4,420
            Genes (coding)                    :: 4,310
            CDSs (with protein)               :: 4,310
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 44 of 110
            Pseudo Genes (incomplete)         :: 83 of 110
            Pseudo Genes (internal stop)      :: 22 of 110
            Pseudo Genes (multiple problems)  :: 35 of 110
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4072
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2016AM-0673"
                     /db_xref="taxon:28901"
                     /plasmid="p2016AM-0673_1"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(join(3967..4072,1..2042))
                     /locus_tag="GPA80_22695"
     CDS             complement(join(3967..4072,1..2042))
                     /locus_tag="GPA80_22695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UPY34849.1"
                     /translation="MAIYHLSMKIISRSSGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPHELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAIGPAGFSGKVRDWNDRTHAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQ
                     NRLINRLNLEIQISRTELRNGGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPKDSN
                     SAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWA
                     APEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQMAFEKQWQQWGESGLAALRAQL
                     LKREEELRRKEQEDTERSRAEQLRKNDNAVMDSGVLRAVVTGYGEAPMPGNGEMTCYLL
                     LHNRNGEYTLWGNELEKYRTRIFESVDLMRDRSGYICDRSEIGQRPPLQRVYSSATFEQ
                     LLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSPAARKVDFMQGRLPPTLMPVM
                     SSVDRETRQLQLLLVMGVDDSLGGVIRLNGTLYPAFAVPSADNRHLVISALTDKGLRYA
                     GYGVAVNHDADSHISPAPELMQFHLKTREVPLFAAVNTPEKQPDHLFRSLGFNRTWEEW
                     QREEDARTHTTERRHDRGWSQ"
                     /name="MobA/MobL family protein"
     gene            2221..2475
                     /locus_tag="GPA80_22700"
     CDS             2221..2475
                     /locus_tag="GPA80_22700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UPY34847.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVVVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPEQ"
                     /name="mobilization protein"
     gene            3009..3710
                     /locus_tag="GPA80_22705"
     CDS             3009..3710
                     /locus_tag="GPA80_22705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPY34848.1"
                     /translation="MSDLIAYKSNALIEASYKLTLQEQRFLLVCISRLKSGEDSPSPDE
                     QKTMTITAAEFHDAFPDMGRQHAEARLKEAIDRLWDRSVIIKNEEKREEFRWVQYRAQY
                     FKGEAKVDITFSDAIMPYLTQLKGQFTRVVVKNVSSLSSTYSIRIYELLQQFRSTGDRT
                     IAIDDFRTMLAVEDKYQQFKDLNKMIIKPAIAELNEKSDLVVTVETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     Typing          complement(1685..2043)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2044..2220
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.61e-88"
     Typing          3010..3710
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.858"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(4..2129)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.073"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 agatgatccg gctgtttttc tggtgtgttg acggcagcaa aaagcggtac ctcacgggtt
       61 ttcagatgaa actgcatcag ttctggtgca ggtgatatgt ggctgtctgc atcgtgattt
      121 acggcaacac cataccctgc ataccgtaac cccttatcgg tcagcgcact gatgaccaga
      181 tgcctgttat cggctgaggg aacggcaaac gcgggataca gcgtaccatt aagccggata
      241 acaccgccca gagagtcatc cacgcccatg accagcaaaa gctgaagctg gcgggtttcc
      301 cggtcgacag aactcatgac cggcatcagc gtcggtggca gacgtccctg cataaaatcc
      361 accttccttg ccgctggtga tggcatggct ggctggcggt cttctccaag acagaaagac
      421 tccggccatg tcttcggctg gcggagattg cgggtatgtt gcggccatgt ctggcaaacc
      481 tgcgtcagca gttgctcaaa ggttgcagag gaataaacac gttgcagtgg cggacgttgg
      541 ccgatttcgc ttcggtcaca gatataacca ctcctgtcac gcattaaatc aacactctca
      601 aagattctgg tgcggtattt ctccagctcg ttcccccaga gcgtatattc tccgttccgg
      661 ttgtgaagca gaaggtaaca ggtcatttcc ccgttaccag gcatgggagc ctcgccatac
