LOCUS       CP093092                4074 bp    DNA     circular BCT 05-MAY-2022
DEFINITION  Salmonella enterica strain PNUSAS039582 plasmid pPNUSAS039582_4,
            complete sequence.
ACCESSION   CP093092
VERSION     CP093092.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN09011259
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4074)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4074)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 4074)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS039582_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 252x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/04/2022 09:54:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,790
            CDSs (total)                      :: 4,662
            Genes (coding)                    :: 4,539
            CDSs (with protein)               :: 4,539
            Genes (RNA)                       :: 128
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 49 of 123
            Pseudo Genes (incomplete)         :: 87 of 123
            Pseudo Genes (internal stop)      :: 25 of 123
            Pseudo Genes (multiple problems)  :: 34 of 123
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4074
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS039582"
                     /db_xref="taxon:28901"
                     /plasmid="pPNUSAS039582_4"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(join(2626..4074,1..711))
                     /locus_tag="DEM16_23940"
     CDS             complement(join(2626..4074,1..711))
                     /locus_tag="DEM16_23940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UPX71673.1"
                     /translation="MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPRELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQ
                     NRLINRLNLEIQISRTELRNSGLTEPARRVADLLNIVLPDNATSYTLRDIIEALPKDSN
                     AAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWA
                     APEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGASGLAALRVQL
                     LKREEELRRKEQEDTERSRAERRAEQLRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMT
                     CYLLLHNRNGEYTLWGNELEKYRTRIFERVDLMRDRSGYICDRSEIGQHPPLQRVYSSA
                     TFEQLLTQVCQTWPQYTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLLPTL
                     MPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISALTDKG
                     LRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRT
                     WDEWRREEDARTHATERRHDRGWSQ"
                     /name="MobA/MobL family protein"
     gene            890..1144
                     /locus_tag="DEM16_23945"
     CDS             890..1144
                     /locus_tag="DEM16_23945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UPX71674.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVIVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPGQ"
                     /name="mobilization protein"
     gene            1677..2378
                     /locus_tag="DEM16_23950"
     CDS             1677..2378
                     /locus_tag="DEM16_23950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPX71675.1"
                     /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCIGRLKSGADAESPKL
                     QKTMTITAAEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKDDEKREEFRWIQYRAQY
                     AKGEARAQITFSDAVMPYLTQLQGQFTRVVIKNISRLSRSYSIRIYELLQQFRSTGERI
                     IALDDFRSMLDIEHKYQTYKSLNQQLLRPCIDELNKKSDLAVTVETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     Typing          complement(354..712)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.722"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          713..889
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.315"
                     /coverage="100.0"
                     /evalue="5.65e-83"
     Typing          1678..2378
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.715"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2..798)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.496"
                     /coverage="100.0"
                     /evalue="1.3e-175"
     Typing          complement(2630..4071)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="85.447"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 acgggaaatc tgtatttcca ggttaagtct gttaatcaga cgattctgtt cgccgcgttc
       61 tgtttcgata ccgcgtgttt ccatcgcaca ggcagacttt ccgaggtgaa taccaggcgt
      121 tttctcaagc ccctgtcgct cgtatgaacg atggtctatc tcttcctgat aaccggcgtt
      181 cgccagtgcc ctgttcgcat ggtcagccca tgatgcacgc cacgtctcgg catgtgtccg
      241 gtcgttccag tccctgacct ttccaccgaa tccagcaggt ccgacagctc tcgtggtcag
