LOCUS       CP082592                4110 bp    DNA     circular BCT 13-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain CVM
            N18S0736 plasmid pN18S0736-4, complete sequence.
ACCESSION   CP082592
VERSION     CP082592.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN12930391
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4110)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4110)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2019) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 4110)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 503x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/01/2021 16:59:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,862
            CDSs (total)                      :: 4,741
            Genes (coding)                    :: 4,642
            CDSs (with protein)               :: 4,642
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 37 of 99
            Pseudo Genes (incomplete)         :: 63 of 99
            Pseudo Genes (internal stop)      :: 22 of 99
            Pseudo Genes (multiple problems)  :: 19 of 99
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="CVM N18S0736"
                     /serovar="SI 4,5,12:i:-"
                     /isolation_source="ground turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pN18S0736-4"
                     /geo_loc_name="USA:NY"
                     /collection_date="2018"
                     /collected_by="FDA"
     gene            complement(join(2561..4110,1..610))
                     /locus_tag="F9183_024180"
     CDS             complement(join(2561..4110,1..610))
                     /locus_tag="F9183_024180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UAH92639.1"
                     /translation="MAIYHLSMKIISRSNGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILSPATAPAWCTNRTELWNAVEKAERRKNSQLAREIELAIPRELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQ
                     NRLINRLSLEIQIFRTELRNSGLTEPARRVADLLNIELPDNATSYTLRDIIEALPKDSN
                     AAWKLTSNAMSMMTDMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWA
                     APEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTEFETQWQQWGASGLAALRAQL
                     LKREEELRRKELEDTERSRAERRAEQLRKNDNAVMDSGVLRAVVTGYGEAPMPGNGEMT
                     SYLLLHNRNGEYTLWGNELEKYRTRIFERVDLMRDRSGYICDRSEIGQHPPLQRVYSSA
                     TFEQLLTQVCQTWPQHTRNLRQPKTWPEFFCLGEDRQPAMPSLAARKVDFTQGRLPPTL
                     MPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNRHLVISALTDKG
                     LRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRT
                     WDEWRREEDARTHATERRHDRGWSQ"
                     /name="MobA/MobL family protein"
     gene            788..1078
                     /locus_tag="F9183_024185"
     CDS             788..1078
                     /locus_tag="F9183_024185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001514113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UAH92640.1"
                     /translation="MSRTLEQKIAEAEARLQRLKAKSRSLDTAQKVVVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVSRIQPLIDELNALPKPVPKGVSKNGQQA"
                     /name="mobilization protein"
