LOCUS       CP093095                1241 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain PNUSAS037609 plasmid pPNUSAS037609_2,
            complete sequence.
ACCESSION   CP093095
VERSION     CP093095.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN08815166
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1241)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1241)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 1241)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS037609_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 90x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:13:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,645
            CDSs (total)                      :: 4,518
            Genes (coding)                    :: 4,406
            CDSs (with protein)               :: 4,406
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 45 of 112
            Pseudo Genes (incomplete)         :: 82 of 112
            Pseudo Genes (internal stop)      :: 23 of 112
            Pseudo Genes (multiple problems)  :: 34 of 112
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1241
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS037609"
                     /db_xref="taxon:28901"
                     /plasmid="pPNUSAS037609_2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            join(891..1241,1..159)
                     /locus_tag="DAF42_23225"
     CDS             join(891..1241,1..159)
                     /locus_tag="DAF42_23225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000634347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="UPY10272.1"
                     /translation="MIVASEHQAKLRQKEIQEIDKKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELVRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSGE
                     ESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 tgtgcttacg ctttagatcc tcacgaagtc tggaagggat ataacacatc aaaagactac
       61 tcagcctttg ttaccaagac attagtgaac aaggatggag aaataaaacg ccggataatg
      121 gctatgtttt ccggagagga gagcggtcaa gagcagtagc gaagcgactc ttgacggctc
      181 ggaacgaccc ccaccctcag aaagggggat ggttcgccac agcgagccat ccccataata
      241 agccgccctt taagcagtag atcccataaa taaataaaac agcacatcac ttttgtaatg
      301 tgcggcattc ctttgggact aaaagaagtt agccaggaat gtaatacaga aactttaccg
      361 acaaggaggt catcatgatc acgtcaacaa tcatcacaat catcggctta attgggagtc
      421 tcataacgat ttaccgagag atatacccga aggataagca ctaattagcc agtatacact
      481 ccgctagcgg agtgactggt tcagggcttc gccccgaaac cccatgaaaa ccgtcaatca
      541 tggtgatggc tcactacgcg agccatcacc agatacaagg ttaaacgggc attttgatcg
      601 tcaaggtcaa gccgctaacg cggtcgccta tggcgaaccc tgaccctcaa aatgcccgac
      661 cggagggagg gagctacctt gaactttggt gttgtctgtt ggttttcata gaagagaata
      721 gagataaata ataagttatt gatttttata gttttggttt tttctgatag gacacagctg
      781 gtgtccgcac gtgaggacac agctggtgtc cgcatgtggc tggacatagg acaccacaag
      841 tcctatgatg ggacaaaaat gtcctatcaa aaagacactg agggataaag atgatcgtag
      901 cttcagaaca ccaagcaaag ctaaggcaga aagaaataca ggaaatcgac aagaaggcat
      961 ctaaagagca cgaggaggca aagaagaaca gtaacttcac tcagacatac ccaaagggct
     1021 ggcaacgcat tagagagctt gtgagggaca aacagggtgc tgccgctata ggtctttact
     1081 catttttcgc ggaacacata gatcctacat gcggtgcagt ggtctgcgat cagcagtttt
     1141 tagctaatca gatgggtgtt tctactcgaa caattcgtcg ttggttagat tatttggagg
     1201 agaaaggtgc tttggtaaga ataccagttg ctggaaaggt t
//
