LOCUS       CP093100                3904 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Hadar strain
            PNUSAS018090 plasmid pPNUSAS018090_4, complete sequence.
ACCESSION   CP093100
VERSION     CP093100.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN07427456
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Hadar
  ORGANISM  Salmonella enterica subsp. enterica serovar Hadar
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3904)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3904)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2019) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 3904)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS018090_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 88x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:34:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,630
            CDSs (total)                      :: 4,505
            Genes (coding)                    :: 4,397
            CDSs (with protein)               :: 4,397
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 44 of 108
            Pseudo Genes (incomplete)         :: 80 of 108
            Pseudo Genes (internal stop)      :: 23 of 108
            Pseudo Genes (multiple problems)  :: 35 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Salmonella enterica subsp. enterica serovar
                     Hadar"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS018090"
                     /serovar="Hadar"
                     /isolation_source="stool"
                     /sub_species="enterica"
                     /db_xref="taxon:149385"
                     /plasmid="pPNUSAS018090_4"
                     /geo_loc_name="USA"
                     /collection_date="2017-06"
     gene            complement(join(2979..3904,1..625))
                     /locus_tag="CID59_23100"
     CDS             complement(join(2979..3904,1..625))
                     /locus_tag="CID59_23100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UPY14661.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARYGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPELLLQYR
                     KVMKTVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARYLDKLGR
                     NVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRNKL
                     QQAESEWDKENAAFKRTEGYKYVGDLDRYREREILAAASLENTRQKVAEEVSVARSQML
                     SLEPELSISGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWAREASRSNERDQDMER"
                     /name="MobA/MobL family protein"
     gene            797..1243
                     /locus_tag="CID59_23105"
     CDS             797..1243
                     /locus_tag="CID59_23105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="UPY14662.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWERRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     gene            complement(1504..2523)
                     /locus_tag="CID59_23110"
     CDS             complement(1504..2523)
                     /locus_tag="CID59_23110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPY14663.1"
                     /translation="MSAALQYFEENLPRRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKF"
                     /name="replication initiation protein"
     Typing          complement(1749..2523)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.613"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          complement(3..625)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.038"
                     /coverage="99.0"
                     /evalue="2.4e-137"
     Typing          complement(2983..3902)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="89.968"
                     /coverage="99.0"
                     /evalue="1.4e-155"
ORIGIN
        1 tgataccctg ttctttcaga gaacgatgat ctacgcgcga ctcgtgaccg tatcgcgcaa
       61 ggtgctcatt ctgcacatct gcccagcggg aacgcagcgc aacaagggcg gcttttcgct
      121 ctccggctgt ctggggaata ctcgcttttt ttgcgcctcc ccgttctggt gatttgctgt
      181 tggcacgttt aaaaaattgc tgcggatcgc gttcaatacc atcattaatc cgctcgcaaa
      241 acatgatatg cgcgtgtggc tgttcctttc cgtcgattgc acctggcgga ttgtggatcg
      301 cgtactggta ggcatggcga tcgccaagtt ccttttgcac gaaatcttca acaagttcta
      361 tccgttgttc gcgtgtcagt tcacgcggta acgcgatctc aatttcacgg tatgcagtcc
      421 cgttttttcg ttcaaattca tctgcggctt tccatagctc tgcgggattt ttcttcgccc