     gene            1610..2311
                     /locus_tag="F9183_024190"
     CDS             1610..2311
                     /locus_tag="F9183_024190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UAH92641.1"
                     /translation="MVDLIAYKSNALVEASYKLTLQEQRFLLLCISRLQSGVDAPPPEL
                     QKTMTITAVEFFNSFPDMGRNHAEEKLQEAIDRLWDRSIILKDGEKREEFRWIQYRAQY
                     LKGEAKVQITFADAVMPYLTQLKGQFTKVVIKNISNLSKSYSIRIYEILQQFRNTGERM
                     ISLDDFRSMLQLEDKYKDFKTLNRALIKPAVAELNQKSDLAVTVETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     Typing          complement(253..611)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.222"
                     /coverage="100.0"
                     /evalue="3.97e-172"
     Typing          612..787
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.382"
                     /coverage="100.0"
                     /evalue="9.6e-71"
     Typing          complement(3..697)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.121"
                     /coverage="99.0"
                     /evalue="7.44e-146"
     Typing          complement(2565..4108)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.087"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 cgaggtgaat accaggcgtt ttctcaagcc cctgtcgctc gtatgaacga tggtctatct
       61 cttcctgata accggcgttc gccagtgccc tgtttgcatg gtcagcccat gatgcccgcc
      121 acgtctcggc atgtgtccgg tcgttccagt ccctgacctt tccaccgaac cccgcaggtc
      181 cgacagccct cgtggtcagc atgatgtgcg catggggatt tgttttatcc atgtgatgga
      241 acgccacatc agcaatcatg ccctgactga caaagttttc tctgacaaag gcgagaacgg
      301 tttcccgtgc ggcatcctgc ggcagttcac gggggatggc gagttcaatt tcccgcgcaa
      361 gttgtgagtt cttccgacgt tcggccttct caacggcatt ccagagttcg gtacggttcg
      421 tacaccaggc aggggcggtg gcgggggaca gaatcacagc ctcagccaca ccgcttttgc
      481 gggtgtagtc gtgagtcagt ccggtacgct catcaagcat tagtgaaccg gaacgatagg
      541 cagcagaagc aacggcgctg tagccgttgc ttctggagat gattttcatg ctgagatgat
      601 aaatcgccat ttctgccgta atgccttttt gcagttttct ttcagccccg cagggcgcac
      661 acaatcgaac cgaaggtgag attgtataag tgcgcacttc gtgatttctg cgcattatgc
      721 cagctcagtt tttaaactac cagtgacgag ctaaaatgcg atttttcacc gcgcacggag
      781 ttacatcatg agcagaacac tcgaacagaa aattgccgaa gctgaagcca gattgcagcg
      841 tctgaaggca aagagccgga gcctggacac agcgcagaag gtcgttgtag gtgctgcatt
      901 gctggcaaag gtcagaaagc cggaggaggt gcaattgcgc gcctggttac tccagttcct
      961 gaaggcagag gtgacacggc aggctgatgt gagcaggata cagccgttga ttgacgaact
     1021 gaacgcgttg ccaaaacccg tccccaaagg cgtgtcaaaa aacggccagc aggcgtgaat
     1081 gcaccatccg ctcgccgcag ccccagcgac cgagcgttag cgagcgagtg ggcgaggaag
     1141 cggaaaagct gctgcaccaa aacagggcac ttacgcgccg atgctcagtt ggtgatagcc
     1201 gttcaacccg catgaatact ggttttccac agggttgaac agcgttttgc cagtgtctgc
     1261 tgttctgctt ttttgtaact tactgttttt catgggtttt tgttttgcgc accccgagtt
     1321 ttccacaggc tcgccgttaa gtttttagat cttgttttta agatcttgtt tttaatactt
     1381 gttttcggac cgaaatttct tatggaattc aagggattag attgctatag gtgaacattt
     1441 cgggggtaaa ggtgaacatt tcgggggtgg ttaggtgaac atttcggggg taaaggtgaa
     1501 catttcgggg gtggttatcc acagaaaatg gtgaattaaa aaaaaatgat tgcaccaatt
