LOCUS       CP093075                4633 bp    DNA     circular BCT 05-MAY-2022
DEFINITION  Salmonella enterica strain PNUSAS074905 plasmid pPNUSAS074905_2,
            complete sequence.
ACCESSION   CP093075
VERSION     CP093075.1
DBLINK      BioProject: PRJNA230403
            BioSample: SAMN11618493
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4633)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Twenty-one complete Salmonella enterica serotype Hadar genomes
            collected from patients in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4633)
  AUTHORS   Tarr,C.L., Trees,E., Katz,L.S., Carleton-Romer,H.A., Stroika,S.,
            Kucerova,Z., Roache,K.F., Sabol,A.L., Besser,J. and Gerner-Smidt,P.
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAY-2019) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
REFERENCE   3  (bases 1 to 4633)
  AUTHORS   Webb,H.E., Kim,J.Y., Tagg,K.A., de la Cruz,F., Penil,A., Tolar,B.,
            Ellison,Z., Schwensohn,C., Brandenburg,J., Nichols,M. and
            Folster,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) EDLB, Centers for Disease Control and
            Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: PNUSAS074905_consensus
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 102x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/04/2022 09:49:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,767
            CDSs (total)                      :: 4,642
            Genes (coding)                    :: 4,511
            CDSs (with protein)               :: 4,511
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 49 of 131
            Pseudo Genes (incomplete)         :: 99 of 131
            Pseudo Genes (internal stop)      :: 22 of 131
            Pseudo Genes (multiple problems)  :: 35 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4633
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS074905"
                     /db_xref="taxon:28901"
                     /plasmid="pPNUSAS074905_2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            join(3884..4633,1..90)
                     /locus_tag="FEA18_23810"
     CDS             join(3884..4633,1..90)
                     /locus_tag="FEA18_23810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UPX44178.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(818..1051)
                     /locus_tag="FEA18_23815"
     CDS             complement(818..1051)
                     /locus_tag="FEA18_23815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UPX44179.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1058..1618)
                     /locus_tag="FEA18_23820"
     CDS             complement(1058..1618)
                     /locus_tag="FEA18_23820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UPX44180.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(1647..2087)
                     /locus_tag="FEA18_23825"
                     /pseudo=""
     CDS             complement(1647..2087)
                     /locus_tag="FEA18_23825"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2296..2619)
                     /locus_tag="FEA18_23830"
     CDS             complement(2296..2619)
