LOCUS       CP082581                3373 bp    DNA     circular BCT 13-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain CVM
            N18S0935 plasmid pN18S0935-5, complete sequence.
ACCESSION   CP082581
VERSION     CP082581.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN12586952
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3373)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2019) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 3373)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 329x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/30/2021 17:29:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,771
            CDSs (total)                      :: 4,648
            Genes (coding)                    :: 4,548
            CDSs (with protein)               :: 4,548
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 37 of 100
            Pseudo Genes (incomplete)         :: 65 of 100
            Pseudo Genes (internal stop)      :: 20 of 100
            Pseudo Genes (multiple problems)  :: 19 of 100
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="CVM N18S0935"
                     /serovar="Kentucky"
                     /isolation_source="Ground Turkey (Breasts)"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pN18S0935-5"
                     /geo_loc_name="USA:LA"
                     /collection_date="2018"
                     /collected_by="FDA"
     gene            complement(252..443)
                     /locus_tag="FWV45_000565"
     CDS             complement(252..443)
                     /locus_tag="FWV45_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UAH97084.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            507..830
                     /locus_tag="FWV45_000570"
     CDS             507..830
                     /locus_tag="FWV45_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UAH97086.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            820..1539
                     /locus_tag="FWV45_000575"
                     /pseudo=""
     CDS             820..1539
                     /locus_tag="FWV45_000575"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1508..2068
                     /locus_tag="FWV45_000580"
     CDS             1508..2068
                     /locus_tag="FWV45_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UAH97085.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            2075..2308
                     /locus_tag="FWV45_000585"
     CDS             2075..2308
                     /locus_tag="FWV45_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UAH97083.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          88..171
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.059"
                     /coverage="95.0"
                     /evalue="8.83e-18"
     Typing          821..2391
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.817"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgtccgcgtg tgtgctgttt atcgggtgcg ctgtttttac atctgtgcgg ctttttactc
       61 ctgacatggt gcacttccca tccatgtctg caccgatgca aaatgagata agccagtata
      121 cacatcgcta tcgctctgtg aactgggtca gggctgcgcc ccgacacccg cactgacgcg
      181 ccctggcggg cttgtctgct cccggcatcc gctcacaggc aagctgtgaa cgtctccggg
      241 agctgcatgt ttcagttgct ttcaccgtca tcgccgaagc gtgcgaggca actgcggtag
      301 agttcgtcgg cgtggtcgtg aagtgattcg cagatgtctg cctgttcgtc cgcgtccaga
      361 tcgttgagtt tttccagcag ggttagcgtc tggcttctga taaagcgagc catgttaagg
      421 gctgtttttt cctgtttggt catggtctta aggctccttg tatgggggat ttgttagggg
      481 gaatgatacc gatgaaacgc gagaagatgc tcacgatacg ggttaccgat gaggagcacg
