LOCUS       CP089958                5596 bp    DNA     circular BCT 29-DEC-2021
DEFINITION  Klebsiella pneumoniae strain WCHKP115011 plasmid p3_115011, complete
            sequence.
ACCESSION   CP089958
VERSION     CP089958.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN09688127
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5596)
  AUTHORS   Hu,Y., Zhao,Q., Liu,L., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain 115011
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5596)
  AUTHORS   Hu,Y., Zhao,Q., Liu,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2021) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/17/2021 12:19:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.3
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,875
            CDSs (total)                      :: 5,755
            Genes (coding)                    :: 5,572
            CDSs (with protein)               :: 5,572
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 71 of 183
            Pseudo Genes (incomplete)         :: 119 of 183
            Pseudo Genes (internal stop)      :: 35 of 183
            Pseudo Genes (multiple problems)  :: 34 of 183
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5596
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="WCHKP115011"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p3_115011"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018"
     gene            join(5510..5596,1..138)
                     /locus_tag="DVJ19_29330"
     CDS             join(5510..5596,1..138)
                     /locus_tag="DVJ19_29330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000879771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6290 family protein"
                     /protein_id="UHS71461.1"
                     /translation="MLAIRLSDEIESRLDSLAKQTGRTKTFYAREAILAHLEDLEDYYL
                     SAETAARVRRGDEAVHSSEDVRKSLGLDD"
                     /name="DUF6290 family protein"
     gene            122..388
                     /locus_tag="DVJ19_29335"
     CDS             122..388
                     /locus_tag="DVJ19_29335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000262326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="UHS71462.1"
                     /translation="MVWTINYSDRALKSLRKMDKQNARRIVDFMSLRIAVAADPRQSGK
                     PLKGELGEFWRYRVGDYRVLCEIRDDELVILAATIGHRREVYD"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(458..808)
                     /locus_tag="DVJ19_29340"
     CDS             complement(458..808)
                     /locus_tag="DVJ19_29340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UHS71463.1"
                     /translation="MYWLIAFLAFIFPGRSFADGYTAYYRCNGTQEASLTVKDNKLSMV
                     VGLSKFNRQLDTYRFKEKGIEVVMQRAASDDNSEAIMSFIMPDVNNMTLLVKNNGYIIV
                     KTTCWLTKTDKQ"
                     /name="hypothetical protein"
     gene            complement(874..1419)
                     /locus_tag="DVJ19_29345"
     CDS             complement(874..1419)
                     /locus_tag="DVJ19_29345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UHS71464.1"
                     /translation="MFFKRYLTEKEIYKAALPIVRLQGRVNTSLRFLSKYSDVNKNGLI
                     ALHLNLLHFISYNIHGVESLKITQAGINKAVQQSPHADEIKNIAQAIGRKGPEYIEGLI
                     RNPWGKKNDNPLIFIMSIEESIKETLNSGYMLYRVAPITEGEAAAFMDVLKQLLLFEDN
