LOCUS       CP093111                4633 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Hadar strain 2017AM-0493
            plasmid p2017AM-0493_2, complete sequence.
ACCESSION   CP093111
VERSION     CP093111.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN17129770
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Hadar
  ORGANISM  Salmonella enterica subsp. enterica serovar Hadar
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4633)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4633)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2017AM-0493_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 90x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:19:08
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,727
            CDSs (total)                      :: 4,602
            Genes (coding)                    :: 4,487
            CDSs (with protein)               :: 4,487
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 46 of 115
            Pseudo Genes (incomplete)         :: 85 of 115
            Pseudo Genes (internal stop)      :: 22 of 115
            Pseudo Genes (multiple problems)  :: 34 of 115
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4633
                     /organism="Salmonella enterica subsp. enterica serovar
                     Hadar"
                     /mol_type="genomic DNA"
                     /strain="2017AM-0493"
                     /serovar="Hadar"
                     /sub_species="enterica"
                     /db_xref="taxon:149385"
                     /plasmid="p2017AM-0493_2"
                     /collection_date="2017"
     gene            complement(549..1388)
                     /locus_tag="JF244_23610"
     CDS             complement(549..1388)
                     /locus_tag="JF244_23610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY21314.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(2399..2590)
                     /locus_tag="JF244_23615"
     CDS             complement(2399..2590)
                     /locus_tag="JF244_23615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UPY21310.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2653..2976
                     /locus_tag="JF244_23620"
     CDS             2653..2976
                     /locus_tag="JF244_23620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UPY21311.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3185..3625
                     /locus_tag="JF244_23625"
                     /pseudo=""
     CDS             3185..3625
                     /locus_tag="JF244_23625"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            3654..4214
                     /locus_tag="JF244_23630"
     CDS             3654..4214
                     /locus_tag="JF244_23630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UPY21312.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            4221..4454
                     /locus_tag="JF244_23635"
     CDS             4221..4454
                     /locus_tag="JF244_23635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UPY21313.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          2227..2311
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          complement(1658..2216)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.761"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2967..4552
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.811"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cattaacaat atccaaacct ccccattttg ccccgttcga cggctggaac gtgcgaaact
       61 gatcgtcatt cagtttcgcg cataactatg catgaggtta aaatttacca ggcgcgatcg
      121 cggcagtttt tcgggtggtt tgttgctgtt tttacctgtc tgctgccgtg atcgcgctga
      181 acgcgtttaa gcggtacgcg caatgcgacg ttatggtaaa tacggagtat tttaattgcg
      241 ggaattaaaa caacaaaggc ccgctgtact ctatacagcg ggcctttgtt gtatatctct
      301 gtcgtttgtc cccgggggga agcattactg ctaacaagtc ccgtgagaaa actgcgcaat
      361 cgtattgcgc accatgaacc tattctcaac cgcaatctgg aggatgattt tgctacgata
      421 aagagaatta tcgcgtatcg gtgtcagcat tcattggagt ggatgctgaa aaaccaggtg
      481 ttactccctc tacttacact taaacctctc taaaaatata agtaagtact atcgagggct
      541 atcatgaact atggtgccct ctgagcatag ctacccatta cttcttctat gtcattgaat
      601 aattcatttc ttaactctaa gtattctagt aactccattt ctaatgactc tgtcgtgaac
      661 ttaaatctag aaggatcttt gattgagttt actagtcttg ataacgctct atatgttttg
      721 agtgaaggtt gcattataga tggaaagtat ttgaaaacct cttcatctct gttgaaatta
      781 actaaaaact tgtagtcatc atttataaat ctcaagcata cagcgtcaag cttatcgcct
      841 tttcttatta ttatttcttt ataggaaaga tatttttcag aagataagtc ccacatcaag
      901 cgaaaatctc tctttgcgaa cgagttcgcg tcatcattga aaagagatga tgtgatggct
