LOCUS       CP093080                2096 bp    DNA     circular BCT 05-MAY-2022
DEFINITION  Salmonella enterica strain 2016K-0377 plasmid p2016K-0377_4,
            complete sequence.
ACCESSION   CP093080
VERSION     CP093080.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN05250424
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 2096)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2016K-0377_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 102x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/04/2022 09:48:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,574
            CDSs (total)                      :: 4,449
            Genes (coding)                    :: 4,341
            CDSs (with protein)               :: 4,341
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 44 of 108
            Pseudo Genes (incomplete)         :: 80 of 108
            Pseudo Genes (internal stop)      :: 23 of 108
            Pseudo Genes (multiple problems)  :: 35 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2016K-0377"
                     /db_xref="taxon:28901"
                     /plasmid="p2016K-0377_4"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(928..1917)
                     /locus_tag="BAA79_22870"
     CDS             complement(928..1917)
                     /locus_tag="BAA79_22870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UPX49435.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          complement(845..926)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          1011..1202
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 tttccgacaa atcccccttc aggccttgcg gcacaagggc tggaggcgaa tttgaatcct
       61 agagttatcc cttaagtata aatacaagga tcgcgcgcga gattcgcttg aattttgagc
      121 gggattttca gtaacccaaa acacccaacc ccacccactt acacccatct catccacaga
      181 ctttcacccc gattttgtga acaacaaaaa aaaccgtctt gcaggtggtt ggcctcactg
      241 cgtgacacca accaccatcc ccagtgtttt tcccgtgccg tcgtcaatca caaaatcgga
      301 acccacgccg gaggcgcggg cccccgcgat tttctgtttg acgaatcagg gaacggtgaa
      361 cggtacgcgg aattttttcg cgttccgtga ggcgttggcg gggtgtcggg gcgcagtcct
      421 gaccaggttc gtagaaccgc acagggttgc aaaggggtgt cccctttggc acaagcgacg
      481 gagcgaaacg ccccgttttg tgtacgccgc ttatcgtgcc tgtgttttag gagaacaaaa
      541 aaatgccgtg catacagccc acacaatgac ccacataatc acccacaact caaaacacac
      601 agcccacaca atcacccaca ctttaaccca caaaaaagac cacaacccca ttgacacccc
      661 acaaaacaac ccacacaaac ggcgagtaaa tcattttgcc gttttcgtgc cgcagccgtt
      721 ccgcgcaatc gacaaactgg cagtcaggga atctcacgaa gtgcgcactt atacaaactc
      781 accttaggtt cgtttgtcgt gcggtctgcg acgctcaaaa aaccgagaaa cggcgggaat
      841 tttcgggaca ggatgtgtaa ttgtaatacc gtcacacgcg acgctatcac aattgccatc
      901 tggtcagggg tgcaccccga caccccgcta gcctgattca gttttatctt tcgtcggtga
      961 gcgacggtac tttctgacct cggttttcca ctcgaacgcg attcgtgaac cgtcatcgtc
     1021 gccctcggaa atatcatcac cgatcaccat gtcggcgtca gtttcctgat cgagtttcag
     1081 cacgtctttg agtgcgccgc cggtcgccac aaagcggcgc ttgtgcgtct ggcgggtcag
     1141 ttcgaggaac cattcaggat cggccaccat gtcagccggc ttcgtggaat atttcagggt
     1201 ttcggccacc gcaccgcgca ccagttcggc ggtcgcgcag gccagcgatt cgccgccctt
     1261 cggcttacga ggtttcactg cccggacatc aacattcggg tcataatcga cccgcagaca
     1321 ctcccgccag agttcaaccc agcgttcatg cctgacgtaa cttttcccat ttagcatgcc
     1381 aggcggcacc atcatcaggg tgtggaagtg cgggtgtgcg ctgccgtcgc tcccgcgggt
     1441 gacttccgtg gtacgtatcc agccctgcac aggccggaac tccttgcgaa ccttcatgcg
     1501 ctgaaaagct gcattcatcc ggttcagcat ctcgcccagc tccccgatcg cacagttgcg
     1561 cacggtcaga gtcaggaaca tccagcgggc atcgggataa tccgccacga tacgcggcag
     1621 ggactggtag aaacgggctt gccacatcag ggagcgcctc cactggcaga caggacaatg
     1681 ccggacacgg cagaaatgcg cctcacgcag cctcagacgc gtttctccgg tttccttgag
     1741 ggtagaccac ccgaaacgca gtaaaccacc acagagggcc atacgcgccc cgtagcgctc
     1801 atattcggct gcaagcaggt aaatccctcc cacgtcatca gaaacgcttc tgtgagcgtc
     1861 ccagggcgca tctgaggggg aatagtccgt gaggttctgg agatcagggt ttttcatgcg
     1921 caccacccga tagtgggcga tggctcatct gacgtgttat cattgccata tcacctgttg
     1981 tgttagtcgt atcaccaatt cgaattccta caggtggtca cacccccgaa cgattgccct
     2041 cgttgcgggg gtcgctttta atgcgaccac tcccgacaga ataactccaa aaccat
//
