LOCUS       CP082505                4460 bp    DNA     circular BCT 12-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain
            FSIS1606640 plasmid pF18S007-2, complete sequence.
ACCESSION   CP082505
VERSION     CP082505.1
DBLINK      BioProject: PRJNA292666
            BioSample: SAMN05150609
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4460)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4460)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2018) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 4460)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Assembly Name                     :: F18S007
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 317x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/02/2021 13:32:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,964
            CDSs (total)                      :: 4,842
            Genes (coding)                    :: 4,727
            CDSs (with protein)               :: 4,727
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 49 of 115
            Pseudo Genes (incomplete)         :: 69 of 115
            Pseudo Genes (internal stop)      :: 25 of 115
            Pseudo Genes (multiple problems)  :: 24 of 115
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4460
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="FSIS1606640"
                     /serovar="Heidelberg"
                     /isolation_source="Animal-Turkey-Young Turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="pF18S007-2"
                     /geo_loc_name="USA:MN"
                     /collection_date="2016"
                     /collected_by="USDA-FSIS"
     gene            complement(546..761)
                     /locus_tag="A8O50_024790"
     CDS             complement(546..761)
                     /locus_tag="A8O50_024790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UAE17395.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSDQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(765..1250)
                     /locus_tag="A8O50_024795"
     CDS             complement(765..1250)
                     /locus_tag="A8O50_024795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012565228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UAE17396.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMVRMVSQTWLTIVLVSALLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(1225..1989)
                     /locus_tag="A8O50_024800"
                     /pseudo=""
     CDS             complement(1225..1989)
                     /locus_tag="A8O50_024800"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1928..2251)
                     /locus_tag="A8O50_024805"
     CDS             complement(1928..2251)
                     /locus_tag="A8O50_024805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UAE17397.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2890..3003
                     /locus_tag="A8O50_024810"
     CDS             2890..3003
                     /locus_tag="A8O50_024810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UAE17392.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAATGN"
                     /name="replication initiation protein"
     gene            3333..3764
                     /locus_tag="A8O50_024815"
     CDS             3333..3764
                     /locus_tag="A8O50_024815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003511628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="UAE17393.1"
