LOCUS       CP082683                4089 bp    DNA     circular BCT 09-SEP-2021
DEFINITION  Salmonella enterica subsp. enterica serovar Muenchen strain CVM
            N18S0476 plasmid pN18S0476, complete sequence.
ACCESSION   CP082683
VERSION     CP082683.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN11968006
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Muenchen
  ORGANISM  Salmonella enterica subsp. enterica serovar Muenchen
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4089)
  AUTHORS   Li,C., Tyson,G., Hsu,C.-H., Harrison,L., Strain,E., Tran,T.-T.,
            Tillman,G., Dessai,U., McDermott,P. and Zhao,S.
  TITLE     Long-read sequencing reveals evolution and acquisition of
            antimicrobial resistance and virulence genes in Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4089)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 4089)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 314x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/31/2021 14:04:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,730
            CDSs (total)                      :: 4,610
            Genes (coding)                    :: 4,528
            CDSs (with protein)               :: 4,528
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 36 of 82
            Pseudo Genes (incomplete)         :: 51 of 82
            Pseudo Genes (internal stop)      :: 15 of 82
            Pseudo Genes (multiple problems)  :: 18 of 82
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4089
                     /organism="Salmonella enterica subsp. enterica serovar
                     Muenchen"
                     /mol_type="genomic DNA"
                     /strain="CVM N18S0476"
                     /serovar="Muenchen"
                     /isolation_source="ground turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:596"
                     /plasmid="pN18S0476"
                     /geo_loc_name="USA:IA"
                     /collection_date="2018"
                     /collected_by="FDA"
     gene            complement(join(3818..4089,1..19))
                     /locus_tag="FH379_000005"
     CDS             complement(join(3818..4089,1..19))
                     /locus_tag="FH379_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001514113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UAH65055.1"
                     /translation="MSRTLEQKIAEAEARLQRLKAKSRSLDTAQKVVVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVSRIQPLIDELNALPKPVPKGVSKNGQQA"
                     /name="mobilization protein"
     gene            197..2335
                     /locus_tag="FH379_000010"
                     /pseudo=""
     CDS             197..2335
                     /locus_tag="FH379_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /name="MobA/MobL family protein"
     gene            complement(2585..3286)
                     /locus_tag="FH379_000015"
     CDS             complement(2585..3286)
                     /locus_tag="FH379_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UAH65054.1"
                     /translation="MVDLIAYKSNALVEASYKLTLQEQRFLLLCISRLQSGVDAPPPEL
                     QKTMTITAVEFFNSFPDMGRNHAEEKLQEAIDRLWDRSIILKDGEKREEFRWIQYRAQY
                     LKGEAKVQITFADAVMPYLTQLKGQFTKVVIKNISNLSKSYSIRIYEILQQFRNTGERM
                     ISLDDFRSMLQLEDKYKDFKTLNRALIKPAVAELNQKSDLAVTVETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     Typing          complement(21..196)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.382"
                     /coverage="100.0"
                     /evalue="9.6e-71"
     Typing          197..555
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.222"
                     /coverage="100.0"
                     /evalue="3.97e-172"
     Typing          111..2332
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.786"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gttcgagtgt tctgctcatg atgtaactcc gtgcgcggtg aaaaatcgca ttttagctcg
       61 tcactggtag tttaaaaact gagctggcat aatgcgcaga aatcacgaag tgcgcactta
      121 tacaatctca ccttcggttc gattgtgtgc gccctgcggg gctgaaagaa aactgcaaaa
      181 aggcattacg gcagaaatgg cgatttatca tctcagcatg aaaatcatct ccagaagcaa
      241 cggctacagc gccgttgctt ctgctgccta tcgttccggt tcactaatgc ttgatgagcg
      301 taccggactg actcacgact acacccgcaa aagcggtgtg gctgaggctg tgattctgtc
      361 ccccgccacc gcccctgcct ggtgtacgaa ccgtaccgaa ctctggaatg ccgttgagaa
      421 ggccgaacgt cggaagaact cacaacttgc gcgggaaatt gaactcgcca tcccccgtga
