LOCUS       CP082634                1474 bp    DNA     circular BCT 14-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain CVM
            N17S1352 plasmid pN17S1352-6, complete sequence.
ACCESSION   CP082634
VERSION     CP082634.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN10133040
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1474)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1474)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2018) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 1474)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 302x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/01/2021 17:44:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,121
            CDSs (total)                      :: 4,999
            Genes (coding)                    :: 4,886
            CDSs (with protein)               :: 4,886
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 43 of 113
            Pseudo Genes (incomplete)         :: 74 of 113
            Pseudo Genes (internal stop)      :: 21 of 113
            Pseudo Genes (multiple problems)  :: 21 of 113
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="CVM N17S1352"
                     /serovar="Heidelberg"
                     /isolation_source="ground turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="pN17S1352-6"
                     /geo_loc_name="USA:MD"
                     /collection_date="2017"
                     /collected_by="FDA"
     gene            join(1309..1474,1..704)
                     /locus_tag="D7G91_25575"
     CDS             join(1309..1474,1..704)
                     /locus_tag="D7G91_25575"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UAH18056.1"
                     /translation="MLLKKDRFGKLTSETLNAIAQTGVREAIADLPCLYRNNSIEITDK
                     TPPNPLSPAAFELSTNLKKSASALAWNVQHFVDTYGLSNVGFLTLTFRDHVTDPKEAQR
                     RFNSLKSNVLASRYRAYIRVMEPMKSGRIHYHLLVALDSDIRTGFDFFAVRDQDYSSAN
                     KAIRAEWAFWRKTAPKYRFGRTELMPVRSNSEGIGRYVGKYISKGIESRTEQFKGTRLV
                     EYSRKAKIASTRFQFVTEGSAEWRRKLAIFVHYIADNTGCEPSFEGLRRVLGARWSYHW
                     REFILSLT"
                     /name="hypothetical protein"
ORIGIN
        1 ttgagctttc tacaaacctc aaaaaatccg cctcggctct ggcatggaat gtacagcatt
       61 tcgtcgacac ctacggcctt tcaaatgttg gttttttaac cctgaccttt cgtgaccacg
      121 ttaccgatcc caaagaagca caacgccgtt ttaattctct taaaagcaat gttttggcct
      181 cgcgttaccg ggcttatatc cgcgtcatgg agcctatgaa gtccggccgt atccactatc
      241 atcttcttgt tgctctcgat tctgacatta gaaccggctt tgatttcttt gctgtccgtg
      301 accaggacta ttcatccgca aacaaggcta ttcgggctga gtgggctttc tggcgtaaga
      361 ctgcgccaaa atatcgcttt ggtcgcactg aattgatgcc cgttcggtct aattctgagg
      421 gtattgggcg ttatgtgggg aaatacattt ctaagggcat agaatcgcgt acagagcaat
      481 ttaaagggac taggctggtt gagtattccc gcaaggctaa aatcgcttct acgcgcttcc
      541 agttcgttac agagggttct gctgagtggc ggcgtaagtt ggctatcttc gttcattaca
      601 tcgctgacaa tacgggctgt gagccttctt ttgagggtct gcgccgtgtt ttaggtgcgc
      661 gctggtctta tcactggcgc gaatttattt tatcactcac ttaacacctg tacttttgtc
      721 tcaaacctgc aatcccgcct cacgctgcca gattaaaatc tgacagccct caccgttgct
      781 gaattgtcaa ccgctaaggc ggggggcccc tctggggttc cgctttagtg gttgtacaac
      841 actacccccc cgacactttc gataggtgat ggatcacatg gtgagccatc gccctgtaaa
      901 gccatctttt gactcggctg ccgtgggtca ctgtggggta ggtgcggaag ccctgcccca
      961 cagggaacgc ggtgccgtct ctacgcatgg ttaacgcgga gtgccttagt tctgaaccaa
     1021 ttctatctat gtgctgggag ggggtgacgt acaccgctaa tgctaagtga gtgtttgagt
     1081 gcctgagtgg ttgaatgtag cagcgggggc tggcctatcg cttcgctgtt ttttgcggta
     1141 ttctttttgg cggtcatgta ttgaacatac ataattttta gcggaagttg cgcaccgcac
     1201 cttactcata cgatcaaaat agaaacccct gcaagagcgg caaactcttc aggggcgtga
     1261 ccacctaaca aaattcgttt ctacacaagc ccattaggtg atggattaat gctacttaaa
     1321 aaagatcgct tcggcaaact tacttctgaa actcttaacg ccattgctca aactggcgtc
     1381 agggaggcga tagccgacct tccttgtcta tatagaaaca actcaatcga gattacggat
     1441 aaaacacctc ccaatccctt gtcacctgcg gctt
//
