LOCUS       CP093115                4091 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain PNUSAS002131 plasmid pPNUSAS002131_3,
            complete sequence.
ACCESSION   CP093115
VERSION     CP093115.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN04961841
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4091)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4091)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 4091)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS002131_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 173x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:39:58
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,654
            CDSs (total)                      :: 4,529
            Genes (coding)                    :: 4,421
            CDSs (with protein)               :: 4,421
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 44 of 108
            Pseudo Genes (incomplete)         :: 80 of 108
            Pseudo Genes (internal stop)      :: 23 of 108
            Pseudo Genes (multiple problems)  :: 35 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4091
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS002131"
                     /isolation_source="stool"
                     /db_xref="taxon:28901"
                     /plasmid="pPNUSAS002131_3"
                     /geo_loc_name="USA"
                     /collection_date="2016-04"
                     /collected_by="CDC"
     gene            32..733
                     /locus_tag="A7U06_23260"
     CDS             32..733
                     /locus_tag="A7U06_23260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPY30542.1"
                     /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCIGRLKSGSDAESTEL
                     QKTMTVTAEEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKDDEKREEFRWIQYRAQY
                     AKGEGKAQITFSDAVMPYLTQLKGQFTRVVIKNISNLSRSYSIRIYELLQQFRSTGERI
                     IALDDFRSMLDIEHKYQTYKSLNQQLLRPCVDELNQKSDLAVTLETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     gene            complement(982..3129)
                     /locus_tag="A7U06_23265"
     CDS             complement(982..3129)
                     /locus_tag="A7U06_23265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UPY30543.1"
                     /translation="MAIYHLSMKILSRSKGYSAVASAAYRAGEKILDERTGVIHDYTRK
                     NGVASAVILTPANAPAWCANRAELWNAVEKAERRKNSQLAREFELAIPRELAQDAARET
                     VLNFVRENFVSRGMIADVAFHNLGGSNPHAHIMLSMRAITPDGFGEKVREWNDWTHAET
                     WRGSWADHANRALANAGYQEEIDHRSYERQGVEKTPGIHLGKSACAMEKWGIETERGEQ
                     NRLINRLNLEIQVSRDELRNSELTEPARRMADLLNIELPDNATSYILHDIIEALPTDSN
                     AAWKLTSKAMSMMADMQATRRRWEDLNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWV
                     APEYGREQEKIQSLSQRMEKLRQHHWKVEKQDIPASQKAFETQWQQWGASGLADLREQL
                     RKREEELRRKEQEETERRRAEQLRRNDNAVMDSGVLKAVVTGYGEAPMPGNGEMTCYLL
                     LHNRNGEYTLWGNELEKYRARIFESVDLMRDRSGYICERSEIGQRPPLQHVYSSATFEQ
                     LLTQVCQTWPQHTRDLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTLMPVM
