LOCUS       CP093078                5463 bp    DNA     circular BCT 05-MAY-2022
DEFINITION  Salmonella enterica strain 2016K-0377 plasmid p2016K-0377_2,
            complete sequence.
ACCESSION   CP093078
VERSION     CP093078.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN05250424
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5463)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5463)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 5463)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: 2016K-0377_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 102x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/04/2022 09:48:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,574
            CDSs (total)                      :: 4,449
            Genes (coding)                    :: 4,341
            CDSs (with protein)               :: 4,341
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 44 of 108
            Pseudo Genes (incomplete)         :: 80 of 108
            Pseudo Genes (internal stop)      :: 23 of 108
            Pseudo Genes (multiple problems)  :: 35 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5463
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2016K-0377"
                     /db_xref="taxon:28901"
                     /plasmid="p2016K-0377_2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(join(5196..5463,1..659))
                     /locus_tag="BAA79_22810"
     CDS             complement(join(5196..5463,1..659))
                     /locus_tag="BAA79_22810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UPX49426.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTPEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIEGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     PTQQKEQLRELRKRWEVKHNEHMRKNGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIMEWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQDRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            836..1234
                     /locus_tag="BAA79_22815"
     CDS             836..1234
                     /locus_tag="BAA79_22815"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPX49427.1"
                     /translation="MRISNIEWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNDLQAQESERKQAVQKRIEGKKQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELCYKKDRILQALKEIKYDLETSPNPDA"
                     /name="hypothetical protein"
     gene            complement(1495..2514)
                     /locus_tag="BAA79_22820"
     CDS             complement(1495..2514)
                     /locus_tag="BAA79_22820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UPX49428.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREDAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKC"
                     /name="replication initiation protein"
     gene            complement(3315..4439)
                     /locus_tag="BAA79_22825"
     CDS             complement(3315..4439)
                     /locus_tag="BAA79_22825"
                     /inference="COORDINATES: protein motif:HMM:NF013211.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_component:
                     GO:0016021 - integral component of membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="colicin-like pore-forming protein"
                     /protein_id="UPX49424.1"
                     /translation="MSGGDGRGPGNTGLGHNGGKPSGNVNGSSGHGGPSSGGGYHYNPG
                     KGPASTVGPDGEVHINITGGMEKDPPGKHHGNGGSGNGHGAGNHNSNSGGNGKTTSIPG
                     WSPDSGKPGRYLPTNKDKLIKGLIQSIDDHSGTYTIHYTGGAVATVTVPNGDVNKMNVH
                     YNIGSGPSSGNKLTRDTIKSFLEFKAENEANAVNDAISKVNDFYKELASKYGDKLEKEA
                     KALADEAKGKKIRNANEAIKAFDRYKDVLNKKFSVSDREAIAKALESLNKDQMAKQLKI
                     FGKAFGVVGEAIQWGGFISGLVKGFRTGDWNEAFISGEKIAVGKVASVMVTVAFSAMAV
                     NPIGILGFAVIMAVTSALITDERLKQLNSFINGI"
                     /name="colicin-like pore-forming protein"