      721 cccgtaacga ctgctctcag cacccctgaa tccataacgg cattgtcatt tttcctgagc
      781 tgctccgcgc gactacgttc agtatcttcc tgttccttcc ggcgcaattc ctcttcacgt
      841 ttaagcaact gggctctgag agctgcaagg ccggattccc cccactgctg ccactgtttt
      901 tcaaatgcca tctgactcgc gggaatgtcc tgtttctcca ccttccggta atgctgtcgt
      961 aatttttcca tttgctggct cagagactgg atttttccct gctcactacg gtattccggt
     1021 gccgcccatt gcatcagggg aatacgggaa aaaccggacg aaaacggcga tgattttttc
     1081 aggctggcag catggctcat cgcttccttt cgttcggtgt tcagctcttc ccagcgtctg
     1141 cgcgtcgcct gcatatctgc catcatcgac atggcattac tggtgagttt ccatgccgag
     1201 ttactgtcct tcggcaacgc ttcgataatg tcacgtagtg tgtacgaagt tgcgttgtca
     1261 ggaagcccga tattcagaag gtcagccaca cggcgggcag gctctgtcag ccctccgttc
     1321 ctgagttcgg tgcgggaaat ctgtatttcc aggttaagcc tgttaatcag acgattctgt
     1381 tcgccgcgtt ctgtttcgat accgcgtgtt tccatcgcac aggcagactt tccgaggtga
     1441 ataccaggcg ttttctcaag cccctgtcgc tcgtatgaac gatggtctat ctcttcctga
     1501 taaccggcgt tcgccagtgc cctgtttgca tggtcagccc atgatgcccg ccacgtctcg
     1561 gcatgtgtcc ggtcgttcca gtccctgacc tttccgctga acccagcagg tccgatagcc
     1621 ctcgtggtca gcatgatgtg cgcatgggga tttgttttat ccatgtgatg gaacgccaca
     1681 tcagcaatca tgccctgact gacaaagttt tctctgacaa aggcgagaac ggtttcccgt
     1741 gcggcatcct gcggcagttc gtgggggatg gcgagttcaa tttcccgcgc aagttgtgag
     1801 ttcttccggc gttcggcctt ctcaacggca ttccagagtt cggcacggtt cgtacaccag
     1861 gcaggggcgg tggcgggggt cagaatcaca gcctcagcca caccgctttt gcgggtgtag
     1921 tcgtgagtca gtccggtacg ctcatcaagc atcagtgaac cggaacgata ggcagcggaa
     1981 gctacggcgc tgtagccgct gcttctggag ataattttca tgctgagatg ataaatcgcc
     2041 atttctgccg taatgccttt ttgtagtttt ctttcagccc cgcagggcgc acacaatcga
     2101 aacggagtgg agattgtata agtgcgcact tcgtgatttg ccgtgcatta tgccagctca
     2161 gtttttaaac taccagtgac gcgctaaaat gcgatttttc atcgcgcacg gagttacatc
     2221 atgagcagaa cgctcgaaca gaagattgct gatgctgagg cgagattaca gcgcctgaag
     2281 gcgaagagcc ggagcctgga cacagcgcag aaggttgttg tgggtgctgc attgctggca
     2341 aaggtcagaa agccggaaga ggtgcagttg cgtgcctggt tactccagtt cctgaaggca
     2401 gaggtgacac gacaggctga tgtgacgcgc atactgccgc tgattaacga gctggaggcg
     2461 ctgccagaac agtgattgta tcgtccgctc gccgcagccc cagcgaccga gcgttagcga
     2521 gcgagtgggc gaggaagcgg aagtgaatca gtcgccaggt tgagcacata cgcacggttt
     2581 ttcggcaggt gatatgcgct gaacccgcat gaatactggg tttccacagg gttggagggg
     2641 gtgtattcga aacttgcaat tctgctttat tgcaacgcat tgtttttatt ggttttttgt
     2701 tttcagcacc ccaagttatc cacaggctcg ccgttaagtt tttaagatct tatttttaga
     2761 tctttttttt taaaaccttt ttaggtcttg taacaccatg attttaaaga tgttctggca
     2821 agataagtgg agcttttggg ggtgaaaggt ggagcttttg ggggtgaaag gtggagcttt
     2881 tgggggtgaa aggtggagct tttgggggtg taatccacag aaaaaggggg ttgcaaaaaa
     2941 aaaacttcca cccatatgat aagtggcgta cagtaaaaaa acgccaccaa tagcaacgag
     3001 caagcgaaat gtcagatctg atagcttaca aatcaaacgc ccttatcgag gcaagctaca
     3061 agctcacttt gcaggaacag cgcttcctgc tggtctgtat cagccgcctg aaatccggag
     3121 aagattcccc ttcgccggat gaacaaaaaa ccatgaccat cacggctgca gagtttcatg
     3181 atgcctttcc tgacatggga cggcagcacg ctgaagctag gctcaaggaa gcgatagatc
     3241 gcctctggga caggtcagta atcatcaaga acgaggaaaa acgagaagag ttccgctggg
     3301 tgcagtaccg ggcgcagtat ttcaaaggtg aggcgaaagt agatatcacc ttctccgatg
     3361 ccatcatgcc gtatctgaca cagctcaagg ggcagtttac gcgggtagtc gtgaagaacg
     3421 tctccagcct ttccagcacc tacagcatcc gcatttacga gctgctccag cagttccgca
     3481 gcaccggtga cagaacgata gctatcgatg atttccgaac catgcttgcc gttgaagata
     3541 aatatcaaca attcaaagac ttgaataaga tgataatcaa gccagccatc gccgaactga
     3601 acgaaaaaag cgatctggtt gtaactgttg agacgatcaa aaaggggcgc acggttgtag
     3661 ccctgcattt tcgcttcaag gaagacaaac agatcaagat gacgatctaa aatcgatttt
     3721 aaggcaccta aaacgctccc tgctgcgttt tttttgtgtt agtagtgcga aggtactatt
     3781 gaagtgaaaa attgcgtcaa aaacgctctg atgcagcgaa aaaagacccc caatttttgg
     3841 gggcggaaaa acaaaactat gcttgcgtta tgtgagtgtg cttcttgcat tcatccctgt
     3901 cgatgaacat cgaagaacat cgacgaacat aacacgatgt taaacaaaac aaaatattgt
     3961 tcacattcac tgtgaccaac cgcgatcatg tctcctctcg gtggtgtgtg ttcgtgcatc
     4021 ttcctcgcgc tgccattcct cccaggtacg gttaaaaccc agcgagcgga ac
//