                     /locus_tag="FEA18_23830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UPX44181.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2682..2873
                     /locus_tag="FEA18_23835"
     CDS             2682..2873
                     /locus_tag="FEA18_23835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UPX44177.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(2962..3046)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          3057..3612
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.907"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(721..2306)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.811"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atggagttac tagaatactt agagttaaga aatgaattat tcaatgacat agaagaagta
       61 atgggtagct atgctcagag ggcaccatag ttcatgatag ccctcgatag tacttactta
      121 tatttttaga gaggtttaag tgtaagtaga gggagtaaca cctggttttt cagcatccac
      181 tccaatgaat gctgacaccg atacgcgata attctcttta tcgtagcaaa atcatcctcc
      241 agattgcggt tgagaatagg ttcatggtgc gcaatacgat tgcgcagttt tctcacggga
      301 cttgttagca gtaatgcttc cccccgggga caaacgacag agatatacaa caaaggcccg
      361 ctgtatagag tacagcgggc ctttgttgtt ttaattcccg caattaaaat actccgtatt
      421 taccataacg tcgcattgcg cgtaccgctt aaacgcgttc agcgcgatca cggcagcaga
      481 caggtaaaaa cagcaacaaa ccacccgaaa aactgccgcg atcgcgcctg gtaaatttta
      541 acctcatgca tagttatgcg cgaaactgaa tgacgatcag tttcgcacgt tccagccgtc
      601 gaacggggca aaatggggag gtttggatat tgttaatgct aatgtacgta cattaacatt
      661 ggcgccatcc gggtagggcg tgccacaaac tggctcgatt tcagggggca ccccggtcac
      721 atccccattg acgggccacg ccagatccgc gcttcgggtt cctgctcttc atgccagcgc
      781 cgggcaagct cctgcgcctg acgctcctgt tcatccctta tctgttgttc gtgataaata
      841 accgactcaa gcggtcgact tgtccggcta atagctgcac ctgctgactc aagttcacga
      901 cacgctcgtt cagtatcgcg ttgttctgtt gcgtaaccgc gtgcatcttc tgcaattctg
      961 cgaaggcgct ctcccactcg ttcagccgcc gcatatagtc ctgttgcaaa tgctctaagg
     1021 cgttcagcaa atgcccttcc agttccgtca tactcgttta ctccctgacc agcctcacgg
     1081 cgttcttgtc gcccaccgtc caggtgtttt cccctttcac cccgtccggc agcaccagaa
     1141 atttcccgtt ctcgccattg acgaacgtca ccccccaggt ttttgcctcg agtttcgcca
     1201 gcgtgttttc ctgctctctg atggtcaaga tatttttcgc aatcctgctt tcctgccact
     1261 gaatcagccc ccagcacccc aggaaaatgc cgcccgtgac gctgagcgcg gtcagcgccg
     1321 gaaacagtac ccgccctttg atcacctgcc agagcaggtt tttctgctgc cgggacagtt
     1381 cggcctctgt ggtgctgagc tgcgtgctca cggtggtgct cagcgtatcc agttgctgtt
     1441 tcacggatgt tgtatgttcg ctgatagcgt ctctgatttt ctgcctgttt aagctcagtg
     1501 ccttgtctac agactcttct agcttcctga actcgctgtt cagcatgttc tcggtagaag
     1561 cggctcgctc tttcagtttc ttctcgaagt ctgttcccat ttgtaaaaga ttgctcatac
     1621 agcgccccct ttagcctgag attccgcccc ccctccgggt cggcaatact gatactgctt
     1681 ctggttgtcc tcaccacctc aaaacctgcc gctgtgagcg cctcagtgac atcctgacgc
     1741 gtttttattg ctccggcacg gtaaagcgcc tcaagacccc gtgtaatcgc ttctgcggcc
     1801 tcctgtttcg cttttggcag attattcggt gtgacaagcg tccgtctgtt ctccggtgcg
     1861 ttcgggtcac gcagcccgta atgatgatta accagcgtct gccaggcatt tatcctcggc
     1921 ctgtccgcac ggtcgtagta cggctggagg cgcttaccgc tctgtagttc catgttcgga
     1981 atgacaaaat tcagttcgag ccgcccctta tcctggtgtt ccacccagag aatgctgtac