      481 actgccgcag gatgccgcac gggaaaccgt tctcgccttt gtcagagaaa actttgtcag
      541 tcagggcatg attgctgatg tggcgttcca tcacatggat aaaacaaatc cccatgcgca
      601 catcatgctg accacgaggg ctgtcggacc tgcggggttc ggtggaaagg tcagggactg
      661 aacgaccgga cacatgccga gacgtggcgc aaacagggca ctggcgaacg ccggttatca
      721 ggaagagata gaccatcgtt catacgagcg acaggggctt gagaaaacgc ctggtattca
      781 cctcggaaag tctgcctgtg cgatggaaac acgcggtatc gaaacagaac gcggcgaaca
      841 gaatcgtctg attaacaggc ttagcctgga aatacagatt ttccgtaccg aactcaggaa
      901 cagcgggctg acagagcctg cccgccgtgt ggctgacctt ctgaatattg agcttcctga
      961 caacgcaact tcgtacacac tacgtgacat catcgaagcg ttgccgaagg acagtaacgc
     1021 ggcatggaaa ctcaccagta atgccatgtc gatgatgaca gatatgcagg cgacgcgcag
     1081 acgctgggaa gagctgaaca ccgaacgaaa ggaagcgatg agccatgctg ccagcctgaa
     1141 aaaatcatcg ccgttttcgt ccggtttttc ccgtattccc ctgatgcaat gggctgcacc
     1201 ggaataccgt agtgagcagg gaaaaattca gtctctgagc cagcaaatgg aaaaattgcg
     1261 acagcattac cggaaggtgg agaaacagga cattcccgcg agtcagacgg aatttgaaac
     1321 acagtggcag cagtgggggg catccggcct tgcagctctc agagcccagt tgcttaaacg
     1381 tgaagaggaa ttgcgccgga aggagctgga ggatacagaa cgtagtcgcg cggagcgacg
     1441 agcggagcag ctcaggaaaa atgacaatgc cgttatggat tcaggggtac tgagagcagt
     1501 cgttacgggg tatggcgagg cccccatgcc tggtaacggg gaaatgacca gttaccttct
     1561 gcttcacaac cggaacggag aatatacgct ctgggggaac gagctggaga aataccgcac
     1621 cagaatcttt gagcgtgttg atttaatgcg tgacaggagt ggttatatct gtgaccgaag
     1681 cgaaatcggt caacatccac cattgcaacg tgtttattcc tctgcgacct ttgagcaact
     1741 gctgacgcag gtttgccaga catggccaca acatacccgc aatctccgcc agccgaagac
     1801 atggccggag tttttctgtc ttggagaaga ccgccagcca gccatgccat cactggcagc
     1861 aaggaaggtg gattttacgc agggacgtct gccaccgacg ctgatgccgg taatgagttc
     1921 tgtcgaccgg gaaacccgcc agcttcagct tttgctggtc atgggcgtgg atgactctct
     1981 gggcggcgtt gtccggctta atggcacgct gtatcccgcg tttgccgttc cctcagccga
     2041 taacaggcat ctggtcatca gtgcgctgac ggacaagggg ttacggtatg cagggtatgg
     2101 tgttgccgtc aatcacgatg cagacagcca catatcacct gcaccggaac ttatggagtt
     2161 tcatctgaaa acccgtgagg caccgctttt tgctgccgtc aatacaccag aaaaacagcc
     2221 ggatcatctg ttccgctcgc tgggttttaa tcgtacctgg gacgaatggc ggcgcgagga
     2281 agatgcacga acacacgcca ccgagaggag gcacgatcgc ggttggtcac agtgaatgtg
     2341 cacaatattt tgttttgttt aacatcatgt tatgttcatg tgacgttcac atgacaggga
     2401 tgaacgtcaa taagcacaca caacaaacta gataatctcc gcatagtttc ttccccccgc
     2461 atatggggga tttttttagc tcgtgagagc gattctgacg atgtttttgt gattcgtagt
     2521 accatcgcat accttacaca aaaaaaacgc gtcagcgcgc gttttagatg ccttagaatc
     2581 gattttagat cgtcatcttg atctgtttgt cttccttgaa gcgaaaatgc agggctacga
     2641 cagtgcgccc cttcttgatt gtctcaaccg ttacggccag atcgcttttt tgattcagtt
     2701 ccgccactgc cggttttatg agggctctat ttaacgtctt gaaatcttta tatttatctt
     2761 ccagttgtag catgctgcgg aaatcatcta gagaaatcat ccgctcccct gtgttacgga
     2821 actgttggag gatttcgtat attctgatgc tataactctt tgataaatta gatatgtttt
     2881 taattacaac ttttgtgaat tgccctttta attgcgttaa gtacggcatt acagcatctg
     2941 cgaaagttat ttgaactttt gcttcgcctt tcaggtactg cgcccgatac tggatccaac
     3001 ggaactcctc gcgtttttca ccatccttaa gaatgatcga cctgtcccac agacgatcga
     3061 tcgcttcctg taacttttct tcggcatggt ttcttcccat gtcaggaaat gaattaaaaa
     3121 actccacagc cgtaatagtc atggtctttt gtaattcagg tggaggagca tcaacacctg
     3181 actgtaatcg actaatgcac agcaacagga aacgctgctc ctgtaacgtg agcttgtagc
     3241 tggcttcgac taaggcattg gatttgtaag ctatcaaatc aaccattgag caccctcacc
     3301 taaagtaaac taaaaaaaaa ctagttcacc ccatcaattg gtgcaatcat ttttttttaa
     3361 ttcaccattt tctgtggata accacccccg aaatgttcac ctttaccccc gaaatgttca
     3421 cctaaccacc cccgaaatgt tcacctttac ccccgaaatg ttcacctata gcaatctaat
     3481 cccttgaatt ccataagaaa tttcggtccg aaaacaagta ttaaaaacaa gatcttaaaa
     3541 acaagatcta aaaacttaac ggcgagcctg tggaaaactc ggggtgcgca aaacaaaaac
     3601 ccatgaaaaa cagtaagtta caaaaaagca gaacagcaga cactggcaaa acgctgttca
     3661 accctgtgga aaaccagtat tcatgcgggt tgaacggcta tcaccaactg agcatcggcg
     3721 cgtaagtgcc ctgttttggt gcagcagctt ttccgcttcc tcgcccactc gctcgctaac
     3781 gctcggtcgc tggggctgcg gcgagcggat ggtgcattca cgcctgctgg ccgttttttg
     3841 acacgccttt ggggacgggt tttggcaacg cgttcagttc gtcaatcaac ggctgtatcc
     3901 tgctcacatc agcctgccgt gtcacctctg ccttcaggaa ctggagtaac caggcgcgca
     3961 attgcacctc ctccggcttt ctgacctttg ccagcaatgc agcacctaca acgaccttct
     4021 gcgctgtgtc caggctccgg ctctttgcct tcagacgctg caatctggct tcagcttcgg
     4081 caattttct
//
