LOCUS       CP082583                3754 bp    DNA     circular BCT 13-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain CVM
            N18S0935 plasmid pN18S0935-4, complete sequence.
ACCESSION   CP082583
VERSION     CP082583.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN12586952
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3754)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3754)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2019) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 3754)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 329x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/30/2021 17:29:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,771
            CDSs (total)                      :: 4,648
            Genes (coding)                    :: 4,548
            CDSs (with protein)               :: 4,548
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 37 of 100
            Pseudo Genes (incomplete)         :: 65 of 100
            Pseudo Genes (internal stop)      :: 20 of 100
            Pseudo Genes (multiple problems)  :: 19 of 100
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3754
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="CVM N18S0935"
                     /serovar="Kentucky"
                     /isolation_source="Ground Turkey (Breasts)"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pN18S0935-4"
                     /geo_loc_name="USA:LA"
                     /collection_date="2018"
                     /collected_by="FDA"
     gene            49..1068
                     /locus_tag="FWV45_023765"
     CDS             49..1068
                     /locus_tag="FWV45_023765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UAI01510.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREDAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKC"
                     /name="replication initiation protein"
     gene            complement(1329..1727)
                     /locus_tag="FWV45_023770"
     CDS             complement(1329..1727)
                     /locus_tag="FWV45_023770"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UAI01511.1"
                     /translation="MRISNIEWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNDLQAQESERKQAVQKRIEGKKQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELCYKKDRILQALKEIKYDLETSPNPDA"
                     /name="hypothetical protein"
     gene            1907..2833
                     /locus_tag="FWV45_023775"
     CDS             1907..2833
                     /locus_tag="FWV45_023775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="UAI01508.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTAEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGYDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            2836..3369
                     /locus_tag="FWV45_023780"
     CDS             2836..3369
                     /locus_tag="FWV45_023780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UAI01509.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQKLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVTLED
                     KLAEKPVTGKSRKN"
                     /name="hypothetical protein"
     Typing          50..824
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.907"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          1908..2830
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.727"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 agaatacagg ggcgaggtcg gtcgataacc tggaaggaat cgtaacacat gagcgccgcg
       61 cttcaatact tcgaagaaaa tttaccccac cgcccctatc acacggatga tctcgctttc
      121 ggccttcgca tctccggcaa agggcgtgcg cttcttgcgc ggtacatcca gcagaaccag
      181 cctcatgcgc agttctggct ggtttttgac gttgaccgcg agggggctgc gattgactgg
      241 agcgaccgga acgcccccgc gccgaacatc accgttaaaa atcctgtgaa cggacacgct
      301 cacctgctct acgcactcaa catcgccgtg agaaccgcgc ctgatgcctc ggttaaggcg
      361 ctgaaatatg ccgcagcggt tgaacgttcg ctgtgtgaga aactttgtgc tgatgtgaac
      421 tacagcggcc tgatttgcaa aaatccgttc cacctggaat ggcaggtgat ggagtggcgc