                     SSVDRETRQLQLLLVMGVDDSMGGVVRLNGTLYPAFAVPTADNSQLVINALTDKGLRFA
                     GYGEAVNHDADSPARPAPELMQFHLKTWSEPLFAIVNTPEKQPDHLFRSLGFERTWDEW
                     QRDEYARTHATERRHDRGWSQ"
                     /name="MobA/MobL family protein"
     gene            3300..3590
                     /locus_tag="A7U06_23270"
     CDS             3300..3590
                     /locus_tag="A7U06_23270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001514113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UPY30541.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVIVGAALLAKVRKP
                     GETQLRAWLLHLLKTEVTRQADVSRIQPLIDELNALPKPVPKEVSENDQQA"
                     /name="mobilization protein"
     Typing          2775..3129
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3146..3296
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.81"
                     /coverage="85.0"
                     /evalue="3.53e-55"
     Typing          33..732
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.301"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(986..3171)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.726"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttactcatta ccttaggttg agggatttac aatgtcggat ctgattgcct acaaatccaa
       61 tgcactggtt gaggccagct ataaattgac tcttcaggaa cagcgattct tgttactttg
      121 cattggtcga ttgaagtcgg gttctgatgc agaatccact gaattgcaaa agaccatgac
      181 tgttaccgcc gaagagtatt tcgactcatt ccctgatatg gggcggaaaa atgccgaggt
      241 tcagctacag gaagcaattg atcgtttgtg ggacaggtcg atcatcctta aggacgatga
      301 gaagcgcgag gagttccgct ggatccagta tcgggcacag tacgctaaag gtgagggcaa
      361 agcccaaatc actttttcag atgcggtcat gccttatctg acacagttga aggggcaatt
      421 tactagagtt gtaattaaga acatctccaa tttatcaaga agttacagca taagaatata
      481 cgaacttctc cagcaattcc gcagcacagg ggaacgtatt atcgccctcg atgattttcg
      541 ctcaatgctt gatatagagc ataaatatca aacatataag tctctgaacc agcaattatt
      601 aagaccttgc gttgacgaac tgaatcaaaa aagcgacttg gctgtaacgc ttgagacgat
      661 caagaagggg cgcacggttg tagccctgca ttttcgcttc aaggaagaca aacagatcaa
      721 gatgacgatc tagaatcgat tttaaggcct ctaaaacgct ctctgacgcg ttttttttgt
      781 gtttggcatg cgaaggtact ggtgaagtaa aaaattgcgt cataaacgct ctggcacagt
      841 gaaaaaagaa cccccaattt ttcgggggcg ggaaaactat aaagttgatt tgtgttatgt
      901 gtgtgcttct tgcattcatc cctgtcgatg aacatcgacg aacataacac gatgttaaac
      961 aaaacaaaat attggtcaca ttcactgtga ccaaccgcga tcatgtctcc tctcggtggc
     1021 gtgtgttcgg gcatattcat cacgttgcca ttcatcccag gtgcgctcaa agcccagcga
     1081 gcggaacaga tgatccggct gtttttctgg cgtgttgacg atagcaaaaa gcggttcgct
     1141 ccaggttttc agatgaaact gcataagttc cggcgcagga cgtgccggac tgtcagcatc
     1201 gtggtttacc gcttcaccat agcctgcaaa gcgtaaacct ttgtcggtca gtgcattgat
     1261 taccagctgg ctgttgtcgg ctgtggggac ggcaaacgcg ggatacagcg taccattaag
     1321 ccggacaaca ccgcccatag agtcatccac acccatgacc agcaaaagct gaagctggcg
     1381 ggtttcacgg tcgacagaac tcattaccgg catcagagtc ggtggcagac gtccctgcgt
     1441 aaaatccacc ttccttgccg ccagtgatgg catggctggc tggcggtctt ctccaagaca
     1501 gaaagactcc ggccatgtct tcggctggcg gagatcgcgg gtatgttgcg gccatgtctg
