LOCUS       CP093110                5631 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Hadar strain 2017AM-0493
            plasmid p2017AM-0493_1, complete sequence.
ACCESSION   CP093110
VERSION     CP093110.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN17129770
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Hadar
  ORGANISM  Salmonella enterica subsp. enterica serovar Hadar
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5631)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5631)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2017AM-0493_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 90x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:19:08
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,727
            CDSs (total)                      :: 4,602
            Genes (coding)                    :: 4,487
            CDSs (with protein)               :: 4,487
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 46 of 115
            Pseudo Genes (incomplete)         :: 85 of 115
            Pseudo Genes (internal stop)      :: 22 of 115
            Pseudo Genes (multiple problems)  :: 34 of 115
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5631
                     /organism="Salmonella enterica subsp. enterica serovar
                     Hadar"
                     /mol_type="genomic DNA"
                     /strain="2017AM-0493"
                     /serovar="Hadar"
                     /sub_species="enterica"
                     /db_xref="taxon:149385"
                     /plasmid="p2017AM-0493_1"
                     /collection_date="2017"
     gene            complement(132..365)
                     /locus_tag="JF244_23570"
     CDS             complement(132..365)
                     /locus_tag="JF244_23570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UPY21305.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(372..902)
                     /locus_tag="JF244_23575"
     CDS             complement(372..902)
                     /locus_tag="JF244_23575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UPY21306.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDAHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="MbeB family mobilization protein"
     gene            complement(940..1371)
                     /locus_tag="JF244_23580"
                     /pseudo=""
     CDS             complement(940..1371)
                     /locus_tag="JF244_23580"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1580..1903)
                     /locus_tag="JF244_23585"
     CDS             complement(1580..1903)
                     /locus_tag="JF244_23585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UPY21309.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1968..2159
                     /locus_tag="JF244_23590"
     CDS             1968..2159
                     /locus_tag="JF244_23590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UPY21307.1"
                     /translation="MTKQEKTALNMARFIRGQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2182..2502)
                     /locus_tag="JF244_23595"
     CDS             complement(2182..2502)
                     /locus_tag="JF244_23595"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY21308.1"
                     /translation="MDNRVSVFEKGESARRSRTTERSESVSEEAEERLNWHFLLTHLCG
                     ISHRTWRTFHTIRTDAEWLSQYTLRYRYVTGSGLRPDTPKVNGLTRPGGLVCSRHPLTD
                     KL"
                     /name="hypothetical protein"
     gene            complement(3362..4228)
                     /locus_tag="JF244_23600"
     CDS             complement(3362..4228)
                     /locus_tag="JF244_23600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001335763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="UPY21303.1"
                     /translation="MIKGMLFAFLAAFSWGAAIVMSKKGVEELDAGGVFFWQICSAVIL
                     SWIVLFIKRKKLPLNSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLESVFI
                     LVLSVLICSVKINSPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVVAGVLSAAF
                     YVVISSRLIKSFEPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGILQYF
                     LAFCFYLNSLRWLPVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVGFIVTVLSVYFL
                     NRKYSEE"
                     /name="DMT family transporter"
     gene            complement(4230..5282)
                     /locus_tag="JF244_23605"
     CDS             complement(4230..5282)
                     /locus_tag="JF244_23605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY21304.1"
                     /translation="MNLQQRINKLPQLSSSFSFGKDIDNIHSFIFNETSKDKIEDLLRK
                     WVSGNQPCVFGKLASKKIKGLDFHLSIVNSPQLYNDDGHLFDFLRNERVRFKERARRGE
                     VSAHLIYFIHPQLAFARPSEELVDIQKYICSLHMPECYPIKEDVIYTESVPFQDKDGLK
                     IYKAGVNVFYSSAHRTRNHDRRIPGGILISVNAPGHFMRLAIEKGFYKDQEQALADIRN
                     MTIQSVGKGGYSHPEGISTTWHSESNLDRFGCPVHTGNSSYYSGFYHTDVLIPGELTKD
                     ERLLHEIENSDPMIFNWNVLFYVSLEEFPIDDPYYGEFIGIPVDDASMFFNSFQPRKFE
                     NKPLYEKEDD"
                     /name="hypothetical protein"
     Typing          complement(2254..2335)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          complement(2792..2979)
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          complement(29..1590)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctgaacacgt catttttcat ggtttcacca tcccagcgaa gggccatcca gtgtccgctc
       61 ctggatttcc ggctgacgct cccgctccag agataactca tgttcgcgtt cctgcatcag
      121 ccgttcatcc cttatctcct gttctcgctg tataactggc tcaagcgttc tgtccgctcg
      181 ctcaagtgct gcacctgctg actcaactgc atgactcgcc cgttcagcat cgcgttgtcc
      241 cgttgcgtaa gcgaaaacat tttctgcaat tccacgaagg cgttctccca ttcgttcagc
      301 cgctgcatat agtcctgttg cagttgctct aatgcgttca gcaaatgtct ttccagctcc
      361 gtcatgctct gtcactcctg caccagtctc actgcgttca gtttgccgtt gtccttcgtc
      421 cagttcgttt cggctttcat ccccttcggc aacaccagaa aacgtccgtt gctgtcctcg
      481 tgataacgca cgccccatgt cttcgcgttc agcttctcca gactctcttt ctgctcgcgg
      541 agaatattca tattcgcgtt tatcttcatg ccctggtacc acagcagact cccggtcgtg
      601 gcaaacatca gtactgagac gataatcagc cacagccagc gtttcacgct cattttcagt
      661 acggttttcc agtgcgcgtc catcgtatcg acggtcgttt tctgatacct ctccagcagt
      721 tctttcaggg ctgttgtatg gtcgttgata gcgttcctga ttaaagattc gtttgaggtc
      781 agttccctgt ttacagattc ttcgagcttc ctgaactcgt cgttcagcat tttctctgta
      841 gattcggctc tctctttcag ctttttctcg aactccgcgc ccgtctgtaa aagattgctc
      901 ataaaacgct cctttcagtc tgatattcct cccgccgttc gggtctgcaa tgctgatact
      961 gcttcgcgtc accctgacca cttcaagccc cgcctctgtg agcgcctgaa tcacatcctg
     1021 acggcctttt atctctccgg catggtaaag cgcgtctatc ccgcgtgtga cgccctcagc
     1081 aagcgcctgt ttcgtttccg gcaggttatc aggaagggtc agcgtccggc ggttctccgg
     1141 ggcgttgggg tcatgcagac cgtaatggtg attcaccagc gtctgccagg catcaattct
     1201 cggcctgtct gcccggtcgt agtacggctg gaggcgtttt ccggtctgta gctccatgtt
     1261 cggaatgaca aaattcagct caagccgtcc cttgtcctgg tgctccaccc acaggatgct
     1321 gtactgattt ttctcgagac cgggcatcag tacacgctca aagctcgcca tcactttttc
     1381 acgccctcca ggcggcagct ccttctccgc gaacgacaga acacctgacg tgtatttctt
     1441 cgcaaatggc gtggcatcga tgagttcccg gacctcttcc ggattcccct gaagcaccgt
     1501 tgccccttcc cggttacgct cccttcccag caggtaatca accggaccac tgccaccacc
     1561 ttttcccctg gcatgaaact taactatcat cccgcgcccc ctgttccctg accgccagac
     1621 gcagccggcg cagctcatcc ccgatggcca tcagtgcggc caccacctga acccggtcac
     1681 cggaagacca ctgcccgctg ttcaccttcc tcgctgtctg gttaaggtta ttcccgatgg
     1741 cggccagctg acgcagtaac ggcggtgcca gtgtcggcag cttcccggaa cgggcaaccg
     1801 gctcacccag gcagacccgc cgcatccata ccgccagttg tttaccctca cagcgttcca
     1861 gtaaccgggc atgttcatca tcagtaaccc gtatcgtgag catcctctcg cgtttcatcg
     1921 gtatcattac ccccatgaac agaacccccc cttacacgga ggcatcagtg accaaacagg
     1981 aaaaaaccgc ccttaacatg gcccgcttca tcagaggcca gacattaacg ctgctggaga
     2041 agctcaacga actggacgcg gatgaacagg cagacatctg tgaatcgctt cacgaccacg
     2101 ccgatgagct ttaccgcagt tgcctcgcac gcttcgggga tgacggtgaa aaccgctgac
     2161 acatgcagct cccggagacg gtcacagctt gtctgtgagc ggatgccggg agcagacaag
     2221 cccgccaggg cgcgtcaggc cgttgacctt tggggtgtcg gggcgaagcc ctgacccagt
     2281 cacgtagcga tagcggagtg tatactggct taaccattcg gcatcagtgc ggattgtatg