                     FRLFGRDLVYKIEKLKIR"
                     /name="hypothetical protein"
     gene            complement(1445..1771)
                     /locus_tag="DVJ19_29350"
     CDS             complement(1445..1771)
                     /locus_tag="DVJ19_29350"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UHS71465.1"
                     /translation="MRERTNIMLDIGLKQSLQRLSNKTKMSLSDLINQRLSGSLSVEER
                     IGEKPEWMRNLDPYLANHFSNIELPLPSPLKEYQEKMDEIDSIINDMMVLKEYFRAKFY
                     DEIK"
                     /name="hypothetical protein"
     gene            2927..3103
                     /locus_tag="DVJ19_29355"
     CDS             2927..3103
                     /locus_tag="DVJ19_29355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UHS71457.1"
                     /translation="MQKPKKKPLVVKKRSWHPAVMANLMRQAQEEDYRREQMAELERSA
                     RSHFADIGGEDGG"
                     /name="hypothetical protein"
     gene            3093..3437
                     /locus_tag="DVJ19_29360"
     CDS             3093..3437
                     /locus_tag="DVJ19_29360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UHS71458.1"
                     /translation="MAVKRTRFLGIRVTDGEYQQLLERCNGRQLAVWMRETCLDTRPAR
                     SLRLPSIDPVLLRQLAGMGNNLNQIARKINGGQWSGADRVQVVAALMAIDAELERLRHA
                     VLEKGADDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3646..4080
                     /locus_tag="DVJ19_29365"
                     /pseudo=""
     CDS             3646..4080
                     /locus_tag="DVJ19_29365"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            4115..4624
                     /locus_tag="DVJ19_29370"
     CDS             4115..4624
                     /locus_tag="DVJ19_29370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UHS71459.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESG
                     KRISAAIRAHEQGMSAAMQSNRLSVMRMVGRTWLTITMVSGLLFASLSGVLWYQGSLIA
                     SNLAEIDRQNAALSKLNAKTWGVTYLEDSNGRFLVLPKGTAVDRTQSWTVGNGRSKQNA
                     LRLVKE"
                     /name="MbeB family mobilization protein"
     gene            4631..4843
                     /locus_tag="DVJ19_29375"
     CDS             4631..4843
                     /locus_tag="DVJ19_29375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UHS71460.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFGEWRKMSGLMQRENA
                     ALSERVTRLSQQVERLSGQLQRLSR"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          2762..2841
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.361"
                     /coverage="97.0"
                     /evalue="1.1100000000000001e-21"
     Typing          complement(2179..2576)
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.526"
                     /coverage="91.0"
                     /evalue="3.03e-139"
     Typing          3428..4959
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.804"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cgggaagcaa tactggcgca tctggaagac ctggaggatt attatctttc agcagaaact
       61 gctgcacgcg ttcgccgtgg tgatgaagca gtgcattcgt ctgaagacgt gaggaagtca
      121 cttggtctgg acgattaact attccgatcg ggcgctcaaa tcgttacgca agatggacaa
      181 acagaacgca cgacggattg tggattttat gagtttacgc attgcagttg ctgccgatcc
