LOCUS       CP093107                3223 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain PNUSAS021403 plasmid pPNUSAS021403_4,
            complete sequence.
ACCESSION   CP093107
VERSION     CP093107.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN07521433
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 3223)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS021403_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 80x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:41:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,696
            CDSs (total)                      :: 4,571
            Genes (coding)                    :: 4,460
            CDSs (with protein)               :: 4,460
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 46 of 111
            Pseudo Genes (incomplete)         :: 81 of 111
            Pseudo Genes (internal stop)      :: 23 of 111
            Pseudo Genes (multiple problems)  :: 35 of 111
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS021403"
                     /db_xref="taxon:28901"
                     /plasmid="pPNUSAS021403_4"
                     /geo_loc_name="USA"
                     /collection_date="2017-07-31"
     gene            244..414
                     /locus_tag="CKA18_23450"
     CDS             244..414
                     /locus_tag="CKA18_23450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPY21296.1"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNWVHGAEIV
                     ENAYRVLEVKA"
                     /name="replication initiation protein"
     gene            complement(623..955)
                     /locus_tag="CKA18_23455"
     CDS             complement(623..955)
                     /locus_tag="CKA18_23455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001070439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="UPY21297.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(1123..1338)
                     /locus_tag="CKA18_23460"
     CDS             complement(1123..1338)
                     /locus_tag="CKA18_23460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UPY21298.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1342..1827)
                     /locus_tag="CKA18_23465"
     CDS             complement(1342..1827)
                     /locus_tag="CKA18_23465"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UPY21299.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(1862..2296)
                     /locus_tag="CKA18_23470"
                     /pseudo=""
     CDS             complement(1862..2296)
                     /locus_tag="CKA18_23470"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2505..2828)
                     /locus_tag="CKA18_23475"
     CDS             complement(2505..2828)
                     /locus_tag="CKA18_23475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UPY21300.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             complement(624..955)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(2925..3116)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          3..373
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.8"
                     /coverage="87.0"
                     /evalue="6.66e-126"
     Typing          complement(1026..2515)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 agttgccgtt tttccatagg ctccgccccc ctgacgagta tcacgaaaat gacgctcaaa
       61 tcagcggtgg cgaaacccga tgcggcttaa agataccagg cgtttccccc tggtggctcc
      121 ctcgtgctcc cccgcattcc tgcctttcgg tttaccggtg tcattccgct gttatggccg
      181 cggtttctca ttccacgcct gaaactcggt tccgggtagg cagttcgctc caggatggac
      241 tgtatgcacg aaccccccgt tcagtccgac taccacgccc gttccggtaa ctatcaactt