                     /translation="MNIPTHLKHKPIIAVENYDRIDGPYADDTDAMGLSVGIAQWNTPG
                     YTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICIAMDYSKHGRLSSSDDFPVSRSG
                     GNPELSRHIDLMKNELKENHEYLDESLKRLAAELKRLGY"
                     /name="DUF6530 family protein"
     gene            3848..4177
                     /locus_tag="A8O50_024820"
     CDS             3848..4177
                     /locus_tag="A8O50_024820"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UAE17394.1"
                     /translation="MKILPAEPGLYFFASFESGAHVYKVVAWSENENGGLDPQCVLTAL
                     YDKSSSSQQWELHSTSASAYQHSNDGRPFMYFITYFTSNGGIPELYNAINTLAERWGYP
                     LIDLP"
                     /name="hypothetical protein"
     Typing          complement(2353..2538)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.456"
                     /coverage="87.0"
                     /evalue="2.11e-43"
     Typing          2502..3003
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.179"
                     /coverage="96.0"
                     /evalue="1.29e-158"
     Typing          complement(455..1938)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.717"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ctgttttggg tttatagctc ccaccctcct gtggctggtt atctacaaat gaataatcaa
       61 tcttttcacc cttgactgaa acacgccccc caacatgaac taaagaccag tgctcatgca
      121 tcacatgact ttcaatcaat ccaaaagaag aaaaacccca tgaatcaaaa aaaccttgag
      181 tccatcagat gcatcaccga gagaaatgat tgcaaactca acctgctcac ctgtaccttc
      241 aaggtaagaa ggtttctcga cgttaattat agacgccccc ttcacctgat aacctttaca
      301 ggtaagatat aagtccctcc cggctgacgg ttttgtgtat gtaatgttct ccgcagaagc
      361 gactgtaaat gacataacca aaactactga gactgagcaa gcccagaaac acttcataac
      421 gcatcccttt tcattgatta actacattcc aagctcaaaa cctttctgcc gctgcgatcg
      481 ttccagctcc agcgttttct gatgctgcgc cgcccgctcc tgctgcctgt gagcttcaat
      541 cgagttcagc ctttcgacaa ccggcgcagc tgatcgctca aactctgcac ctgcctgctc
      601 aagcccgtga cgcgctcgct cagcgccgcg ttctcccgtt gcataagacc agacatcgtc
      661 cgccattccg cgaaggcgtt ctcccactcg tccagccttt tcgagtagtc ctgctgtagc
      721 tgctctaatg cgctcagcaa ctgtttttcc agctccgtca tgtgctattt ccccgccagt
      781 atcatccagc tcgaatcctc tccgaaccgt cccgcttccg ggttcaccct cacgcagcgg
      841 cgtctctgct ctccgcaggt cgagagctgc acgccgctgt tcctctcgga cagcatggcc
      901 tgcgtgcgct tctgctcccg gatggtcgtg taattgtcga gtatctgctg cccctgccac
      961 cacagaatgc ttgcgcccga tgctgtcagc agtgcagaca ccaggacgat ggtcagccac
     1021 gtctggctga ccatacgcac catgcctttc gtgcgctggc tcatggctga ggacagcttc
     1081 cggtcgtggt cgaggatggc ggcgctgatt ctcttctcgc tttcgctcag ttccgctctg
     1141 acagacttct cgtgctcgct gaatgcggct ttcagcatct cgccggtact ctgctgctgc
     1201 gctttcgatt tctgctctaa gtcctttgcc agcgttaaaa gactgttcat agatggctcc
     1261 cttcagtcgg atgtttcgcc ccccgtccgg gtcggcaatg ctgatgctgc tttttgtggt
     1321 gcgtaccacc tcaaaacctg cgctttccag cgcctcagtg acgtcctggc gggttttcag
     1381 ctccccggac gaggctaagg ccagtaaacc ccgtgtaatt gcctgagcgg cttcctgctt
     1441 cgtttccggc agcgcggacg gcgtgaccag cgcccgccgg ttttcaggcg cgttcgggtc
     1501 atgcagcccc agcctgccgt tcacgatggt ctgccaggca tcaatgcgcg gacggtcggc
     1561 gcggtcgtaa tacggctgga gacgcttgcc ggtcagcagc tccgtgttcg ggatcaggaa
     1621 gttcagctcc agccgcccct tatcctggtg ctcaacccac agcacgctgt actggtcttt
     1681 atcgagtccg ggcatcagaa cacgttcaaa gctcgccatc agcttttcgc gctgcccggg
