LOCUS       CP093108                2096 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain PNUSAS021403 plasmid pPNUSAS021403_5,
            complete sequence.
ACCESSION   CP093108
VERSION     CP093108.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN07521433
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 2096)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS021403_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 80x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:41:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,696
            CDSs (total)                      :: 4,571
            Genes (coding)                    :: 4,460
            CDSs (with protein)               :: 4,460
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 46 of 111
            Pseudo Genes (incomplete)         :: 81 of 111
            Pseudo Genes (internal stop)      :: 23 of 111
            Pseudo Genes (multiple problems)  :: 35 of 111
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS021403"
                     /db_xref="taxon:28901"
                     /plasmid="pPNUSAS021403_5"
                     /geo_loc_name="USA"
                     /collection_date="2017-07-31"
     gene            complement(join(1869..2096,1..762))
                     /locus_tag="CKA18_23480"
     CDS             complement(join(1869..2096,1..762))
                     /locus_tag="CKA18_23480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UPY21301.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          complement(1786..1867)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          1952..2096
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.63"
                     /coverage="100.0"
                     /evalue="8.219999999999999e-67"
ORIGIN
        1 aggatcggcc accatgtcag ccggcttcgt ggaatatttc agggtttcgg ccaccgcacc
       61 gcgcaccagt tcggcggtcg cgcaggccag cgattcgccg cccttcggct tacgaggttt
      121 cactgcccgg acatcaacat tcgggtcata atcgacccgc agacactccc gccagagttc
      181 aacccagcgt tcatgcctga cgtaactttt cccatttagc atgccaggcg gcaccatcat
      241 cagggtgtgg aagtgcgggt gtgcgctgcc gtcgctcccg cgggtgactt ccgtggtacg
      301 tatccagccc tgcacaggcc ggaactcctt gcgaaccttc atgcgctgaa aagctgcatt
      361 catccggttc agcatctcgc ccagctcccc gatcgcacag ttgcgcacgg tcagagtcag
      421 gaacatccag cgggcatcgg gataatccgc cacgatacgc ggcagggact ggtagaaacg
      481 ggcttgccac atcagggagc gcctccactg gcagacagga caatgccgga cacggcagaa
      541 atgcgcctca cgcagcctca gacgcgtttc tccggtttcc ttgagggtag accacccgaa
      601 acgcagtaaa ccaccacaga gggccatacg cgccccgtag cgctcatatt cggctgcaag
      661 caggtaaatc cctcccacgt catcagaaac gcttctgtga gcgtcccagg gcgcatctga
      721 gggggaatag tccgtgaggt tctggagatc agggtttttc atgcgcacca cccgatagtg
      781 ggcgatggct catctgacgt gttatcattg ccatatcacc tgttgtgtta gtcgtatcac
      841 caattcgaat tcctacaggt ggtcacaccc ccgaacgatt gccctcgttg cgggggtcgc
      901 ttttaatgcg accactcccg acagaataac tccaaaacca ttttccgaca aatccccctt
      961 caggccttgc ggcacaaggg ctggaggcga atttgaatcc tagagttatc ccttaagtat
     1021 aaatacaagg atcgcgcgcg agattcgctt gaattttgag cgggattttc agtaacccaa
     1081 aacacccaac cccacccact tacacccatc tcatccacag actttcaccc cgattttgtg
     1141 aacaacaaaa aaaaccgtct tgcaggtggt tggcctcact gcgtgacacc aaccaccatc
     1201 cccagtgttt ttcccgtgcc gtcgtcaatc acaaaatcgg aacccacgcc ggaggcgcgg
     1261 gcccccgcga ttttctgttt gacgaatcag ggaacggtga acggtacgcg gaattttttc
     1321 gcgttccgtg aggcgttggc ggggtgtcgg ggcgcagtcc tgaccaggtt cgtagaaccg
     1381 cacagggttg caaaggggtg tcccctttgg cacaagcgac ggagcgaaac gccccgtttt
     1441 gtgtacgccg cttatcgtgc ctgtgtttta ggagaacaaa aaaatgccgt gcatacagcc
     1501 cacacaatga cccacataat cacccacaac tcaaaacaca cagcccacac aatcacccac
     1561 actttaaccc acaaaaaaga ccacaacccc attgacaccc cacaaaacaa cccacacaaa
     1621 cggcgagtaa atcattttgc cgttttcgtg ccgcagccgt tccgcgcaat cgacaaactg
     1681 gcagtcaggg aatctcacga agtgcgcact tatacaaact caccttaggt tcgtttgtcg
     1741 tgcggtctgc gacgctcaaa aaaccgagaa acggcgggaa ttttcgggac aggatgtgta
     1801 attgtaatac cgtcacacgc gacgctatca caattgccat ctggtcaggg gtgcaccccg
     1861 acaccccgct agcctgattc agttttatct ttcgtcggtg agcgacggta ctttctgacc
     1921 tcggttttcc actcgaacgc gattcgtgaa ccgtcatcgt cgccctcgga aatatcatca
     1981 ccgatcacca tgtcggcgtc agtttcctga tcgagtttca gcacgtcttt gagtgcgccg
     2041 ccggtcgcca caaagcggcg cttgtgcgtc tggcgggtca gttcgaggaa ccattc
//
