LOCUS       CP082633                4593 bp    DNA     circular BCT 14-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain CVM
            N17S1352 plasmid pN17S1352-4, complete sequence.
ACCESSION   CP082633
VERSION     CP082633.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN10133040
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4593)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2018) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 4593)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 302x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/01/2021 17:44:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,121
            CDSs (total)                      :: 4,999
            Genes (coding)                    :: 4,886
            CDSs (with protein)               :: 4,886
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 43 of 113
            Pseudo Genes (incomplete)         :: 74 of 113
            Pseudo Genes (internal stop)      :: 21 of 113
            Pseudo Genes (multiple problems)  :: 21 of 113
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="CVM N17S1352"
                     /serovar="Heidelberg"
                     /isolation_source="ground turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="pN17S1352-4"
                     /geo_loc_name="USA:MD"
                     /collection_date="2017"
                     /collected_by="FDA"
     gene            complement(join(4419..4593,1..59))
                     /locus_tag="D7G91_25545"
     CDS             complement(join(4419..4593,1..59))
                     /locus_tag="D7G91_25545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UAH18052.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(66..626)
                     /locus_tag="D7G91_25550"
     CDS             complement(66..626)
                     /locus_tag="D7G91_25550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UAH18053.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(601..1314)
                     /locus_tag="D7G91_25555"
                     /pseudo=""
     CDS             complement(601..1314)
                     /locus_tag="D7G91_25555"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1304..1627)
                     /locus_tag="D7G91_25560"
     CDS             complement(1304..1627)
                     /locus_tag="D7G91_25560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UAH18055.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1690..1881
                     /locus_tag="D7G91_25565"
     CDS             1690..1881
                     /locus_tag="D7G91_25565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UAH18054.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2892..3731
                     /locus_tag="D7G91_25570"
     CDS             2892..3731
                     /locus_tag="D7G91_25570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UAH18051.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     Typing          complement(1970..2054)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          2065..2620
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.907"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(2..1314)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atatagtcct gttgcaaatg ctctaaggcg ttcagcaaat gcccttccag ttccgtcata
       61 ctcgtttact ccctgaccag cctcacggcg ttcttgtcgc ccaccgtcca ggtgttttcc
      121 cctttcaccc cgtccggcag caccagaaat ttcccgttct cgccattgac gaacgtcacc
      181 ccccaggttt ttgcctcgag tttcgccagc gtgttttcct gctctctgat ggtcaagata
      241 tttttcgcaa tcctgctttc ctgccactga atcagccccc agcaccccag gaaaatgccg
      301 cccgtgacgc tgagcgcggt cagcgccgga aacagtaccc gccctttgat cacctgccag
      361 agcaggtttt tctgctgccg ggacagttcg gcctctgtgg tgctgagctg cgtgctcacg
      421 gtggtgctca gcgtatccag ttgctgtttc acggatgttg tatgttcgct gatagcgtct
      481 ctgattttct gcctgtttaa gctcagtgcc ttgtctacag actcttctag cttcctgaac
      541 tcgctgttca gcatgttctc ggtagaagcg gctcgctctt tcagtttctt ctcgaagtcc
      601 gttcccattt gtaaaagatt gctcatacag cgcccccttt agcctgagat tccgcccccc
      661 ctccgggtcg gcaatactga tactgcttct ggttgtcctc accacctcaa aacctgccgc
      721 tgtgagcgcc tcagtgacat cctgacgcgt ttttattgct ccggcacggt aaagcgcctc
      781 aagaccccgt gtaatcgctt ctgcggcctc ctgtttcgct tttggcagat tattcggtgt
      841 gacaagcgtc cgtctgttct ccggtgcgtt cgggtcacgc agcccgtaat gatgattaac
      901 cagcgtctgc caggcattta tcctcggcct gtccgcacgg tcgtagtacg gctggaggcg
      961 cttaccgctc tgtagttcca tgttcggaat gacaaaattc agttcgagcc gccccttatc