      481 atgatggcat gttacctgat gacgaaaatt ccagatcctc ccgcgatttg tagctcttat
      541 attcgccgga tctggaaatg taatcagcat gttttaaggc actgcctttt gctccagctt
      601 tgacggtgca atggtagctt gccatctgcc ttttagccct ccgcaggagc gcacagtttc
      661 tcgacgaagg agagaaacta ctaagtgcgc atccctgaat taatcaggga tgattttacg
      721 gtctcacacg caggcagaca aggtgatatt atgcacaata acaactcaca ttaacggcaa
      781 aaatgcagag gtaagaatga caaatcgtga agagtggtta agtgcaaaaa ttgcctacat
      841 caacggactg aaatcaccgt cagagcagca gagattactt gtgttactgg cagagaaaaa
      901 aaaccgaaca acgacggatg aaaaaacgtt gtccgcactg atacgggcag aaaaaaccgc
      961 agagaaagca gccgcagcaa aagccagggt aacggcaatc atagcggcag aacggaaggc
     1021 agccgcaagg gcggaacgaa aggcgcggga tcatgaactc tacaaggccg caggcctcat
     1081 gattgtggca ggactggtgg acagcaaaac cggaaaacca aagtttagtg ctgccgaact
     1141 ggtaggcgca ctcgcaggaa tcgcagagct accgcgcaac cacccaaaat ggcaggaatg
     1201 ggaaagacgc gggaaggagc tactaaccaa agacagtgcg taagagcctc cgttcacgtt
     1261 ccgtttccct ggtgcttcct cgctcattcg ctcgctacgc tcggtcatga gactgcggcg
     1321 agcacaacca cctcaatcat gcggtaagcc gcaccattgc tgggctgaca ggagaaaacc
     1381 gccggaaagc ccgctgctca aaaagacgcc gaaaggcgct gttatctgat ataggcttgt
     1441 tcatgtccgc gaatttaacc acccattaac aaaaacaggg ggtaattgtc atttttctgt
     1501 taattaaaat ttaattattt gtttcttggt taaccattct ccagaattat ccatccagcg
     1561 tcgaatagtc cggctgctaa caccaaccgc cactgcaata tcttccgttg acgctcccaa
     1621 gatatacata tcaagcgccc tacgacgttt gtcgtcgtta gcagtccacc gaacagcggc
     1681 gctttttttc cctttgtccg actgattttc tgacgaattg gccttcccgc ccttgcgacc
     1741 gcgtgctgcc tgaatttctg gcgtgtgcgt atcagccaca tactgtgcga aagtttccgg
     1801 cgtgaagttc ctgtgcgtgt atttcgcaat gctcttgcca atagcccgac attcaggcgg
     1861 agaaagcgga acgggaagcg atgcgttgta catttcgaca cgctgaatca cggcatcaag
     1921 ccactgtgag aatgctggcc agccctgacg aatcgccctg taagcccatt tgcgcgtcat
     1981 ttcgaacagg tggcagtttc gccccatccc gtaatgttta tcgatgctac gacgcgctga
     2041 ggcgctcaaa tcgagataat cagccagttc atcgagggta taggcttcct cgcgccactc
     2101 catcacctgc cattccaggt ggaacggatt tttgcaaatc agtccgctgt agttcacatc
     2161 agcacaaagt ttctcacaca gcgaacgttc aaccgctgcg gcatatttca gcgccttaac
     2221 cgacgcatca ggcgcggttc tcacggcgat attgagtgca tagagcaggt gagcgtgtcc
     2281 gttcacagga tttttaacgg tgatgttcgg cgcgggggcg ttccggtcgc tccagtcaat
     2341 cgctgccccc tcgcggtcaa cgtcaaaaac cagccagaac tgcgcatgag gctggttctg
     2401 ctggatgtac cgcgcaagca gcgcacgccc tttgccggag atgcgaagac caaaagcgag
     2461 atcatccgtg tgatagggac ggcggggtaa attttcttcg aagtattgaa gcgcggcgct
     2521 catgtgttac gattccttcc aggttatcga ccgacatcgc ccctgtattt tcgtgacagt
     2581 cttggcggat agacacgaat ttcaggggcg tttgtttttc agtcgcttac actaccccca
     2641 acgacaaaac ctgtcgagtc ttcccgcaaa cccgatccat ttaccataac tcctgttgta
     2701 cgtaccccgt aaaacgccct cagtcgcttc ctgacgcaaa aaacgcaaaa agacaggaaa
     2761 acaccaggcc aaaccagaaa aacgcgtcag aatcgttttc agagcgttgc ataactatgc
     2821 acgaaagcga tgcgcgatct gtttcgagcg ttcagaaggg cgaacgggtc aaaacagcaa
     2881 actttctcat cagaaaacgg tgaacgggac gcggaatttt ttcgcgttcc gtgaaacgtt
     2941 ggcggggttc ggggcgcagt cccgatattg ctacattttc aacgctccat atcttgatca
     3001 cgttcgttac tacgtgatgc ctccctggcc caggatcgct gtatacgcag tgccttttcc
     3061 tcctgttgct gccgttcctg cgccatttct gccagtaact catgtcgcat ttgagctttt
     3121 tcatctccag atatactgag ttcaggctcc agagataaca tctggctacg ggcaacggat
     3181 acttcttcag caaccttttg cctggtattc tctaaagatg ccgcggccag aatctcacgt
     3241 tctctgtacc tgtccagatc cccaacgtac ttatatccct cggtacgctt aaaagcagcg
     3301 ttttctttgt cccactcgga ttcggcttgc tgtagcttgt tcctgaattc attcctttca
     3361 tgttcagcgg tttccagcac acttttttgc tccagaatac gcgcatcaat ctcccttttg
     3421 tcagcccccc gaaacaggcc acgaatccca ttcaaagcat tgcgttgttc ctgtagctcc
     3481 cgcagctccc tttgtgcgga aacgacatta cgccccagtt tgtctaaata ccgtgcccct
     3541 tcatatattc gcctgctcca ttcggaaaga gagtcttttt ttgctttcgc attctgaagc
     3601 agcttatgtt ctttgagcgc attgggattg gcatccccta aacgagcaag ccttgcttct
     3661 ccctgaatga ccgttttcat aaccttgcgg tactgaagca ataactccgg tgaacgggct
     3721 gaacgaacag gctcaactgc cttgattttt tgcttttgct cctgttcctg ctgaatggca
     3781 tttgcggcat ctctggcggt cttgagttcc cgctcggcat tcctccgttc ctggattgca
     3841 acaatctgct caccattgag actggcggcc tgaacggggc caagatgaac ttccggcgtg
     3901 cgat
//
