LOCUS       CP082579                5631 bp    DNA     circular BCT 13-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain CVM
            N18S0935 plasmid pN18S0935-3, complete sequence.
ACCESSION   CP082579
VERSION     CP082579.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN12586952
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5631)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5631)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2019) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 5631)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 329x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/30/2021 17:29:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,771
            CDSs (total)                      :: 4,648
            Genes (coding)                    :: 4,548
            CDSs (with protein)               :: 4,548
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 37 of 100
            Pseudo Genes (incomplete)         :: 65 of 100
            Pseudo Genes (internal stop)      :: 20 of 100
            Pseudo Genes (multiple problems)  :: 19 of 100
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5631
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="CVM N18S0935"
                     /serovar="Kentucky"
                     /isolation_source="Ground Turkey (Breasts)"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pN18S0935-3"
                     /geo_loc_name="USA:LA"
                     /collection_date="2018"
                     /collected_by="FDA"
     gene            338..1390
                     /locus_tag="FWV45_000005"
     CDS             338..1390
                     /locus_tag="FWV45_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UAH96978.1"
                     /translation="MNLQQRINKLPQLSSSFSFGKDIDNIHSFIFNETSKDKIEDLLRK
                     WVSGNQPCVFGKLASKKIKGLDFHLSIVNSPQLYNDDGHLFDFLRNERVRFKERARRGE
                     VSAHLIYFIHPQLAFARPSEELVDIQKYICSLHMPECYPIKEDVIYTESVPFQDKDGLK
                     IYKAGVNVFYSSAHRTRNHDRRIPGGILISVNAPGHFMRLAIEKGFYKDQEQALADIRN
                     MTIQSVGKGGYSHPEGISTTWHSESNLDRFGCPVHTGNSSYYSGFYHTDVLIPGELTKD
                     ERLLHEIENSDPMIFNWNVLFYVSLEEFPIDDPYYGEFIGIPVDDASMFFNSFQPRKFE
                     NKPLYEKEDD"
                     /name="hypothetical protein"
     gene            1392..2258
                     /locus_tag="FWV45_000010"
     CDS             1392..2258
                     /locus_tag="FWV45_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001335763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="UAH96979.1"
                     /translation="MIKGMLFAFLAAFSWGAAIVMSKKGVEELDAGGVFFWQICSAVIL
                     SWIVLFIKRKKLPLNSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLESVFI
                     LVLSVLICSVKINSPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVVAGVLSAAF
                     YVVISSRLIKSFEPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGILQYF
                     LAFCFYLNSLRWLPVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVGFIVTVLSVYFL
                     NRKYSEE"
                     /name="DMT family transporter"
     gene            3193..3438
                     /locus_tag="FWV45_000015"
     CDS             3193..3438
                     /locus_tag="FWV45_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001751880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UAH96981.1"
                     /translation="MSEEAEERLNWHFLLTHLCGISHRTWRTFHTIRTDAEWLSQYTLR
                     YRYVTGSGLRPDTPKVNGLTRPGGLVCSRHPLTDKL"
                     /name="hypothetical protein"
     gene            complement(3461..3652)
                     /locus_tag="FWV45_000020"
     CDS             complement(3461..3652)
                     /locus_tag="FWV45_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UAH96975.1"
                     /translation="MTKQEKTALNMARFIRGQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3717..4040
                     /locus_tag="FWV45_000025"
     CDS             3717..4040