     1021 ctggtgttcc acccagagaa tgctgtactg gtctttttcg agaccgggca taagaacacg
     1081 ctcaaagctc gtcatcactc tttcgcgttc acccggcggt aactccttct ccgcgaacga
     1141 cagaacgcct gacgtgtatt tcttcgaaaa tggcgtggca tcaatgagtt cccggatttc
     1201 ttccgggtta ccccggagca ccgttgcgcc ttcgcggtta cgctcccgcc ccagcaggta
     1261 atcgaccggg ccacttccac cgcctttccc cctggcatga aatttaacta tcatcccgtc
     1321 ccccctgttc cctgacagcc tgccgcaact ggcgcaattc accctcgatg gccatcagag
     1381 cggccaccac atgaacccgg tcaatcgaag accagtggcc gctgttcacc ttccgggctg
     1441 tctggttcag attgttcccg atggcagcca gatgccgcag caatggcggc gatagtgtcg
     1501 gcagttttcc tgtgcgcgca accggctccc ccagacagac ccgccgcatc cattctgcca
     1561 gtcgtttacc ctcgcagcgt tccagtaacc gggcgtgctc ctcatcgcta acccgtatcg
     1621 tgagcatctt ctcgcgtttc atcggtatca ttccccctaa aaaatcccct attaaggagc
     1681 cttaagacca tgaccaaaca ggaaaaaaca gcccttaaca tggcccgctt tatcagaagc
     1741 cagacgctga ccctgctgga aaaactcaac gagctggacg cggacgaaca ggcagacatc
     1801 tgcgaatcac ttcacgacca cgccgacgaa ctctaccgta gttgcctcgc acgcttcggc
     1861 gatgacggtg aaagcaactg aaacatgcag ctcccggaga cgttcacagc ttgcctgtga
     1921 gcggatgccg ggagcagaca agcccgtcag ggcgcgtcag cgggttttag cgggtgtcgg
     1981 ggcgcagccc tgacccagtc acgtagcgat agcggagtgt atactggctt aactatgtgg
     2041 catcagtgcg gattataaga aaagtgcacc atatgcggtg tgaaataccg cacagatgcg
     2101 taaggagaaa atgccgcatc aggcgctctt ccgcttcctc gctcactgac tcgctacgct
     2161 cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa gacggtgatg cggttatcca
     2221 cagaatcagg ggataacgcc aaaagaaaca tgtgagcaaa aggccaggaa caggaagaag
     2281 gccgcgccgc tggcgttttt ccataggctc cgcccccctg acgagcatca caaaaacaga
     2341 tgctcaagtc agaggtggcg aaacccgaca ggactataaa gataccaggc gtttccccct
     2401 ggaagctccc tcgtgcgctc tcctgttccg accctgccgc ttaccggata cctgtccgcc
     2461 tttctccctt cgggaagcgt ggcgctttct catagctcac gctgttggta tctcggcccg
     2521 gtgtaggtcg ttcgctccaa gctgggctgt gtgcacgaac cccccgttca gcccgaccgc
     2581 tgcgccttat ccggtaacta tcgtcttgag tccaacccgg aaagacacgt aaaaacgcca
     2641 ctggcagcag ccattggtaa ccgtttagag gagttagtct tgaagttatg cgccggttaa
     2701 ggctaaactg aaaggacaga tttggtggct gtgctcctcc aagccagtta ccttggttca
     2761 aagagttgct gctctgagaa ccttcgaaaa gccgccttgc tgggcggttt tttcgtttac
     2821 ggacaagact accttcagga tcgttagatc tcaagacaat catgcatagt gagcatacac
     2881 aggagccgaa cttgcttaca ctgttcatct tttttgtttt attaatagct gcatgtttct
     2941 tttgttttgc tccaccacga agaggatatg acagaaatga gatcattcca tacaaaataa
     3001 aactatcaat aaataaatat cgcctttaca tatactcatc gggaaaggta agacaatacc
     3061 ttttattttt agttatttta tcactgtact actccatagc ggaaccattt aagtctgagt
     3121 taataaaaaa catatcatat tcactgatgg ctgcatttat ttttgataca gggcttaatt
     3181 ttagcaagga gaatataact aaaggagtga tttcaacaag gtggcataat gacctatatt
     3241 catcatttga gagaatgaaa gcaattaata aaatttacta cccatccaac aaagagataa
     3301 acacagaagg tctatccaaa gccatcacat catctctttt caatgatgac gcgaactcgt
     3361 tcgcaaagag agattttcgc ttgatgtggg acttatcttc tgaaaaatat ctttcctata
     3421 aagaaataat aataagaaaa ggcgataagc ttgacgctgt atgcttgaga tttataaatg
     3481 atgactacaa gtttttagtt aatttcaaca gagatgaaga ggttttcaaa tactttccat
     3541 ctataatgca accttcactc aaaacatata gagcgttatc aagactagta aactcaatca
     3601 aagatccttc tagatttaag ttcacgacag agtcattaga aatggagtta ctagaatact
     3661 tagagttaag aaatgaatta ttcaatgaca tagaagaagt aatgggtagc tatgctcaga
     3721 gggcaccata gttcatgata gccctcgata gtacttactt atatttttag agaggtttaa
     3781 gtgtaagtag agggagtaac acctggtttt tcagcatcca ctccaatgaa tgctgacacc
     3841 gatacgcgat aattctcttt atcgtagcaa aatcatcctc cagattgcgg ttgagaatag
     3901 gttcatggtg cgcaatacga ttgcgcagtt ttctcacggg acttgttagc agtaatgctt
     3961 ccccccgggg acaaacgaca gagatataca acaaaggccc gcaattaaaa tactccgtat
     4021 ttaccataac gtcgcattgc gcgtaccgct taaacgcgtt cagcgcgatc acggcagcag
     4081 acaggtaaaa acagcaacaa accacccgaa aaactgccgc gatcgcgcct ggtaaatttt
     4141 aacctcatgc atagttatgc gcgaaactga atgacgatca gtttcgcacg ttccagccgt
     4201 cgaacggggc aaaatgggga ggtttggata ttgttaatgc taatgtacgt acattaacat
     4261 tggcgccatc cgggtagggc gtgccacaaa ctggctcgat ttcagggggt accccggtca
     4321 catccccatt gacgggccac gccagatccg cgcttcgggt tcctgctctt catgccagcg
     4381 ccgggcaagc tcctgcgcct gacgctcctg ttcatccctt atctgttgtt cgtgataaat
     4441 aaccgactca agcggtcgac ttgtccggct aatagctgca cctgctgact caagttcacg
     4501 acacgctcgt tcagtatcgc gttgttctgt tgcgtaaccg cgtgcatctt ctgcaattct
     4561 gcgaaggcgc tctcccactc gttcagccgc cgc
//