     1561 gatggggtga actagttttt ttttagttta ctttaggtga gggtgctcaa tggttgattt
     1621 gatagcttac aaatccaatg ccttagtcga agccagctac aagctcacgt tacaggagca
     1681 gcgtttcctg ttgctgtgca ttagtcgatt acagtcaggt gttgatgctc ctccacctga
     1741 attacaaaag accatgacta ttacggctgt ggagtttttt aattcatttc ctgacatggg
     1801 aagaaaccat gccgaagaaa agttacagga agcgatcgat cgtctgtggg acaggtcgat
     1861 cattcttaag gatggtgaaa aacgcgagga gttccgttgg atccagtatc gggcgcagta
     1921 cctgaaaggc gaagcaaaag ttcaaataac tttcgcagat gctgtaatgc cgtacttaac
     1981 gcaattaaaa gggcaattca caaaagttgt aattaaaaac atatctaatt tatcaaagag
     2041 ttatagcatc agaatatacg aaatcctcca acagttccgt aacacagggg agcggatgat
     2101 ttctctagat gatttccgca gcatgctaca actggaagat aaatataaag atttcaagac
     2161 gttaaataga gccctcataa aaccggcagt ggcggaactg aatcaaaaaa gcgatctggc
     2221 cgtaacggtt gagacaatca agaaggggcg cactgtcgta gccctgcatt ttcgcttcaa
     2281 ggaagacaaa cagatcaaga tgacgatcta aaatcgattc taaggcatct aaaacgcgcg
     2341 ctgacgcgtt ttttttgtgt aaggtatgcg atggtactac gaatcacaaa aacatcgtca
     2401 gaatcgctct cacgagctaa aaaaatcccc catatgcggg gggaagaaac tatgcggaga
     2461 ttatctagtt tgttgtgtgt gcttattgac gttcatccct gtcatgtgaa cgtcacatga
     2521 acataacatg atgttaaaca aaacaaaata ttgtgcacat tcactgtgac caaccgcgat
     2581 cgtgcctcct ctcggtggcg tgtgttcgtg catcttcctc gcgccgccat tcgtcccagg
     2641 tacgattaaa acccagcgag cggaacagat gatccggctg tttttctggt gtattgacgg
     2701 cagcaaaaag cggtgcctca cgggttttca gatgaaactc cataagttcc ggtgcaggtg
     2761 atatgtggct gtctgcatcg tgattgacgg caacaccata ccctgcatac cgtaacccct
     2821 tgtccgtcag cgcactgatg accagatgcc tgttatcggc tgagggaacg gcaaacgcgg
     2881 gatacagcgt gccattaagc cggacaacgc cgcccagaga gtcatccacg cccatgacca
     2941 gcaaaagctg aagctggcgg gtttcccggt cgacagaact cattaccggc atcagcgtcg
     3001 gtggcagacg tccctgcgta aaatccacct tccttgctgc cagtgatggc atggctggct
     3061 ggcggtcttc tccaagacag aaaaactccg gccatgtctt cggctggcgg agattgcggg
     3121 tatgttgtgg ccatgtctgg caaacctgcg tcagcagttg ctcaaaggtc gcagaggaat
     3181 aaacacgttg caatggtgga tgttgaccga tttcgcttcg gtcacagata taaccactcc
     3241 tgtcacgcat taaatcaaca cgctcaaaga ttctggtgcg gtatttctcc agctcgttcc
     3301 cccagagcgt atattctccg ttccggttgt gaagcagaag gtaactggtc atttccccgt
     3361 taccaggcat gggggcctcg ccataccccg taacgactgc tctcagtacc cctgaatcca
     3421 taacggcatt gtcatttttc ctgagctgct ccgctcgtcg ctccgcgcga ctacgttctg
     3481 tatcctccag ctccttccgg cgcaattcct cttcacgttt aagcaactgg gctctgagag
     3541 ctgcaaggcc ggatgccccc cactgctgcc actgtgtttc aaattccgtc tgactcgcgg
     3601 gaatgtcctg tttctccacc ttccggtaat gctgtcgcaa tttttccatt tgctggctca
     3661 gagactgaat ttttccctgc tcactacggt attccggtgc agcccattgc atcaggggaa
     3721 tacgggaaaa accggacgaa aacggcgatg attttttcag gctggcagca tggctcatcg
     3781 cttcctttcg ttcggtgttc agctcttccc agcgtctgcg cgtcgcctgc atatctgtca
     3841 tcatcgacat ggcattactg gtgagtttcc atgccgcgtt actgtccttc ggcaacgctt
     3901 cgatgatgtc acgtagtgtg tacgaagttg cgttgtcagg aagctcaata ttcagaaggt
     3961 cagccacacg gcgggcaggc tctgtcagcc cgctgttcct gagttcggta cggaaaatct
     4021 gtatttccag gctaagcctg ttaatcagac gattctgttc gccgcgttct gtttcgatac
     4081 cgcgtgtttc catcgcacag gcagactttc
//