      541 cccggttact ggaacgctgc gagggtaaac gactggcgga atggatgcgg cgggtctgtc
      601 tgggggagcc ggttgcacgc acaggaaaac tgccgacact atcgccgcca ttgctgcggc
      661 atctggctgc catcgggaac aacctgaacc agacagcccg gaaggtgaac agcggccagt
      721 ggtcttcgat tgaccgggtt catgtggtgg ccgcactgat ggccatcgag ggtgaattgc
      781 gccagttgcg gcaggctgtc agggaacagg gggtacggga tgatagttaa atttcatgcc
      841 agggggaaag gcggtggaag tggcccggtc gattacctgc tggggcggga gcgtaaccgc
      901 gaaggcgcaa cggtgctccg gggtaacccg gaagaagtgc gggaactcat tgattccacg
      961 ccattctcga agaaatacac ttcaggcgtt ctgtcgttcg cggagaagga gttaccgccg
     1021 ggtgaacgcg aaagagtgat gacgagcttt gagcgtgttc ttatgcccgg tctcgaaaaa
     1081 gaccagtaca gcattctctg ggtggaacac caggataagg ggcggctcga actgaatttt
     1141 gtcatcccga acatggagct acagagcggt aagcgcctcc agccgtacta cgaccgcgcg
     1201 gacaggccga ggataaatgc ctggcagacg ctggttaatc atcattacgg gctgcgtgac
     1261 ccgaacgcac cggagaacag acggacgctt gtcacgccaa ataatctgcc aaaagcgaaa
     1321 caggaggccg cagaagcgat tacacggggt cttgaggctc tttaccatgc cggagcaata
     1381 aaaacgcgtc aggatgtcac agaggcgctt acagcggcag gttttgaggt ggtgaggaca
     1441 accaaaagca gcatcagtat tgccgacccg gagggggggc ggaatctcag gctaaagggg
     1501 gcgctgtatg agcaatcttt tacaaatggg aacagacttc gagaagaaac tgaaagagcg
     1561 agccgcttct accgagaaca tgctgaacag cgagttcagg aagctcgaag agtctgtaga
     1621 caaggcattg agcttaaaca ggcagaaaat cagagacgct atcagcgaac atacaacatc
     1681 cgtgaaaaag caactggata cgctgagcac caccgtgagc atgcagttca gcaccacaga
     1741 ggccgaactg tcccggcagc agaaaaaact gctctggcgg gtgatcaaag ggcggatact
     1801 gtttccggcg ctgaccgcgc tcagcgtcac gggcggcatt ttcctggggt gctgggggct
     1861 gatggagtgg caggaaagca agattgcgaa aaatatcctg actatcagag agcaggaaaa
     1921 cacgctggcg aaactcgagg caaaaacctg gggggtgacg ttcgtcaatg gcgagaacgg
     1981 gaaatttctg gtgttgccgg acggggtgaa aggggaaaac acctggacgg tgggcgacaa
     2041 gaacgccgtg aggctggtca gggagtaaac gagtatgacg gaactggaag ggcatttgct
     2101 gaacgcctta gagcatttgc aacaggacta tatgcggcgg ctgaacgagt gggagagcgc
     2161 cttcgcggaa ttgcagaaga tgcacgaggt tacgcaacgg aacaacgcga tactgaacga
     2221 gcgcgtcgtg atattgagtc agcaggtgca gagattagcc gggcaagtgg atcgcttgag
     2281 tcggttattt atcgcgaaca acagctaagg gatgaacagg agcgtgcccg gtacagacat
     2341 gaggtacagg aacgcgcggc acgggttcgg agtgggccat caatggagat gtgaccgggg
     2401 aagtgacgaa atcttgccat tttgaccagt tcgacggctg gggcgagcga aacaaatcgt
     2461 gtgccgtatt tgtgcatagc tatgcaacat cctgaaaacg catttcacgc gtttttgggg
     2521 attcagccag gggaaaacat ggttttttta ctttttgagc gtaaagacgt gaaaaatctc
     2581 gttattgcac ttgcgatctt tcgtcggcgg gcgtagaacg aaaacagctc gccaggaagg
     2641 cgagctgttt cgggttcatt gaggtctctg acctcctcaa tgttcctgtg gaaactgttg
     2701 agatccacaa cagaaaccag ttcattcagt ttgcatgagc cttctgtatt cttcaagaat
     2761 ttttcaacag cacagtctcc caggaacccc gaaaaaaacc tgtttttgca gatacttgcg
     2821 tatttgcgag aatcgtttgc ggttggggga gctgtgacga cggcgaccgc acgcgtgaga
     2881 gttccgctac cggcgcagag agtttcatcg acagcggaca cctgatgagt tgccacaaaa
     2941 accgtatgta gcgcggctag attggttgag ttagaccttg gcggcagttc ccggtatgtg
     3001 gtggcgtgac gggtgagatg gtgcggcgaa gacgcatacg tcacgcaggc gcgggttctt
     3061 ccactgacgc gccccgtgat cgatggcctt ggctccgtcc ggcatatcga gagcggcaaa
     3121 ctacccgtcc cttcactggg aggggtgagt tgttgccgtt ccctccaacc tttcaccatc
     3181 cggcatatcg cacgatccca tgtgcaccgc aactcctgat aactccagtg caaaaaaaaa
     3241 aaacggatct gcatcacaac gagagtgatc ccaccgctcg ccgcagcccc agcgaccgaa
     3301 cgtagtgagc gagtgggcga ggaagcggaa gagtcacaga tgcaagcatt gtgcacttac
     3361 gcgcctgtgc cag
//