      481 gaggacgcct ataccctcga tgaactggca gattatctcg atttgagcgc ctcagagcgt
      541 cgtagcatcg ataaacatta cgggatgggg cgaaactgcc acctgttcga aatgacgcgc
      601 aaatgggctt acagggcgat tcgtcagggc tggccagcgt tctcacagtg gcttgaagcg
      661 gtgatccagc gtgtcgaaat gtacaatgca tcgcttcccg ttccgctttc actggctgaa
      721 tgtcgggcta ttggcaagag cattgcgaaa tacacgcaca ggaacttcac gccggaaact
      781 ttcgcacagt atgtggctga tacgcacacg ccagaaattc aggcagcacg cggtcgcaag
      841 ggcgggaagg ccaattcgtc agaaaatcag tcggacaaag ggaaaaaaag cgccgctgtt
      901 cggtggactg ctaacgacga caaacgtcgt agggcgcttg atatgtatat cttgggagcg
      961 tcaacggaag atattgcagt ggcggttggt gttagcagcc ggactattcg acgctggatg
     1021 gataattctg gagaatggct aaccaagaaa caaataatta aatgttagtt aacaaagaag
     1081 taacactacc ccccgttttt tgttaatggg gggttaaatt cgcggacatg aacaagccta
     1141 tatcagataa cagcgccttt cggcgtcttt ttgagcagcg ggctttccgg cggttttctc
     1201 ctctcagccc agcaatggtg cggcttaccg catgattgag gtggtcgtgc tcgccgcagt
     1261 ctcatgaccg agcgtagcga gcgaatgagc gaggaagcac cagggaaccg gaacacggat
     1321 ggaggcactt acgcgtctgg gtttggggat gtctccagat cgtacttaat ttccttaagt
     1381 gcctgtaata tcctgtcttt tttatagcat agctcgcctg tttttgtgtc taccagtcct
     1441 gcttcgatca gtagcccagc cgcgagaaag agtcggtgat tgcgttctcg tcgttgtttt
     1501 tttccctcga ttcgtttttg gaccgcctgt tttcgttcgc tctcctgtgc ctgtaagtcg
     1561 tttttttccg ctgttgccag tacgtggagg agtttgcgtt cctgttctgt gagtcctgct
     1621 tcgttgtcga gcaggtcaat aatctgtctc tgtcgtgcgg tctgttctcc gagcttcctg
     1681 atgaatccga tccgtttctt cagccattcg atgttgctga tgcgcatgtt cgtggtgctc
     1741 cctggtgttt ttttgcggtg tgttgtggtc gtgcagtata tcgcttgcgg tcggcgggtg
     1801 cagggggtat cttccgtgct aattcgtaaa attagaagga agcgcactta tatgtttctt
     1861 cgccgttggc tcagaaacat gtgcgctcct gcggagggct gaaaccgtgg caacctatca
     1921 cctcagcgtt aaatttggtg gcaaggggca ggctgcaaac cacgccgatt acatcgagcg
     1981 caaagagaaa taccgcgacc gtcaggattt ggaatattcc gcacacggaa acatgccgga
     2041 atgggcgcga gataatccct cacatttctg gcaggctgct gaccagtttg aacgtgcgaa
     2101 cggttcgacc tatcgggaac ttgaaattgc attaccccgt gaactgacag cggaacagcg
     2161 ccttgaactg gtgcaggatt ttgtacgtca ggaagctggc gaacggcacg cctggagttt
     2221 tgccattcac aatccgaaag cgagcattga cggcggcgaa cagcctcatg cgcatatcat
     2281 gatgagccag cgtgtgaatg atggcattga acgtacaccg gaacagtatt tccggcgcta
     2341 taacgccagg tatcccgagc ggggaggtgc gaaaaaggat tccggaagcc tgactctcac
     2401 tcagcaaaaa gagcagttgc gggaattgcg aaaacgctgg gaggtgaagc acaacgaaca
     2461 tatgagaaag catggctttg aaaggggctt cattgactgc cggacgctga aagaacaggg
     2521 cattgaacga cgtcccgaag tgcatctggg ttttgaagct gccggacggc ttgatgatgc
     2581 ccagcgtcat gacatcatgc aaaaacggtc tgaaccggac tattcccgcc atcttgaaca
     2641 ggcgcgaacg gtcgggtatg acatcaggga atggctggac actccggtta agcaacatga
     2701 actggtcaga aggctgcaac atgatgttgc gcgggagcat ggctttgaca tgagagacag
     2761 agtgagcaga cagaaccgaa ctgaacctga acgggttaaa tcaccgtcac gtggattttc
     2821 tatgggattc tgaacatggc cagcacagaa gaaaaattac tcacgctcct gttatcggtg
     2881 gagcatctgc aacataccgc aatggagcaa cagaaagctg ttgctgattc tctggctgtg
     2941 gcaagggaaa cacttcgcgg atatcgggat atttctgacg gtgtggcaaa acaggtcagg
     3001 gatgaagtca gaaacgaggt gcagaagctg gatgttgcag ggctgatagg tgagcgcatc
     3061 agccaggatt ttcagcggct ggaagagtca gtcgcaaaca tgaaggcaaa cgcggatgcc
     3121 ctgaacaggg atattgcgac aattcacagc aatatcgtgc aggaatacaa cacccttaaa
     3181 gggtatagct ggaaatggct gggtggggtg tcagtggctt ttctggttat gttctgtgtg
     3241 cttggatggg gaatgaaaac aatgctcgac aggaactaca acgccacagc ggcggtgtat
     3301 cagaaagttg tgacactgga agataaactg gcggagaaac ctgtcacggg caagagccgg
     3361 aaaaactgac gcgcttcgct tgtccaacgc ctcacgaccc gcgaaaaaat tccgcgtccc
     3421 gttcaccgtt ttctgatgag aaagtttgct gttttgaccc gttcgccctt ctgaacgctc
     3481 gaaacagatc gcgcatcgct ttcgtgcata gttatgcaac gcgctaaaaa cgattctgac
     3541 gcatttttct ggtttagcct ggtgtttcct tgtctttttg cgttttttgc gccagagagc
     3601 gactgagggc gttttaaggg gggcgtacaa cgggagttat ggtaaatgga tcggttttgc
     3661 gggaaggctc gacaggtttt gttgttgggg gtagtgtaag cgactgaaaa acaaacgccc
     3721 ctgaaattcg tgtctctccg ccaagattgt cacg
//
