LOCUS       CP093102                2096 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Hadar strain
            PNUSAS018090 plasmid pPNUSAS018090_6, complete sequence.
ACCESSION   CP093102
VERSION     CP093102.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN07427456
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Hadar
  ORGANISM  Salmonella enterica subsp. enterica serovar Hadar
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2019) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 2096)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS018090_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 88x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:34:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,630
            CDSs (total)                      :: 4,505
            Genes (coding)                    :: 4,397
            CDSs (with protein)               :: 4,397
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 44 of 108
            Pseudo Genes (incomplete)         :: 80 of 108
            Pseudo Genes (internal stop)      :: 23 of 108
            Pseudo Genes (multiple problems)  :: 35 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica subsp. enterica serovar
                     Hadar"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS018090"
                     /serovar="Hadar"
                     /isolation_source="stool"
                     /sub_species="enterica"
                     /db_xref="taxon:149385"
                     /plasmid="pPNUSAS018090_6"
                     /geo_loc_name="USA"
                     /collection_date="2017-06"
     gene            join(1435..2096,1..328)
                     /locus_tag="CID59_23150"
     CDS             join(1435..2096,1..328)
                     /locus_tag="CID59_23150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UPY14669.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          331..412
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(55..246)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 cggcgaatcg ctggcctgcg cgaccgccga actggtgcgc ggtgcggtgg ccgaaaccct
       61 gaaatattcc acgaagccgg ctgacatggt ggccgatcct gaatggttcc tcgaactgac
      121 ccgccagacg cacaagcgcc gctttgtggc gaccggcggc gcactcaaag acgtgctgaa
      181 actcgatcag gaaactgacg ccgacatggt gatcggtgat gatatttccg agggcgacga
      241 tgacggttca cgaatcgcgt tcgagtggaa aaccgaggtc agaaagtacc gtcgctcacc
      301 gacgaaagat aaaactgaat caggctagcg gggtgtcggg gtgcacccct gaccagatgg
      361 caattgtgat agcgtcgcgt gtgacggtat tacaattaca catcctgtcc cgaaaattcc
      421 cgccgtttct cggttttttg agcgtcgcag accgcacgac aaacgaacct aaggtgagtt
      481 tgtataagtg cgcacttcgt gagattccct gactgccagt ttgtcgattg cgcggaacgg
      541 ctgcggcacg aaaacggcaa aatgatttac tcgccgtttg tgtgggttgt tttgtggggt
      601 gtcaatgggg ttgtggtctt ttttgtgggt taaagtgtgg gtgattgtgt gggctgtgtg
      661 ttttgagttg tgggtgatta tgtgggtcat tgtgtgggct gtatgcacgg catttttttg
      721 ttctcctaaa acacaggcac gataagcggc gtacacaaaa cggggcgttt cgctccgtcg
      781 cttgtgccaa aggggacacc cctttgcaac cctgtgcggt tctacgaacc tggtcaggac
      841 tgcgccccga caccccgcca acgcctcacg gaacgcgaaa aaattccgcg taccgttcac
      901 cgttccctga ttcgtcaaac agaaaatcgc gggggcccgc gcctccggcg tgggttccga
      961 ttttgtgatt gacgacggca cgggaaaaac actggggatg gtggttggtg tcacgcagtg
     1021 aggccaacca cctgcaagac ggtttttttt gttgttcaca aaatcggggt gaaagtctgt
     1081 ggatgagatg ggtgtaagtg ggtggggttg ggtgttttgg gttactgaaa atcccgctca
     1141 aaattcaagc gaatctcgcg cgcgatcctt gtatttatac ttaagggata actctaggat
     1201 tcaaattcgc ctccagccct tgtgccgcaa ggcctgaagg gggatttgtc ggaaaatggt
     1261 tttggagtta ttctgtcggg agtggtcgca ttaaaagcga cccccgcaac gagggcaatc
     1321 gttcgggggt gtgaccacct gtaggaattc gaattggtga tacgactaac acaacaggtg
     1381 atatggcaat gataacacgt cagatgagcc atcgcccact atcgggtggt gcgcatgaaa
     1441 aaccctgatc tccagaacct cacggactat tccccctcag atgcgccctg ggacgctcac
     1501 agaagcgttt ctgatgacgt gggagggatt tacctgcttg cagccgaata tgagcgctac
     1561 ggggcgcgta tggccctctg tggtggttta ctgcgtttcg ggtggtctac cctcaaggaa
     1621 accggagaaa cgcgtctgag gctgcgtgag gcgcatttct gccgtgtccg gcattgtcct
     1681 gtctgccagt ggaggcgctc cctgatgtgg caagcccgtt tctaccagtc cctgccgcgt
     1741 atcgtggcgg attatcccga tgcccgctgg atgttcctga ctctgaccgt gcgcaactgt
     1801 gcgatcgggg agctgggcga gatgctgaac cggatgaatg cagcttttca gcgcatgaag
     1861 gttcgcaagg agttccggcc tgtgcagggc tggatacgta ccacggaagt cacccgcggg
     1921 agcgacggca gcgcacaccc gcacttccac accctgatga tggtgccgcc tggcatgcta
     1981 aatgggaaaa gttacgtcag gcatgaacgc tgggttgaac tctggcggga gtgtctgcgg
     2041 gtcgattatg acccgaatgt tgatgtccgg gcagtgaaac ctcgtaagcc gaaggg
//