      241 tcgccagtca gggaagccgc tcaaaggtga gctgggcgag ttctggcgct atcgggtggg
      301 agattatcgc gttctgtgtg agatccgaga tgacgagctt gttatccttg ccgccacgat
      361 tggacatcgc cgcgaagttt acgactgaag cccgctatgc gggctttttt gatgccgaca
      421 acaggtatta tggtaaatac tcgactaact acgtgttcta ctgtttgtcg gttttagtta
      481 accagcaggt tgtcttaacg ataatgtagc cgttattttt aactaataag gtcatattgt
      541 taacgtcagg cataataaaa gacattatgg cctcagagtt atcatcagaa gcagctctct
      601 gcattactac ttcgattccc ttttctttga atctataagt atccagttgc ctattaaact
      661 tagaaagacc tacaaccata cttagtttgt tatctttaac agtaagagat gcttcctgag
      721 taccattaca tcggtagtaa gcggtgtaac cgtcagcaaa agatcgaccg gggaatataa
      781 atgctaggaa cgcaattaac caatacatag ttgagaatct tggtattaca catttcacta
      841 tcctctcttt catttttcgt tcaccatact ttgttatctg atttttaatt tttctatttt
      901 ataaaccaag tctctaccaa aaaggcgaaa attatcctca aataataata attgtttaag
      961 aacatccatg aaagcagctg cttcaccctc agttatggga gctactctat ataacatata
     1021 acctgagtta agggtttctt ttatactttc ttcaatgctc attataaata ttagtggatt
     1081 atcatttttc ttcccccatg ggtttctaat taatccttcg atgtactcag gtcctttgcg
     1141 tcctattgcc tgcgcaatat tttttatttc atctgcgtga gggctttgtt gtacagcttt
     1201 gtttatgcct gcttgagtga ttttcagaga ctctacaccg tgtatgttgt atgagataaa
     1261 atgtaataaa ttaagatgca atgcaattaa tccatttttg tttacatctg agtatttgga
     1321 taaaaaacgt aatgaagtgt taactctccc ttgaagccta acaattggga gtgctgcctt
     1381 gtatatttcc ttctccgtta aataccgttt aaaaaacata attctccgcc tccgtatagc
     1441 gtgcctattt tatttcgtcg taaaacttag ctctgaaata ttcctttaga accatcatgt
     1501 cattaataat tgaatctatc tcatccattt tttcttggta ttcttttaat ggtgaaggga
     1561 gcggtaactc aatatttgaa aagtgattgg cgagataggg atcaaggttt ctcatccatt
     1621 caggcttttc gccaatgcgt tcttcaactg aaagtgaacc tgataatctc tggttaataa
     1681 gatcacttag actcattttg gttttattcg aaagccgttg taaggattgc tttaatccta
     1741 tatctagcat gatatttgtt ctttctctca ttaccccccc ttgctattgc gttttttgtt
     1801 gcgcacaaag ctaccattgc gcattaagaa acgcaataaa aaaggaggga gggagtggtt
     1861 tgtacatgat gtgcagtgcg ctgagggcat cagtggcggg tgtttttccg tgggatggat
     1921 ggagctccgg ggataacaga actgacgatc atttaaagga tcttcttgag atcctttttt
     1981 tctgcgcgta atctcttgca ctgtaaacga aaaaaccgcc tggggaggcg gtttgatcga
     2041 aggttaagtc agttggggaa ctgcttaacc gggtaactgg gtatacgaga ccgcagatac
     2101 caaaactgtt ctttcagtgt agccgcagtt aggcacccac ttcaagacct ctcaatatct
     2161 ctctcgtata tatccagtta ccaatggctg ctgccagtgg cgtttttgcg tgtccgtccg
     2221 ggttggactc aagatgatag ttaccggaaa gggcgcagca gtcgggctga acggggggtt
     2281 cgtgcataca gcccagcttg gagcgaacga cctaaaccga gccgagatac cagcagcgtg
     2341 agctatgaga aagcgccacg cttcccgaaa gggaaaaagg cggaacaggt atccggtaaa
     2401 cggcagggtc ggaacaggag agcgcacgag ggagccgccg gagagaaatc accggcatct
     2461 ttaagtcctg tcgggtttcg tcctcctctg acttgagcgt ccatttctgt gatgctcgtc
     2521 aggggaggcg gagcctatgg aaaaacggca acgccgcatc cttttctccg gccctttctg
     2581 atttgagcgc ctttgcttta tcccgttatc cgtgagtcgg tcacgcccgc cgcagccgaa
     2641 cggcaggagc gcagctaccg agtgagcgag gaggcgtcat ttcatctgtc cgtgcatggt
     2701 attgcggacg ctcctgagcc acatatcaca cctgccacat gaggcacttt catgaatcgt
     2761 gctctcatgc caacatagta agccagtata cacagcgtaa acgctgtgac tggttcaggg
     2821 ctgcgccccg aaacccgcta acaccactga cgcgctggcg cttgtccaac gccggagcga
     2881 cccggaaaac ttttccgtgc cgtccggcgt ttgcgaagga gggataatgc agaagccgaa