     1741 cggtaaatcc ttttcggcaa aggacaggac gccggatgtg tacttttttg cgtagggcga
     1801 ggcgtcgata agctccctga cttcttccgg cttcccctgc agaacggtgg cgccgtcgcg
     1861 ctgtcggtct ttccccagca gataatccac cggaccggcg ccaccgccgc gccctcgcgg
     1921 gtgaaactta acgatcatcg tctgcaccct tttccagcac ggcatgccgc agccgctcga
     1981 gtccggcatc tatggccatc agcgcggcga cgacctgcac gcggtcgtgc ccgctgccac
     2041 caccggcgtt aacctgccgg gcaatctggt tgaggttgtt ccccatgccg gcaagctgac
     2101 gaagcagcgc cggcgagagc gagggaagct tgccggcgcg ggcgggtttc tcgtcaaggc
     2161 acgtctggcg catccaggct gcaagctgtt taccgtcgca gcgctccagc agacggcggt
     2221 gctcatcttc ggtcacccac atcgtgagca ttttgctgcg tttgtctgcc aatccggcct
     2281 cctgataacg ccgggacggg cgggaaatct tttcccggtc ggcgcggtgt tggacaagcc
     2341 gcaggcgcgt cagtggtttt agcaggtttc ggggcgcagc cctgaaccag tcacgtagcg
     2401 ctagcggagt gtatactggc ttaaaatgtt acaacgcagt aatggtttac gaaagtgctt
     2461 catgtggtac cgggaaatgc agcaccggtg tgtaagtgcg aaatgcagat cccggtgaaa
     2521 tgacgcctcc tcgctcactc ggtcgctgcg ctcctgccgt gagactgcgg cgggcgttgc
     2581 cagctcacga atggctggat aaagagacta agcggaaatc aggaagggct gaaaaaggat
     2641 gcggcgttgc cgtttttcca taggctccgc ccccctgccg agcatcacaa aatcagacgc
     2701 tcaaatcagt ggtggcgaaa cccgatgcgg cttagagata ccaggcgttt ccccctgatg
     2761 gctccctcgt gctcccccgc attcctgccc ttcggtttac cggtgtcatt ccgctgttat
     2821 ggccgcgttt gtctcattcc acgcctgaca ctcagttccg ggtaggcagt tcgctccagg
     2881 atggactgta tgcacgaacc ccccgttcag tccgactgct gcgccttgtc cggtaactat
     2941 cgtcttgagt ccaacccgga aagacatgca aaagcgccac tggcagcagc cactggtaac
     3001 tgagatgtgc gagagattta tctggagttc ttgaagtggg agcctgagaa cggctacact
     3061 ggaaggacag ttttggtgac tcgtctcgca caagacagtt acctggttaa gcagttcccc
     3121 aactgaccta accttcgatc aaaccacctc cccaggtggt tttttcgttt tcagagcaag
     3181 agattacgct cagccataaa tgatctcaag aagatccacg ccaacaactt caaatccatc
     3241 aattcacaaa atgttacact tactaattag taaaataagt tgttttgtta ttttattaat
     3301 taacaaccta aattcacata aaagagaatg atatgaacat ccctactcat ctgaaacaca
     3361 aaccgattat cgctgtagaa aactatgatc gaattgatgg accttatgct gatgacactg
     3421 atgctatggg gctttccgtt ggaattgctc aatggaacac ccccgggtat accgagctat
     3481 cagcaaaagt gtggcgcaac accggagaaa agtggtcacg gcaatcagaa gaattacctc
     3541 ttcatcgtgt tatcgacttg gcaacgctta tctgcatagc aatggattac agtaaacatg
     3601 gccgcttatc ttccagcgac gactttccgg tcagtcgttc aggaggcaat cctgagttat
     3661 ctcgtcacat tgatttaatg aaaaacgagc taaaagagaa tcacgagtat ttagatgaga
     3721 gtcttaagcg tttagcagca gaactaaaac gtttaggtta ttaacctccc cgtgattttt
     3781 tatacccacc acggggaatt aggtagttat tgcctctcag acagaataaa caaaaggaag
     3841 ctagctaatg aagatcctac cagctgaacc gggattatat tttttcgcat cttttgagtc
     3901 cggtgctcac gtttacaaag tagtggcctg gtcagaaaat gagaatggtg gtttagatcc
     3961 acagtgtgtg ttaacggcct tatatgacaa gagcagttcc agccagcaat gggaacttca
     4021 ctcaacttca gcatctgcat atcagcacag caatgacggc agaccattta tgtattttat
     4081 cacctacttc accagcaatg gcgggatacc tgaactttat aacgcaataa acacactagc
     4141 cgaacgatgg ggatacccat taattgattt accataacat ctcttgcgcg caccgctcag
     4201 acgcgctcag ggcgtttttc cgtcctgagc cacaaaagag cccgtcttct caccgaaaac
     4261 cgcccggaat cgcgctgata agttttgcgt gtatgcatag ccatgcacga aaatgaacta
     4321 acactctgtt caatgaattt tcatgctgta cgcagtattt tagtcttcta tgccccctcg
     4381 aaacacgcct gttcttgtgt agattttttc gacccaagat ggccttttat cagagttaat
     4441 gcagccatac aggaacacac
//