      301 catgatgtgc gcatggggat ttgttttatc catgtgatgg aacgccacat cagcaatcat
      361 gccctgactg acaaagtttt ctctgacaaa ggcgagaacg gtttcccgtg cggcatcctg
      421 cggcagttcg cgggggatgg cgagttcaat ttcccgcgca agttgtgagt tcttccggcg
      481 ttcggccttc tcaacggcat tccagagttc ggcacggttc gtacaccagg caggggctgt
      541 cgcgggagtc agaatcacag cttcagccac accgcttttg cgggtgtagt cgtgagtcag
      601 tccggtacgc tcatcaagca tcagtgaacc ggaacgatag gcagcagaag caacggcgct
      661 gtagccgctg tttctggaga tgattttcat gctgagatga taaatcgcca tttctgccgt
      721 aatgcctttt tgtggttttc tttcagcccc gcagggcgca cacaatcgaa acgaagtgaa
      781 gtttgtataa gtgcgcactt cgtgattttc cgtgcattat gccagctcag tttttaaact
      841 accagtgacg cgctaaaatg cgatttttca tcgcgcacgg agttacatca tgagcagaac
      901 actcgaacag aagattgctg atgctgaggc cagattacag cgcctgaagg cgaagagcag
      961 gagtctggac acagcgcaga aggtcattgt gggtgcagca ttgctggcaa aggtcagaaa
     1021 gccggaggag gtgcagttgc gtgcctggtt actccagttc ctgaaggcag aggtgacacg
     1081 acaggctgat gtgacgcgca tactgccgct gattaacgag ctggaagcgc tgccaggaca
     1141 gtgattgtat cgtccgctcg ccgcagtccc agcgaccgag cgttagcgag cgagtgggcg
     1201 aggaagcgga agtgaatccg tcgcctgatt gagcacatac gcacggtttt tcgggaggtg
     1261 atatgcgctg aacccgcatg aatactggat ttccacaggg ttggaggggg tgtattcgga
     1321 acttgcaatt ctgctttttt gcaacgcatt gtttttattg gttttttgtt ttcagcactc
     1381 caagttatcc acaggctcgt cgttaagttt ttagatcttg tttttaagat cttgttttta
     1441 atacttgttt tagcgccaaa attccttata gaaaacaaaa tgttacaacg ctataggtaa
     1501 tatgatttaa ggtaaaggta atatgattta aggtgtttag gtggaggaat ttaaggtaaa
     1561 ggcaatatga tttaaggtaa tattcacaga aaaagggata ttaaaataaa aaggcattgc
     1621 ctttcgttga gggtatgttt atcttttatt cattaccttt tggggaggga tgctctatgt
     1681 cggatctaat tgcctataaa tccaatgcgc tggttgaagc cagttataaa ttgaccctac
     1741 aggaacagcg atttttgtta ctttgcatcg gtcgattgaa gtctggggct gatgcagaat
     1801 ctccaaaatt gcaaaagaca atgaccatta cagctgcgga atatttcgat tcattccctg
     1861 acatggggcg gaaaaatgcc gaggttcagt tacaggaagc aattgatcgt ttgtgggaca
     1921 ggtcaatcat tctcaaggat gacgagaagc gtgaggagtt ccgctggatc cagtatcggg
     1981 cacagtacgc taaaggcgag gccagagcac aaataacatt ttctgacgca gtaatgcctt
     2041 atttgacaca actacaaggg caatttacta gagttgtaat caagaatata tctagattat
     2101 caagaagtta cagtataagg atatacgaac tcctccagca gttccgcagt actggcgaac
     2161 gtattatcgc tctcgatgat tttcgctcaa tgcttgatat agagcataaa tatcaaacat
     2221 ataaatcact taaccagcaa ttattaagac cctgcattga cgaactgaac aaaaaaagcg
     2281 acctggctgt aacggttgag acgatcaaaa aggggcgcac ggttgtagcc ctgcattttc
     2341 gcttcaagga agacaaacag atcaagatga cgatctaaaa tcgattttaa ggcacctaaa
     2401 acgctccctg ctgcgttttt tttgtgttag tagtgcgaag gtactattga agtgaaaaat
     2461 tgcgtcaaaa gcgctctaat gcagcgaaaa aagaaccccc aatttttggg ggcggaaaaa
     2521 caaagctatg ctgtgtgtgc ttcttgcatt catccctgtc gatgaacatc gaagaacatc
     2581 gacgaacata acacgatgtt aaacaaaaca aaatattgtt cacattcact gtgaccaacc
     2641 gcgatcatgt ctcctctcgg tggcgtgtgt tcgtgcatct tcctcgcgcc gccattcgtc
     2701 ccaggtacga ttaaaaccca gcgagcggaa cagatgatcc ggctgttttt ctggtgtgtt
     2761 gacggcagca aaaagcggtg cctcacgggt tttcagatga aactccataa gttccggcgc
     2821 aggtgatatg tggctgtctg catcgtgatt tacggcaaca ccataccctg cataccgtaa
     2881 ccccttatcg gtcagtgcac tgatgaccag ctggctgtta tcggctgagg gaacggcaaa
     2941 cgcgggatac agcgtaccat taagccggac aacaccgccc agagagtcat ccacgcccat
     3001 gaccagcaaa agctgaagct ggcgggtttc ccggtcgaca gaactcatta ccggcatcag
     3061 cgtcggtagc agacgtccct gcgtaaaatc caccttcctt gctgccagtg atggcatggc
     3121 tggctggcgg tcttctccaa gacagaaaga ctccggccat gtcttcggct ggcggagatt
     3181 gcgggtatat tgcggccatg tctggcaaac ctgcgtcaga agttgctcaa aggtcgcaga
     3241 ggaataaaca cgttgcagtg gtggatgttg accgatttcg cttcggtcac agatataacc
     3301 actcctgtca cgcattaaat caacacgctc aaagattctg gtgcggtatt tctccagctc
     3361 gttcccccag agcgtgtatt ctccgttccg gttgtgaagc agaaggtaac aggtcatttc
     3421 cccgttacca ggcatggggg cctcgccata ccccgtaacg actgcgctca gtacccctga
     3481 atccataacg gcattgtcat ttttcctgag ctgttccgct cgtcgctccg cgcgactacg
     3541 ttctgtatcc tcctgctcct tccggcgcaa ttcctcttca cgtttaagca actggactct
     3601 gagagctgca aggccggatg ccccccactg ctgccactgt ttttcaaatg ccgtctgact
     3661 cgcgggaatg tcctgtttct ccaccttccg gtaatgctgt cgcaattttt ccatttgctg
     3721 gctcagcgac tggatttttc cctgttcgct acggtattcc ggtgccgccc attgcatcag
     3781 gggaatacgg gaaaaaccgg acgaaaacgg cgatgatttt ttcaggctgg cagcatggct
     3841 catcgcttcc tttcgttcgg tgttcagctc ttcccagcgt ctgcgcgtcg cctgcatatc
     3901 tgccatcatc gacatggcat tactggtgag tttccatgcc gcattactgt ccttcggcaa
     3961 cgcttcgatg atgtcacgta gtgtgtacga agttgcgttg tcaggaagca cgatattcag
     4021 aaggtcagcc acacggcggg caggctctgt cagcccgctg tttctgagtt cggt
//
