LOCUS       CP093094                2285 bp    DNA     circular BCT 06-MAY-2022
DEFINITION  Salmonella enterica strain PNUSAS037609 plasmid pPNUSAS037609_1,
            complete sequence.
ACCESSION   CP093094
VERSION     CP093094.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN08815166
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2285)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2285)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 2285)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS037609_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 90x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/05/2022 15:13:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,645
            CDSs (total)                      :: 4,518
            Genes (coding)                    :: 4,406
            CDSs (with protein)               :: 4,406
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 45 of 112
            Pseudo Genes (incomplete)         :: 82 of 112
            Pseudo Genes (internal stop)      :: 23 of 112
            Pseudo Genes (multiple problems)  :: 34 of 112
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2285
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS037609"
                     /db_xref="taxon:28901"
                     /plasmid="pPNUSAS037609_1"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(806..1000)
                     /locus_tag="DAF42_23215"
     CDS             complement(806..1000)
                     /locus_tag="DAF42_23215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UPY10271.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1776..2024)
                     /locus_tag="DAF42_23220"
     CDS             complement(1776..2024)
                     /locus_tag="DAF42_23220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000508159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPY10270.1"
                     /translation="MGFWDKAFDVAKTVGKAAWEETKAANERAKQYREEVVSLSDRELA
                     RIIATERHSTPLRAGAAMAELKRRGYANAEEIKALLK"
                     /name="hypothetical protein"
     Typing          651..733
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.81"
                     /coverage="100.0"
                     /evalue="1.76e-34"
     Typing          1037..1135
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.22e-45"
     Typing          1260..1515
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="89.0"
                     /evalue="1.21e-116"
ORIGIN
        1 taactatcaa aaaaaagcaa taaaagccta atgcccccgt ggtgggtaat gtataaatca
       61 cggggagcgt agcgaccttc gtctagatcg tttctttgtt tttcttacct tgcaacggct
      121 tgattttgtg ggtgaagtgc cagacgtttg caatcacact ttacctctta cagctcctta
      181 gttgctcatt ttatcaggtg ctagttatcg tacagcgaga cggggcagag cttaactctt
      241 tcgcggttaa gttacgtttc caccagttgc ctgtttatcc tgccggagtc cggggcgtag
      301 acctgagcat ctaaggtgca gatatgggtt taatgtcgtt gaatggtatt aagctggtag
      361 tgacaatact agccagccct gctaggattt agattgctac gtctgatcct ggcaggtatc
      421 tgcaaagaat tagagtaccg aagccctgtg attctgtcac ggggcttttg tacatttagc
      481 gcatgaagat cattttgatc atgtcagatc gttttcaccg ctcgccgcag ccgaacgacc
      541 gagcgtagcg agtcagtgag cgaggaagcg gaagtgcgcc tgatgcggca ttttctcctt
      601 acgcatctgt gcggtatttc acacccggca tggggcactt ttcatacaat ctgcattgat
      661 gccgcatagt taagccagta tacactccgc tatcgctacg tgactgggtc agggcttcgc
      721 cccgacaccc gctgacgcgc cctggcgggc ttgtctgctg ccgaaaacgc tcgcggacaa
      781 gccgtgagcg cctccgtcag cttcgttatg ttcctgtttc actttcggtc tcaaagcgaa
      841 cctggatgct gttctggagt tcttccgcga gttcgtgcag tcgttcgcac atggccgcct
      901 gttcgtcggc atccagagca tccagttttt caagcagtgt caggctctgg cttttgataa
      961 atcgcgccat attcagcgca gtttgttgct gtttgttcac cttccgttgt tctccgtcag
     1021 taccgggtgt cgggtggacc ctgaccaggt ggtaattgta agacgttgcg ggcgacggta
     1081 ttacaattgc acatcctgtc ctgttttttt aggacgtatc atggcacagc atatcaactg
     1141 ataaataatc cctgtgcagt gcagccgctg ttgcataaaa tttcgctctg cgtcgagtgt
     1201 ttcttaatca ataattccgc tgatactccg gaaaaacgcg agtctgttct catgcctgaa
     1261 atgcccacac cccacgcaaa aacaattttt tgctgatttt tctttataaa tagagagtta
     1321 tgacaaatta gttcttcttg ctctctttgt gatatttaaa aaagcggtgt cggcgcggtg
     1381 ttgtagctgc gccaacaccg ctttttaggg gtggtactga ctattttcat aaaaaacatc
     1441 attttatatt aggggtgctg ctagcggcgc ggtgtgtttt tttacaggac gcccctgggg
     1501 gcgctgctag gggtgtctgt tcagatatgt agcaatgagt cagggattca cgaactgaaa
     1561 atgtccgaaa atgtgtctca tgggcaccgt atgcgcccaa accgatcgcc attcactttc
     1621 atgcatagct atgcagtgag ctgaaagcga tcctgacgca tttttccggt tttcgcttgg
     1681 taaaacatct ctttttgcgg tgttcgcggc agaatcgcgt tcagcgcgtt ttagcggtgc
     1741 gcgtaatgcg acgttatggt aaatggagtc tatggttatt ttaggagggc ttttatttct
     1801 tcggcattag catagcctct tctttttaac tcagccattg cagcgccagc tcttaatggt
     1861 gtgctgtggc gttctgttgc aatgattctt gctagttcgc gatcgctaag tgacactacc
     1921 tcttctctgt actgcttggc tcgttcattt gcagcttttg tttcttccca tgcagctttt
     1981 cctacggttt tagctacatc aaaagcttta tcccagaatc ccatagtggt ctcctttatc
     2041 caatcggaga tgttgatatt ctgcggctac ggcattttgg gcagtagtct ggtgtcccat
     2101 aacctgctct gctagtccat tcatgcttac aatccaagca cttagctcta tatattgttg
     2161 gtgccatttt ccacctctgt taaacaaaga attgtatagt gcactctaca taatccgttt
     2221 aattggtgtc aacgatgtgc tggaggacgg ctatcaggtt gctcttagtg ttactaagaa
     2281 catga
//