     2341 aaaagtgcgc catgtccggt gtgaaatgcc gcacagatgc gtaaggagaa aatgccagtt
     2401 caggcgctct tccgcttcct cgctcactga ctcgctacgc tcggtcgttc ggctgcggcg
     2461 agcggactct cctttctcaa aaacgctaac cctgttatcc acagaacccg gggataaacc
     2521 aggaaagaac atgtgcgcaa aaaacgaaac cccgggaaag gccgcgccgg aggcgctttt
     2581 tccataggct ccgcccccct gacggacttc acaaaacaga cactttttcg gtgcatctgt
     2641 gggagccttg cggctcaacc atgaaatccg ccagcggtgg cgaaacccga cgtggcttaa
     2701 agatcatcac cgtttccggt gaatcgctcc ctcctgcgcc cccacgttcc cgccatatcg
     2761 attaccggat accttttccg cctttctccc ttacgggaca cgtggcgctt tctcatagct
     2821 cacgtcttct ggtatctcgg ggcgacttag gcagttcgct ccgggctggg ctgtatgcag
     2881 gaaccccccg ttcagcccga ctgctgcgcc ttctccggta actgttctct tgggtccaac
     2941 ccggaaaaga caccacaaag cgccactggc agcagccatt ggtaaaagtc atgtgcgaga
     3001 tatttagaga gtacttgaag tggctgccgg agtgcggcta cactagaaga acaattttgg
     3061 tgactcgtct cgcataagac agttacctgg ttaagcagtc tgcaagctga cttaaccttc
     3121 gatcaaaccg ccctgcaagg cggttttttc gtttacaggc agcagattac gcgcagaaaa
     3181 aaaggatctc aagaggatcc tttgatcttt ttgttacaaa cgtctctatt tgactcccct
     3241 gagagcgttt tagcgcgcct ctgaccccct tggttacatt ccgacaccag aaacgctccc
     3301 gttttttacg tgcatttggc acggtatcga tggaggccgg ggggcaatcc tgaacagaat
     3361 gttactcctc tgagtatttt ctgttaagaa aatatacact tagcacagtt acaataaatc
     3421 ctaccccctg taagaatgtg aattgttcat ccaaaaacaa ccatgacaaa aataatgcaa
     3481 ctagcggaat aaagtacaac attatccctg ccaaatgaac tgggagccaa cgcaaggagt
     3541 tcaagtaaaa acaaaaagct aaaaaatatt gtaatattcc agatgaaaaa acaataatca
     3601 cggattccaa cggaagataa attgatgatt tagatataaa aataaagagc gatgacagta
     3661 taagggagaa tgtcaactgt ccgctcaata atgtgatagg ctcaaacgat ttaataaggc
     3721 gagacgatat aacaacataa aatgctgccg ataacacacc ggcaacaaca agacaatatc
     3781 caacaatatt attcgatcca ttactgatgt ctggcaaggc taccaaaata ctgccaacaa
     3841 ttgcacctat aaggaacaat ataaaatatt gcggggaatt aattttaact gagcaaataa
     3901 gaacagacaa caccaatata aacactgatt caagtgaaaa aataattgat gcgcttcctg
     3961 ctgaaataaa ataaagtccg tagagtgtaa aagtatacgc taagaatggt tcaaaaacgc
     4021 ctgtcgcata agcaagtatc gcttttgagt ttaatgggag tttttttctt tttataaaaa
     4081 gaactatcca agatagtatt actgcactac aaatctgcca gaaaaacacc cctccggcat
     4141 ctagttcttc aactcctttt ttgctcatta cgatagctgc cccccatgag aacgctgcta
     4201 aaaaagcaaa aagcattcct ttaatcatat taatcatcct ctttctcata aaggggtttg
     4261 ttttcaaatt tccttggttg aaaggagtta aaaaacatag atgcatcatc tacaggaata
     4321 ccaataaact ctccataata aggatcatct ataggaaact cttctaatga aacataaaac
     4381 aatacattcc agttgaagat cattggatca ctattttcta tttcatggag caatctttca
     4441 tccttagtta attctcctgg aattaataca tcagtatgat aaaaaccgct gtaataagaa
     4501 ctattaccgg tgtgcactgg gcatccaaaa cgatccaaat tagattctga atgccatgtt
     4561 gtagaaatcc cttccggatg tgaataccca cccttaccaa cagactgaat agtcatgtta
     4621 cgaatatccg ctaacgcttg ttcttgatct ttatagaaac ctttttctat cgccagcctc
     4681 ataaaatgcc ccggggcatt tacagaaata agtattcccc ctggtattct tctatcatga
     4741 tttcttgttc tatgagcaga agagtaaaaa acattaacac cagccttata tatttttagc
     4801 ccatctttat cctgaaatgg tacgctttca gtataaataa catcctcttt tattggatag
     4861 cactctggca tatgcagcga acaaatatat ttttgtatgt ccactaactc ttctgatgga
     4921 cgagcaaagg caagttgtgg atgaataaaa taaatgagat gcgcactgac ctctcctctt
     4981 cttgcgcgtt ctttaaaacg aactctttca ttacgcaaaa aatcaaacaa atgaccatca
     5041 tcattatata gttgggggct atttacaata gataaatgga aatcaagccc tttaattttc
     5101 ttgcttgcca atttaccaaa tacacagggc tgattgcctg acacccattt tcttagtaaa
     5161 tcttcaattt tatctttaga agtttcgtta aagataaatg aatgaatatt atcaatatct
     5221 tttccaaatg aaaaactgga tgataattgt ggtagtttat ttatacgttg ttgaagattc
     5281 atgaaagctc ccacaagaca cctcatatat ttttttatat actgaaacta cattatattt
     5341 attaccggcg taaaacgaaa taatttatta tcgttaccga tattttaaaa aaatcattat
     5401 ttgcacagtg ttcgagttgt tagtatcact ccttcctgaa aatccgctcc atttaccata
     5461 acgtcgcatt gtacgcaccg ccaaaacgcg ttcggtgcga tcacggcagc agacaggtaa
     5521 aaatggcaac aaaccacccg aaaaactgcc gcgatcgcac ctgataaatt ttaaccgcat
     5581 gaatacctat gcaaccagat gctacaggcc acattagccc gccttaatcc a
//