     gene            complement(4660..5193)
                     /locus_tag="BAA79_22830"
     CDS             complement(4660..5193)
                     /locus_tag="BAA79_22830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPX49425.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQNLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVILED
                     KLAEKPVTGKNRKN"
                     /name="hypothetical protein"
     Typing          complement(1740..2514)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.907"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          complement(4..659)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.717"
                     /coverage="99.0"
                     /evalue="1.35e-143"
     Typing          complement(5200..5462)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.864"
                     /coverage="99.0"
                     /evalue="7.829999999999998e-48"
ORIGIN
        1 ccggcagctt caaaacccag atgcacttcg ggacgtcgtt caatgccctg ttctttcagc
       61 gtccgacagt caatgaagcc cctttcaaag ccattttttc tcatatgttc gttgtgcttc
      121 acctcccagc gttttcgcaa ttcccgcaac tgctcttttt gctgagtggg agtcaggctt
      181 cctgaatcct ttttcgcacc tccccgctcg ggatacctgg cgttatagcg ccggaaatac
      241 tgttccggtg tacgttcaat gccatcattc acacgctgac tcatcatgat atgcgcatga
      301 ggctgttcgc ctccctcaat gctcgctttc ggattgtgaa tggcaaaact ccatgcatgc
      361 cgttcgccag cttcctgacg tacaaaatcc tgcaccagtt caaggcgctg ttccggtgtc
      421 agttcacggg gcagcgctat ctccagttcc cgataagtcg aaccgtttgc acgttcaaac
      481 tggtcagccg cctgccagaa atgggaggga ttatctcgcg cccattccgg catgtttccg
      541 tgtgcggaat attccaaatc ttgacggtcg cggtatttct ctttgcgctc gatgtaatcg
      601 gcatggtttg cagcctgtcc cttgccacca aacttaacgc tgaggtgata ggtcgccacg
      661 gtttcagccc tccgcaggag cgcactgttt ctcgacgaag gagagaaaca tataagtgcg
      721 cttccttcta attttacgaa ttagcacgga agataccccc tgcacccgcc gaccgcaagc
      781 gatatactgc acgaccacaa cacaccgcaa aaaaacacca gggagcacca cgaacatgcg
      841 catcagcaac atcgaatggc tgaagaaacg gatcggattc atcaggaagc tcggagaaca
      901 gaccgcacga cagagacaga ttattgacct gctcgacaac gaagcaggac tcacagaaca
      961 ggaacgcaaa ctcctccacg tactggcaac agcggaaaaa aacgacttac aggcacagga
     1021 gagcgaacga aaacaggcgg tccaaaaacg aatcgaggga aaaaaacaac gacgagaacg
     1081 caatcaccga ctctttctcg cggctgggct actgatcgaa gcaggactgg tagacacaaa
     1141 aacaggcgag ctatgctata aaaaagacag gatattacag gcacttaagg aaattaagta
     1201 cgatctggag acatccccaa acccagacgc gtaagtgcct ctatccgtgt tccggttccc
     1261 tggtgcttcc tcgctcattc gctcgctacg ctcggtcatg agactgcggc gagcacgacc
     1321 acctcaatca tgcggtaagc cgcaccattg ctgggctgag aggagaaaac cgccggaaag
     1381 cccgctgctc aaaaagacgc cgaaaggcgc tgttatctga tataggcttg ttcatgtccg
     1441 cgaatttaac atcccattaa caaaaaacgg ggggtagtgt tgcttctttg ttgactaaca
     1501 tttaattatt tgtttcttgg ttagccattc tccagaatta tccatccagc gtcgaatagt
     1561 ccggctgcta acaccaaccg ccactgcaat atcttccgtt gacgctccca agatatacat
     1621 atcaagcgcc ctacgacgtt tgtcgtcgtt agcagtccac cgaacagcgg cgcttttttt
     1681 ccctttgtcc gactgatttt ctgacgaatt ggccttcccg cccttgcgac cgcgtgctgc
     1741 ctgaatttct ggcgtgtgcg tatcagccac atactgtgcg aaagtttccg gcgtgaagtt
     1801 cctgtgcgtg tatttcgcaa tgctcttgcc aatagcccga cattcagcca gtgaaagcgg
     1861 aacgggaagc gatgcattgt acatttcgac acgctggatc accgcttcaa gccactgtga
     1921 gaacgctggc cagccctgac gaatcgccct gtaagcccat ttgcgcgtca tttcgaacag
     1981 gtggcagttt cgccccatcc cgtaatgttt atcgatgcta cgacgctctg aggcgctcaa
     2041 atcgagataa tctgccagtt catcgagggt ataggcgtcc tcgcgccact ccatcacctg
     2101 ccattccagg tggaacggat ttttgcaaat caggccgctg tagttcacat cagcacaaag
     2161 tttctcacac agcgaacgtt caaccgctgc ggcatatttc agcgccttaa ccgaggcatc
     2221 aggcgcggtt ctcacggcga tgttgagtgc gtagagcagg tgagcgtgtc cgttcacagg
     2281 atttttaacg gtgatgttcg gcgcgggggc gttccggtcg ctccagtcaa tcgcagcccc