     2041 tggtcttttt cgagaccggg cataagaaca cgctcaaagc tcgtcatcac tctttcgcgt
     2101 tcacccggcg gtaactcctt ctccgcgaac gacagaacgc ctgacgtgta tttcttcgaa
     2161 aatggcgtgg catcaatgag ttcccggatt tcttccgggt taccccggag caccgttgcg
     2221 ccttcgcggt tacgctcccg ccccagcagg taatcgaccg ggccacttcc accgcctttc
     2281 cccctggcat gaaatttaac tatcatcccg tcccccctgt tccctgacag cctgccgcaa
     2341 ctggcgcaat tcaccctcga tggccatcag tgcggccacc acatgaaccc ggtcaatcga
     2401 agaccagtgg ccgctgttca ccttccgggc tgtctggttc agattgttcc cgatggcagc
     2461 cagatgccgc agcaatggcg gcgatagtgt cggcagtttt cctgtgcgcg caaccggctc
     2521 ccccagacag acccgccgca tccattctgc cagtcgttta ccctcgcagc gttccagtaa
     2581 ccgggcgtgc tcctcatcgc taacccgtat cgtgagcatc ttctcgcgtt tcatcggtat
     2641 cattccccct aaaaaatccc ctattaagga gccttaagac catgaccaaa caggaaaaaa
     2701 cagcccttaa catggcccgc tttatcagaa gccagacgct gaccctgctg gaaaaactca
     2761 acgagctgga cgcggacgaa caggcagaca tctgcgaatc acttcacgac cacgccgacg
     2821 aactctaccg tagttgcctc gcacgcttcg gcgatgacgg tgaaagcaac tgaaacatgc
     2881 agctcccgga gacgttcaca gcttgcctgt gagcggatgc cgggagcaga caagcccgtc
     2941 agggcgcgtc agcgggtttt agcgggtgtc ggggcgcagc cctgacccag tcacgtagcg
     3001 atagcggagt gtatactggc ttaactatgt ggcatcagtg cggattataa gaaaagtgca
     3061 ccatatgcgg tgtgaaatac cgcacagatg cgtaaggaga aaatgccgca tcaggcgctc
     3121 ttccgcttcc tcgctcactg actcgctacg ctcggtcgtt cggctgcggc gagcggtatc
     3181 agctcactca aagacggtga tgcggttatc cacagaatca ggggataacg ccaaaagaaa
     3241 catgtgagca aaaggccaag aacaggaaga aggccgcgcc gctggcgttt ttccataggc
     3301 tccgcccccc tgacgagcat cacaaaaaca gacgctcaag tcagaggtgg cgaaacccga
     3361 caggactata aagataccag gcgtttcccc ctggaagctc cctcgtgcgc tctcctgttc
     3421 cgaccctgcc gcttaccgga tacctgtccg cctttctccc ttcgggaagc gtggcgcttt
     3481 ctcatagctc acgctgttgg tatctcggcc cggtgtaggt cgttcgctcc aagctgggct
     3541 gtgtgcacga accccccgtt cagcccgacc gctgcgcctt atccggtaac tatcgtcttg
     3601 agtccaaccc ggaaagacac gtaaaaacgc cactggcagc agccattggt aaccgtttag
     3661 aggagttagt cttgaagtta tgcgccggtt aaggctaaac tgaaaggaca gatttggtgg
     3721 ctgtgctcct ccaagccagt taccttggtt caaagagttg ctgctctgag aaccttcgaa
     3781 aagccgcctt gctgggcggt tttttcgttt acggacaaga ctaccttcag gatcgttaga
     3841 tctcaagaca atcatgcata gtgagcatac acaggagccg aacttgctta cactgttcat
     3901 cttttttgtt ttattaatag ctgcatgttt cttttgtttt gctccaccac gaagaggata
     3961 tgacagaaat gagatcattc catacaaaat aaaactatca ataaataaat atcgccttta
     4021 catatactca tcgggaaagg taagacaata ccttttattt ttagttattt tatcactgta
     4081 ctactccata gcggaaccat ttaagtctga gttaataaaa aacatatcat attcactgat
     4141 ggctgcattt atttttgata cagggcttaa ttttagcaag gagaatataa ctaaaggggt
     4201 gatttcaaca aggtggcata atgacctata ttcatcattt gagagaatga aagcaattaa
     4261 taaaatttac tacccatcca acaaagagat aaacacagaa ggtctatcca aagccatcac
     4321 atcatctctt ttcaatgatg acgcgaactc gttcgcaaag agagattttc gcttgatgtg
     4381 ggacttatct tctgaaaaat atctttccta taaagaaata ataataagaa aaggcgataa
     4441 gcttgacgct gtatgcttga gatttataaa tgatgactac aagtttttag ttaatttcaa
     4501 cagagatgaa gaggttttca aatactttcc atctataatg caaccttcac tcaaaacata
     4561 tagagcgtta tcaagactag taaactcaat caaagatcct tctagattta agttcacgac
     4621 agagtcatta gaa
//