                     /locus_tag="FWV45_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UAH96980.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3982..4740
                     /locus_tag="FWV45_000030"
                     /pseudo=""
     CDS             3982..4740
                     /locus_tag="FWV45_000030"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            4718..5248
                     /locus_tag="FWV45_000035"
     CDS             4718..5248
                     /locus_tag="FWV45_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UAH96976.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDAHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="MbeB family mobilization protein"
     gene            5255..5488
                     /locus_tag="FWV45_000040"
     CDS             5255..5488
                     /locus_tag="FWV45_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UAH96977.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          3286..3367
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          2642..2829
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          4031..5592
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggctaatgtg gcctgtagca tctggttgca taggtattca tgcggttaaa atttatcagg
       61 tgcgatcgcg gcagtttttc gggtggtttg ttgccatttt tacctgtctg ctgccgtgat
      121 cgcaccgaac gcgttttggc ggtgcgtaca atgcgacgtt atggtaaatg gagcggattt
      181 tcaggaagga gtgatactaa caactcgaac actgtgcaaa taatgatttt tttaaaatat
      241 cggtaacgat aataaattat ttcgttttac gccggtaata aatataatgt agtttcagta
      301 tataaaaaaa tatatgaggt gtcttgtggg agctttcatg aatcttcaac aacgtataaa
      361 taaactacca caattatcat ccagtttttc atttggaaaa gatattgata atattcattc
      421 atttatcttt aacgaaactt ctaaagataa aattgaagat ttactaagaa aatgggtgtc
      481 aggcaatcag ccctgtgtat ttggtaaatt ggcaagcaag aaaattaaag ggcttgattt
      541 ccatttatct attgtaaata gcccccaact atataatgat gatggtcatt tgtttgattt
      601 tttgcgtaat gaaagagttc gttttaaaga acgcgcaaga agaggagagg tcagtgcgca
      661 tctcatttat tttattcatc cacaacttgc ctttgctcgt ccatcagaag agttagtgga
      721 catacaaaaa tatatttgtt cgctgcatat gccagagtgc tatccaataa aagaggatgt
      781 tatttatact gaaagcgtac catttcagga taaagatggg ctaaaaatat ataaggctgg
      841 tgttaatgtt ttttactctt ctgctcatag aacaagaaat catgatagaa gaataccagg
      901 gggaatactt atttctgtaa atgccccggg gcattttatg aggctggcga tagaaaaagg
      961 tttctataaa gatcaagaac aagcgttagc ggatattcgt aacatgacta ttcagtctgt
     1021 tggtaagggt gggtattcac atccggaagg gatttctaca acatggcatt cagaatctaa
     1081 tttggatcgt tttggatgcc cagtgcacac cggtaatagt tcttattaca gcggttttta
     1141 tcatactgat gtattaattc caggagaatt aactaaggat gaaagattgc tccatgaaat
     1201 agaaaatagt gatccaatga tcttcaactg gaatgtattg ttttatgttt cattagaaga
     1261 gtttcctata gatgatcctt attatggaga gtttattggt attcctgtag atgatgcatc
     1321 tatgtttttt aactcctttc aaccaaggaa atttgaaaac aaaccccttt atgagaaaga
     1381 ggatgattaa tatgattaaa ggaatgcttt ttgctttttt agcagcgttc tcatgggggg
     1441 cagctatcgt aatgagcaaa aaaggagttg aagaactaga tgccggaggg gtgtttttct
     1501 ggcagatttg tagtgcagta atactatctt ggatagttct ttttataaaa agaaaaaaac
     1561 tcccattaaa ctcaaaagcg atacttgctt atgcgacagg cgtttttgaa ccattcttag
     1621 cgtatacttt tacactctac ggactttatt ttatttcagc aggaagcgca tcaattattt
     1681 tttcacttga atcagtgttt atattggtgt tgtctgttct tatttgctca gttaaaatta
     1741 attccccgca atattttata ttgttcctta taggtgcaat tgttggcagt attttggtag
     1801 ccttgccaga catcagtaat ggatcgaata atattgttgg atattgtctt gttgttgccg
     1861 gtgtgttatc ggcagcattt tatgttgtta tatcgtctcg ccttattaaa tcgtttgagc
     1921 ctatcacatt attgagcgga cagttgacat tctcccttat actgtcatcg ctctttattt
     1981 ttatatctaa atcatcaatt tatcttccgt tggaatccgt gattattgtt ttttcatctg
     2041 gaatattaca atatttttta gctttttgtt tttacttgaa ctccttgcgt tggctcccag
     2101 ttcatttggc agggataatg ttgtacttta ttccgctagt tgcattattt ttgtcatggt
     2161 tgtttttgga tgaacaattc acattcttac agggggtagg atttattgta actgtgctaa
     2221 gtgtatattt tcttaacaga aaatactcag aggagtaaca ttctgttcag gattgccccc
     2281 cggcctccat cgataccgtg ccaaatgcac gtaaaaaacg ggagcgtttc tggtgtcgga