     2341 ctcgcggtca acgtcaaaaa ccagccagaa ctgcgcatga ggctggttct gctggatgta
     2401 ccgcgcaaga agcgcacgcc ctttgccgga gatgcgaagg ccgaaagcga gatcatccgt
     2461 gtgatagggg cggtggggta aattttcttc gaagtattga agcgcggcgc tcatgtgtta
     2521 cgattccttc caggttatcg accgacctcg cccctgtatt ctcgtgacaa tcttggcgga
     2581 gagacacgaa tttcaggggc gtttgttttt cagtcgctta cactaccccc aacaacaaaa
     2641 cctgtcgagc cttcccgcaa aaccgatcca tttaccataa ctcccgttgt acgtacccct
     2701 taaaacgccc tcagtcgctt tctggcgcaa aaaacgcaaa aagacaagga aacaccaggc
     2761 caaaccagaa aaatgcgtca gaatcacttt cagggcgttg cataactatg cacgaaagcg
     2821 attcgcaaac agtttcgacc gttcaaaagg gcgaacgagt caaaaaagta acttttgtga
     2881 taactacttc tagatttatg gataaagtaa ggcaatatta taaacattta actaacgagg
     2941 attttataaa tgaaaaaaat agatatggaa ttctatttaa ggaattttat ccttgcctta
     3001 tccttttaca ttttatcttt tatcatcgca agtttgaatc taagcccaac aagtatagaa
     3061 ttatttatat ttatacttat atctcttttt ggatcgtcca catacccttt ttgtctatta
     3121 ctaataaata agcaagcacc cttactaaca aaaacaactt ttaacttcgt taactggggt
     3181 tttataatat gcattatatt atcactacct ccatttggat tgatttttac agtctattac
     3241 tttataacca acaaaaagcg atagaaaaac aaaataaagg tcataccata tcaaacggta
     3301 cgaccttttg tttattaaat gccgttaata aagctgttta gttgtttcag cctttcatct
     3361 gtaattaagg cactagtcac tgccataatt actgcaaacc ctaaaatacc aataggattt
     3421 actgccatag cactaaatgc cactgtaacc ataacagatg ctaccttgcc gactgcgatt
     3481 ttttccccgc ttataaaagc ctcattccag tcaccagttc tgaatccttt aactaagcca
     3541 ctgataaatc ccccccactg aatagcctca cctacgacac caaaggcctt accaaaaatt
     3601 tttaactgtt tagccatttg atctttatta agagactcca gtgcttttgc aatcgcttct
     3661 cggtcggata cgctgaattt cttattaagc acatccttgt acctatcaaa ggctttaatc
     3721 gcctcattag cattgcgaat ttttttccct ttagcttcat cggctagtgc cttggcttct
     3781 ttctccaact tatcgccgta ttttgatgct aactctttat aaaagtcatt aactttgctt
     3841 attgcatcat ttacagcatt agcttcattt tctgccttga attctaaaaa gctttttata
     3901 gtatcacgag tcagtttatt acctgatgac ggcccactac cgatattata gtgaacattc
     3961 attttattca catcaccgtt tggtacagtt actgtagcta ctgcaccacc agtataatgg
     4021 atagtgtacg ttccagaatg gtcatctatt gactgaataa gtcccttaat taacttatct
     4081 ttatttgtcg gtaaatatct gccaggtttc ccagagtcag ggctccatcc aggaatagac
     4141 gttgtttttc cattgccgcc tgaattgctg ttatgatttc cagcaccgtg accattacct
     4201 gagccaccat taccgtgatg ttttcctgga ggatcttttt ccataccacc ggtaatgttg
     4261 atatgcacct ccccgtcagg acctacagtg cttgcaggac cttttcccgg attgtaatga
     4321 tacccaccgc cagatgatgg tcctccatgt ccagatgagc cattcacgtt tccactgggt
     4381 ttaccaccgt tatgtccaag ccctgtatta ccagggccac gaccatctcc accactcata
     4441 aaaattccct cttttaatcg ttaaaacaat taattacata gttaatactg tacataaaac
     4501 cactggtttt atgtacagat caaaaagtac tcgccattat tttttctgtc aagtcaggga
     4561 gggatatttt ttggcagttc ggaggaatca ctcatgaaaa cggtgaacgg aacgcgaaat
     4621 cctttcgctg tccgtgaggc gttggacaag cgaagcgcgt cagtttttcc ggttcttacc
     4681 cgtgacaggt ttttccgcca gtttatcttc cagtatcaca actttctgat acaccgccgc
     4741 tgtggcgttg tagttcctgt cgagcattgt tttcattccc catccgagca cacagaacat
     4801 aactagaaaa gccactgaca ccccacccag ccatttccag ctataccctt taagggtgtt
     4861 gtattcctgc acgatattgc tgtgaattgt cgcaatatcc ctgttcaggg catccgcgtt
     4921 tgccttcatg tttgcgactg actcttccag ccgctgaaaa tcctggctga tgcgctcacc
     4981 tatcagccct gctacgtcca gattctgcac ctcatttctg acttcatccc tgacctgttt
     5041 tgccacaccg tcagaaatat cccgatatcc gcgaagtgtt tcccttgcca cagccagaga
     5101 atcagcaaca gctttctgtt gctccattgc ggtatgttgc aaatgctcca ccgataacag
     5161 gagcgtgagt aatttttctt ctgtgctggc catgttcaga atcccataga aaatccacgt
     5221 gacggtgatt taacccgttc aggttcagtt cggtcctgtc tgctcactct gtctctcatg
     5281 tcaaagccat gctcccgcgc aacatcatgt tgcagccttc tgaccagttc atgttgctta
     5341 accggagtgt ccagccattc catgatgtca tgcccgaccg ttcgcgcctg ttcaagatgg
     5401 cgggaatagt ccggttcaga ccgtttttgc atgatgtcat gacgctgggc atcatcaagc
     5461 cgt
//