      301 gagtccaacc cggaaagaca cgacaaatcg ccagtggcgg tagccattgg taactgggtt
      361 cacggagcag agattgtaga gaatgcctac agagttcttg aagtgaaagc ctgagtgcgg
      421 ctacactgaa aggacagttt aggtatctgc gctccgtgaa agccagttac catcggaaca
      481 aagagttggt agctctgaat tccggcaaac gaaccaccgt tggtagcggt ggtttttttg
      541 tttacaggga aaaagattac gcgcagaaag aaaggatctc aaggaaatcc ttttgctttg
      601 gccaatatgc ttcggtaaaa agttaatgcg cagaagattt tgaaaaaata ttaataacca
      661 aaactccaac gcaaataagg aacattcctg caattgcggg ccaatcaagt ttttgaccgc
      721 taaccaacca accagctagg cttattagta caattcccgc accagaccaa attgcgtaag
      781 caataccggt aggtatattt tccaatgttt gggaaagcag ataaaaggca gcgcaataac
      841 ttattgcagt tcctacagac ggccacaggc gtgtaaatcc ttctgaatat ttcataaagg
      901 tggtgcctat gacttcagcc acaatagccc ctcccaggaa aatatatgta ttcataaaaa
      961 tacctcatgt tgaaaaattt aaatatcttt acataacaac taattaatag aacccggctt
     1021 atcatagcga aggaccatga tgctgccact gcgatcgttc cagctccagc gctttctggt
     1081 gctgcaccgc ccgctcctgc tgccggtgag tttctatcgc gttcagcctt tcgacaaccg
     1141 gcgcagctgc tcgctcaaac tctgcacctg cctgctcaag accgtgacgc gctcgttcag
     1201 cgccgcgttc tcccgttgaa taagaccaga catcgtccgc cattccgcga aggcgttctc
     1261 ccactcgtcc agccttttcg agtagtcctg ctgtagctgc tctaatgcgc tcagcaactg
     1321 tttttccagc tccgtcatgt gctatttccc cgccagtatc atccagctcg agtcctctcc
     1381 gaactgtccc gcttccgggt tcaccctcac gcagcggcgt ctctgctcgc cgcaggtcga
     1441 gagctgtacg ccgctgttcc tctctgacag catggcctgc gtgctcttct gctcccggat
     1501 ggtcgtatag ttctcgagta tctgctgccc ctgccaccac agaatgcccg cgctcgacgc
     1561 tatcagcagc gcggagacca gaacgatggt cagccacgtc tggctgacca tgcgcagcat
     1621 ccctttcgtg cgctggctca tggctgagga cagcttccgg tcgtggtcga ggatggcggc
     1681 gctgattctc ttctcgcttt cgctcagttc cgctctgaca gacttctcgt gctcgctgaa
     1741 tgcggctttc agcatctcgc cggtagtctg ctgctgcgct ttcgatttct gctctaagtc
     1801 cttcgccagc gttaaaagac tgttcataga tggctccctt cagtcggatg tttcgccccc
     1861 cgtccgggtc ggcaatgctg atgctgcttt ttgtggtgcg caccacctca aaacctgcgc
     1921 tttccagcgc ctcagtgacg tcctgacgcg ttttcagctc cccggatgag gcaagggcaa
     1981 gcaggccgct cgtaatcgcc tgggcggctt cctgcttcgc ttccggcagc gcggaaggcg
     2041 agaccagcac ccgccggttc tccggcgcgt tcgggtcatg cagccccagc ctgccgttca
     2101 ctatggtctg ccaggcatcg atgcgcggac ggtcggcgcg gtcgtaatac ggctgtagcc
     2161 gcttgccggt cagaagctcc gtgttcggga tcaggaagtt cagctccagc cgccccttgt
     2221 cccggtgctc aacccacagc acgctgtact ggtctttatc gagtccgggc atcagaaccc
     2281 gctcgaaact cgccatcagc ttttcgcgct ggccgggcgg taaatcctgt tcggcaaaag
     2341 acagaacgcc ggaagtgtac tttttggcgt agggcgaggc gtcgataagc tcccggactt
     2401 catccggctt cccctgcaga acgctggcgc cgtcgcgctg gcgatcttta cccagcagat
     2461 aatcgaccgg cccgccgccg ccgccgcgcc cccgaggatg aaacttaacg atcatcatca
     2521 gcaccctttt ccagtacggc atgccgcaac cgctcgagtc cggcatcgat ggccatcagc
     2581 gcggcgacaa tctgcacgcg gtcgtgtccg cttccaccac cggcgttaac ctggcgggca
     2641 atctggttaa ggttgttccc catgccggca agctgacgaa gcagcgccgg cgagatcgac
     2701 ggaagtttgc cggcgcgtgc gggcttctcg tccaggcacg tctgccgcat ccaggccgcg
     2761 agttgcttac cctcgcagcg ctccagcaga cgccggtgct cgtcctcagt cacccacatg
     2821 gtgagcattt tgctgcgttt gtctgccaat ccggcctcct gataacgccg ggacggacgg
     2881 gaaatctttt cccggtcggc acggtgttgg acaagccgca ggcgcggcag tggttttagc
     2941 gggtttcggg gcgcagccct gaaccagtca cgtagcgcta gcggagtgta tactggctaa
     3001 acatgttatg acggagtggc aatttatgaa agtgcttcat gtgacagggg aaaaatgcgg
     3061 ctgccgggcg taagtgcaaa atgcaggtgg tgatgaaatg acgcctcctc gctcactcgg
     3121 tcgctacgct cctgccgtga gactgcggcg ggcgttacca gctcacagat tacgggataa
     3181 gcaaatgccg ctcgaagcag gaaaggccaa gaaaaggatg cgg
//