     2341 atgtaaccaa gggggtcaga ggcgcgctaa aacgctctca ggggagtcaa atagagacgt
     2401 ttgtaacaaa aagatcaaag gatcctcttg agatcctttt tttctgcgcg taatctgctg
     2461 cctgtaaacg aaaaaaccgc cttgcagggc ggtttgatcg aaggttaagt cagcttgcag
     2521 actgcttaac caggtaactg tcttatgcga gacgagtcac caaaattgtt cttctagtgt
     2581 agccgcactc cggcagccac ttcaagtact ctctaaatat ctcgcacatg acttttacca
     2641 atggctgctg ccagtggcgc tttgtggtgt cttttccggg ttggacccaa gagaacagtt
     2701 accggagaag gcgcagcagt cgggctgaac ggggggttcc tgcatacagc ccagcccgga
     2761 gcgaactgcc taagtcgccc cgagatacca gaagacgtga gctatgagaa agcgccacgt
     2821 gtcccgtaag ggagaaaggc ggaaaaggta tccggtaatc gatatggcgg gaacgtgggg
     2881 gcgcaggagg gagcgattca ccggaaacgg tgatgatctt taagccacgt cgggtttcgc
     2941 caccgctggc ggatttcatg gttgagccgc aaggctccca cagatgcacc gaaaaagtgt
     3001 ctgttttgtg aagtccgtca ggggggcgga gcctatggaa aaagcgcctc cggcgcggcc
     3061 tttcccgggg tttcgttttt tgcgcacatg ttctttcctg gtttatcccc gggttctgtg
     3121 gataacaggg ttagcgtttt tgagaaagga gagtccgctc gccgcagccg aacgaccgag
     3181 cgtagcgagt cagtgagcga ggaagcggaa gagcgcctga actggcattt tctccttacg
     3241 catctgtgcg gcatttcaca ccggacatgg cgcacttttc atacaatccg cactgatgcc
     3301 gaatggttaa gccagtatac actccgctat cgctacgtga ctgggtcagg gcttcgcccc
     3361 gacaccccaa aggtcaacgg cctgacgcgc cctggcgggc ttgtctgctc ccggcatccg
     3421 ctcacagaca agctgtgacc gtctccggga gctgcatgtg tcagcggttt tcaccgtcat
     3481 ccccgaagcg tgcgaggcaa ctgcggtaaa gctcatcggc gtggtcgtga agcgattcac
     3541 agatgtctgc ctgttcatcc gcgtccagtt cgttgagctt ctccagcagc gttaatgtct
     3601 ggcctctgat gaagcgggcc atgttaaggg cggttttttc ctgtttggtc actgatgcct
     3661 ccgtgtaagg gggggttctg ttcatggggg taatgatacc gatgaaacgc gagaggatgc
     3721 tcacgatacg ggttactgat gatgaacatg cccggttact ggaacgctgt gagggtaaac
     3781 aactggcggt atggatgcgg cgggtctgcc tgggtgagcc ggttgcccgt tccgggaagc
     3841 tgccgacact ggcaccgccg ttactgcgtc agctggccgc catcgggaat aaccttaacc
     3901 agacagcgag gaaggtgaac agcgggcagt ggtcttccgg tgaccgggtt caggtggtgg
     3961 ccgcactgat ggccatcggg gatgagctgc gccggctgcg tctggcggtc agggaacagg
     4021 gggcgcggga tgatagttaa gtttcatgcc aggggaaaag gtggtggcag tggtccggtt
     4081 gattacctgc tgggaaggga gcgtaaccgg gaaggggcaa cggtgcttca ggggaatccg
     4141 gaagaggtcc gggaactcat cgatgccacg ccatttgcga agaaatacac gtcaggtgtt
     4201 ctgtcgttcg cggagaagga gctgccgcct ggagggcgtg aaaaagtgat ggcgagcttt
     4261 gagcgtgtac tgatgcccgg tctcgagaaa aatcagtaca gcatcctgtg ggtggagcac
     4321 caggacaagg gacggcttga gctgaatttt gtcattccga acatggagct acagaccgga
     4381 aaacgcctcc agccgtacta cgaccgggca gacaggccga gaattgatgc ctggcagacg
     4441 ctggtgaatc accattacgg tctgcatgac cccaacgccc cggagaaccg ccggacgctg
     4501 acccttcctg ataacctgcc ggaaacgaaa caggcgcttg ctgagggcgt cacacgcggg
     4561 atagacgcgc tttaccatgc cggagagata aaaggccgtc aggatgtgat tcaggcgctc
     4621 acagaggcgg ggcttgaagt ggtcagggtg acgcgaagca gtatcagcat tgcagacccg
     4681 aacggcggga ggaatatcag actgaaagga gcgttttatg agcaatcttt tacagacggg
     4741 cgcggagttc gagaaaaagc tgaaagagag agccgaatct acagagaaaa tgctgaacga
     4801 cgagttcagg aagctcgaag aatctgtaaa cagggaactg acctcaaacg aatctttaat
     4861 caggaacgct atcaacgacc atacaacagc cctgaaagaa ctgctggaga ggtatcagaa
     4921 aacgaccgtc gatacgatgg acgcgcactg gaaaaccgta ctgaaaatga gcgtgaaacg
     4981 ctggctgtgg ctgattatcg tctcagtact gatgtttgcc acgaccggga gtctgctgtg
     5041 gtaccagggc atgaagataa acgcgaatat gaatattctc cgcgagcaga aagagagtct
     5101 ggagaagctg aacgcgaaga catggggcgt gcgttatcac gaggacagca acggacgttt
     5161 tctggtgttg ccgaagggga tgaaagccga aacgaactgg acgaaggaca acggcaaact
     5221 gaacgcagtg agactggtgc aggagtgaca gagcatgacg gagctggaaa gacatttgct
     5281 gaacgcatta gagcaactgc aacaggacta tatgcagcgg ctgaacgaat gggagaacgc
     5341 cttcgtggaa ttgcagaaaa tgttttcgct tacgcaacgg gacaacgcga tgctgaacgg
     5401 gcgagtcatg cagttgagtc agcaggtgca gcacttgagc gagcggacag aacgcttgag
     5461 ccagttatac agcgagaaca ggagataagg gatgaacggc tgatgcagga acgcgaacat
     5521 gagttatctc tggagcggga gcgtcagccg gaaatccagg agcggacact ggatggccct
     5581 tcgctgggat ggtgaaacca tgaaaaatga cgtgttcagt ggattaaggc g
//