     1561 gcaaacctgc gtcagcagtt gctcaaaggt cgcagaggaa taaacatgtt gcagtggtgg
     1621 acgttgaccg atttcgcttc gctcacagat ataaccactc ctgtcacgca ttaaatcaac
     1681 actctcaaaa attctggcgc ggtatttctc cagttcgttc ccccagagcg tatattctcc
     1741 gttccggttg tgaagcagaa ggtaacaggt catttccccg ttacctggca tgggggcctc
     1801 gccatacccc gtaacgactg ctttcagtac ccctgaatcc ataacggcat tgtcatttct
     1861 cctgagctgc tccgcccgac gacgttctgt ttcctcctgc tccttccggc gcaattcctc
     1921 ttcacgttta cgcaactgtt ctcggagatc tgcaaggcca gatgcacccc actgctgcca
     1981 ctgtgtttca aatgcttttt gactcgcggg aatgtcctgt ttctcaacct tccagtgatg
     2041 ctgccgcaat ttttccatgc gctggctcaa cgactggatt ttttcctgtt cgcggccgta
     2101 ttccggtgca acccattgca tcaggggaat acgggaaaaa ccggacgaaa acggcgatga
     2161 ttttttcagg ctggcagcat ggctcatcgc ttcctttcgt tcggtgttca gatcttccca
     2221 gcgtctgcgc gtcgcctgca tatctgccat catcgacatg gctttactgg tgagtttcca
     2281 tgctgcgtta ctgtccgtcg gcaacgcttc gatgatgtca tgcagtatgt acgaagttgc
     2341 gttgtcagga agctcaatat tcagaaggtc agccatacgg cgtgcgggct ctgtcagctc
     2401 actgttcctg agttcgtcgc gggaaacctg tatttccagg ttaagcctgt taatcaggcg
     2461 attctgttcg ccgcgttctg tttcgatgcc ccacttttcc atcgcacagg ccgactttcc
     2521 gaggtgaatg ccaggcgttt tctcaacccc ctgtcgctcg tatgaacgat ggtctatctc
     2581 ttcctgataa ccggcgttcg ccagcgccct gttcgcatgg tctgcccatg atccccgcca
     2641 tgtttcggcg tgagtccagt cattccactc acggactttc tccccgaagc cgtcaggcgt
     2701 gattgccctc atggatagca tgatgtgcgc gtgtgggttt gacccgccca gattgtgaaa
     2761 ggccacgtcg gcgatcatgc cgcgactgac aaagttttcc cttacgaagt tgagaactgt
     2821 ttcccgtgcg gcatcctgcg ccagttcacg ggggatggcg agttcgaact cccgcgcaag
     2881 ttgtgagttt ttccgccgct cggctttttc aacagcattc cagagttcgg cgcggttcgc
     2941 acaccatgct ggggcgtttg ctggcgtcag aatcactgcg ctggctacac cgtttttgcg
     3001 ggtgtagtcg tgaatcactc cggtgcgctc atccagtatt ttttctccgg cacgataggc
     3061 agcagaagca acggcgctgt agcccttgct tctggaaaga atcttcatgc tgagatgata
     3121 aattgccatc gtgtcgttgt tgccgttttc ttttagcccc gcagggcgca cacaaactcg
     3181 acgaaggaga gtttgtataa gtgcgcactt cgtgatttgc tgtgcattat gccagttcag
     3241 tttttaaact accagtgacg cgctaaaatg cgatttttca ccgcgcacgg agttacggaa
     3301 tgagtagaac actcgaacag aagattgccg atgctgaggc cagattgcag cgtctgaagg
     3361 cgaagagcag gagcctggac acagcgcaga aggtcattgt gggagcggca ttgctggcaa
     3421 aggtcaggaa gcctggggaa acacaactac gagcctggtt gcttcatctc ctgaagacag
     3481 aggtaacacg gcaggctgat gtgagcagga tacagccgtt gattgacgaa ctgaacgcgt
     3541 taccaaaacc agtccccaaa gaagtgtcag aaaacgacca acaggcgtga atgcaccgtc
     3601 cgctcgccgc agccccagcg accgagcgtt agcgagcgag tgggcgagga agcggaagtg
     3661 aatccgtcgc cagattgagc acatacgcac ggtttttcga caggtgatat gcgctgaacc
     3721 cgcatgaata ctggatttcc acagggttga gcggggtttt gttaaagctt gcgaacctgc
     3781 ttttttgtaa cctgttgttt ttcatgattt tttgttttga acaccccaag ttttccacag
     3841 gctcgccgtt aagtttttag atcttgtttt taagatcttg tttttaatac ttgttttagg
     3901 gtcgaatttt cttattaaat tcaagagttt agaagactat aggtaatata atttaaggta
     3961 aaggcaatat gatttaaggt ggataggcaa tatgatttaa ggtaaaggca atatgattta
     4021 aggtaatatt cacaggaaaa gggatattaa aattaaatca tattgccttt acctaaagga
     4081 atgtttatat t
//