     2941 gaagaagccg ctcgtcgtaa aaaaaagatc ctggcatccg gcagtgatgg caaatctgat
     3001 gcgtcaggca caggaggaag attaccgccg ggagcagatg gcagagcttg agcgttcagc
     3061 ccggtcacat tttgcggata tcggaggaga ggatggcggt taagcgtacc cgttttttag
     3121 gtatccgggt gaccgatggg gagtaccagc agctgctgga gcgctgcaat ggaaggcaac
     3181 tggcggtgtg gatgcgggaa acctgtctcg atacgcgccc ggcgcggtcg ttgcggctgc
     3241 cgtccatcga tccggttttg ctgcgccagc ttgccgggat ggggaacaac ctcaaccaga
     3301 tcgcccggaa aattaacggc ggccagtggt caggcgctga ccgggttcag gtggtggccg
     3361 cgctgatggc cattgatgcc gaactcgagc ggctgcggca tgccgtgctg gaaaaggggg
     3421 cagacgatga tcgttaagtt tcatccgcga gggcgaggcg gcggtgccgg gccggtggat
     3481 tatctgctgg ggaaagaccg ccagcgcgac ggggccatcg tcctgcaggg aaagccggag
     3541 gaggtccggg agcttatcga cgcctcgccc tacgccaaaa agtacacctc cggcgtcctg
     3601 tcttttgctg aacaggattt accgcccggc cagcgtgaaa agctgatggc gagcttcgag
     3661 cgggttctga tgcccggact cgataaagac cagtacagcg tgctgtgggt tgaacaccgg
     3721 gacaaggggc ggctggaact gaattttctg gtaccgaaca cggaactgct gaccggcagg
     3781 cgtctccagc cgtactacga ccgggcagac cgtccgcgca tcgatgcgtg gcagaccgtg
     3841 gtgaacgggc gactggggct gcacgacccg aacgcaccgg agaaccggcg cgcgctggtg
     3901 acgccatctt cgttacccaa aacgaagcag gaagccgcag aggctattac gcggggctta
     3961 ctggccctcg cctcgtcagg ggagcttaaa acgcgtcagg acgtcactga ggcgctggaa
     4021 agcgcaggtt ttgaggtcgt gcgcaccaca aagagcagca tcagcattgc cgacccggac
     4081 ggagggcgaa acatccgact taagggagcc atctatgaac agtcttttaa cgctggcgaa
     4141 ggacttagag cagaaatcga aagcgcagca gcagagtacc ggcgaaatgc tgaaagccgc
     4201 attcagcgag cacgagaagt ctgtcagagc ggaactgagc gaaagcggga agagaatcag
     4261 cgccgccatc cgcgcccacg agcagggtat gagcgcggcc atgcagtcga accgcctgag
     4321 cgtgatgcgt atggtcgggc ggacatggct gaccatcacg atggtgtcag gactgctgtt
     4381 cgccagcctg agcggggtgt tgtggtatca ggggagcttg atagcgtcaa atctggccga
     4441 aatcgaccgg cagaacgcag cgctgtcgaa gctgaacgcg aagacctggg gcgtgacgta
     4501 cctggaagac agcaacggac gttttctggt gctgccgaag gggacggccg tagacaggac
     4561 gcagagctgg acggtcggga acgggcggtc gaagcagaac gcgctgagac tggtgaagga
     4621 gtaagtgccg atgaccgagc tggaaaaaca gttgctgagc gcattagagc agctacagca
     4681 ggactactcg aaaaggctgg acgagtggga gagcgccttc ggggaatggc ggaaaatgtc
     4741 agggcttatg caacgggaga acgcggcgct gagcgagcgc gtgacgcgct tgagtcagca
     4801 ggtggaacgc ttgagcgggc aactgcagcg tttgagccgg tagtgcagcg tcatgagatg
     4861 gccgtggccg cagaacgggc gcacgagcaa cggcagcacg aaaaggaact gacggaagcg
     4921 cgttcccggc agcgaagcta tgacggtccg tcgctgggct gaaatgcagg aaaacagggt
     4981 tctcatcggg catttacgct gaaaccggat gtcattcacc tggctgcatg gctatgcagc
     5041 caggtaaaat ttatctgtcg cgaacggggc ggtttatcgg gtggtttgtt gccggtttta
     5101 cctgactgcc accccgttcg cggcgaaccc gtccggggcg gtgcgggcaa cgggtgttat
     5161 gtttaatcag cgtgaacggc agatacaaaa aagccccgga gggcttttaa ctactgactt
     5221 atttttttga agatttgctg ggtttcaatt tgtcagtatt tcccggcgtt tttttattgt
     5281 cacgctggcg tttatcaggt tcccctgttg aatcggcaat tcgtttcgga cccggcttaa
     5341 gacccataat cgttatcctt tcaatagtta agaggaaagc cctcaagcta gatatattga
     5401 ccgcgttacg gattatcaag aggggctaac aagattattt tttgttcttt taggttgatt
     5461 gtggtactgt tgatatacat gtatagcaaa tggtgttcgg gaggtttata tgcttgctat
     5521 ccggttatct gatgagattg agtcccgtct ggactcgctg gcgaagcaaa ccggcagaac
     5581 aaagacgttt tatgcg
//