      961 ttggatagac cttctgtgtt tatctctttg ttggatgggt agtaaatttt attaattgct
     1021 ttcattctct caaatgatga atataggtca ttatgccacc ttgttgaaat caccccttta
     1081 gttatattct ccttgctaaa attaagccct gtatcaaaaa taaatgcagc catcagtgaa
     1141 tatgatatgt tttttattaa ctcagactta aatggttccg ctatggagta gtacagtgat
     1201 aaaataacta aaaataaaag gtattgtctt acctttcccg atgagtatat gtaaaggcga
     1261 tatttattta ttgatagttt tattttgtat ggaatgatct catttctgtc atatcctctt
     1321 cgtggtggag caaaacaaaa gaaacatgca gctattaata aaacaaaaaa gatgaacagt
     1381 gtaagcaagt tcggctcctg tgtatgctca ctatgcatga ttgtcttgag atctaacgat
     1441 cctgaaggta gtcttgtccg taaacgaaaa aaccgcccag caaggcggct tttcgaaggt
     1501 tctcagagca gcaactcttt gaaccaaggt aactggcttg gaggagcaca gccaccaaat
     1561 ctgtcctttc agtttagcct taaccggcgc ataacttcaa gactaactcc tctaaacggt
     1621 taccaatggc tgctgccagt ggcgttttta cgtgtctttc cgggttggac tcaagacgat
     1681 agttaccgga taaggcgcag cggtcgggct gaacgggggg ttcgtgcaca cagcccagct
     1741 tggagcgaac gacctacacc gggccgagat accaacagcg tgagctatga gaaagcgcca
     1801 cgcttcccga agggagaaag gcggacaggt atccggtaag cggcagggtc ggaacaggag
     1861 agcgcacgag ggagcttcca gggggaaacg cctggtatct ttatagtcct gtcgggtttc
     1921 gccacctctg acttgagcgt ctgtttttgt gatgctcgtc aggggggcgg agcctatgga
     1981 aaaacgccag cggcgcggcc ttcttcctgt tcttggcctt ttgctcacat gtttcttttg
     2041 gcgttatccc ctgattctgt ggataaccgc atcaccgtct ttgagtgagc tgataccgct
     2101 cgccgcagcc gaacgaccga gcgtagcgag tcagtgagcg aggaagcgga agagcgcctg
     2161 atgcggcatt ttctccttac gcatctgtgc ggtatttcac accgcatatg gtgcactttt
     2221 cttataatcc gcactgatgc cacatagtta agccagtata cactccgcta tcgctacgtg
     2281 actgggtcag ggctgcgccc cgacacccgc taaaacccgc tgacgcgccc tgacgggctt
     2341 gtctgctccc ggcatccgct cacaggcaag ctgtgaacgt ctccgggagc tgcatgtttc
     2401 agttgctttc accgtcatcg ccgaagcgtg cgaggcaact acggtagagt tcgtcggcgt
     2461 ggtcgtgaag tgattcgcag atgtctgcct gttcgtccgc gtccagctcg ttgagttttt
     2521 ccagcagggt cagcgtctgg cttctgataa agcgggccat gttaagggct gttttttcct
     2581 gtttggtcat ggtcttaagg ctccttaata ggggattttt tagggggaat gataccgatg
     2641 aaacgcgaga agatgctcac gatacgggtt agcgatgagg agcacgcccg gttactggaa
     2701 cgctgcgagg gtaaacgact ggcagaatgg atgcggcggg tctgtctggg ggagccggtt
     2761 gcgcgcacag gaaaactgcc gacactatcg ccgccattgc tgcggcatct ggctgccatc
     2821 gggaacaatc tgaaccagac agcccggaag gtgaacagcg gccactggtc ttcgattgac
     2881 cgggttcatg tggtggccgc actgatggcc atcgagggtg aattgcgcca gttgcggcag
     2941 gctgtcaggg aacagggggg acgggatgat agttaaattt catgccaggg ggaaaggcgg
     3001 tggaagtggc ccggtcgatt acctgctggg gcgggagcgt aaccgcgaag gcgcaacggt
     3061 gctccggggt aacccggaag aaatccggga actcattgat gccacgccat tttcgaagaa
     3121 atacacgtca ggcgttctgt cgttcgcgga gaaggagtta ccgccgggtg aacgcgaaag
     3181 agtgatgacg agctttgagc gtgttcttat gcccggtctc gaaaaagacc agtacagcat
     3241 tctctgggtg gaacaccagg ataaggggcg gctcgaactg aattttgtca ttccgaacat
     3301 ggaactacag agcggtaagc gcctccagcc gtactacgac cgtgcggaca ggccgaggat
     3361 aaatgcctgg cagacgctgg ttaatcatca ttacgggctg cgtgacccga acgcaccgga
     3421 gaacagacgg acgcttgtca caccgaataa tctgccaaaa gcgaaacagg aggccgcaga
     3481 agcgattaca cggggtcttg aggcgcttta ccgtgccgga gcaataaaaa cgcgtcagga
     3541 tgtcactgag gcgctcacag cggcaggttt tgaggtggtg aggacaacca gaagcagtat
     3601 cagtattgcc gacccggagg gggggcggaa tctcaggcta aagggggcgc tgtatgagca
     3661 atcttttaca aatgggaaca gacttcgaga agaaactgaa agagcgagcc gcttctaccg
     3721 agaacatgct gaacagcgag ttcaggaagc tagaagagtc tgtagacaag gcactgagct
     3781 taaacaggca gaaaatcaga gacgctatca gcgaacatac aacatccgtg aaacagcaac
     3841 tggatacgct gagcaccacc gtgagcacgc agctcagcac cacagaggcc gaactgtccc
     3901 ggcagcagaa aaacctgctc tggcaggtga tcaaagggcg ggtactgttt ccggcgctga
     3961 ccgcgctcag cgtcacgggc ggcattttcc tggggtgctg ggggctgatt cagtggcagg
     4021 aaagcaggat tgcgaaaaat atcttgacca tcagagagca ggaaaacacg ctggcgaaac
     4081 tcgaggcaaa aacctggggg gtgacgttcg tcaatggcga gaacgggaaa tttctggtgc
     4141 tgccggacgg ggtgaaaggg gaaaacacct ggacggtggg cgacaagaac gccgtgaggc
     4201 tggtcaggga gtaaacgagt atgacggaac tggaagggca tttgctgaac gccttagagc
     4261 atttgcaaca ggactatatg cggcggctga acgagtggga gagcgccttc gcagaattgc
     4321 agaagatgca cgcggttacg caacagaaca acgcgatact gaacgagcgt gtcgtgaact
     4381 tgagtcagca ggtgcagcta ttagccggac aagtcgaccg cttgagtcgg ttatttatca
     4441 cgaacaacag ataagggatg aacaggagcg tcaggcgcag gagcttgccc ggcgctggca
     4501 tgaagagcag gaacccgaag cgcggatctg gcgtggcccg tcaatgggga tgtgaccggg
     4561 gtgccccctg aaatcgagcc agtttgtggc acgccctacc cggatggcgc caatgttaat
     4621 gtacgtacat tag
//
