LOCUS       CP082502                2257 bp    DNA     circular BCT 12-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain
            FSIS1606640 plasmid pF18S007-3, complete sequence.
ACCESSION   CP082502
VERSION     CP082502.1
DBLINK      BioProject: PRJNA292666
            BioSample: SAMN05150609
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2018) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 2257)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Assembly Name                     :: F18S007
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 317x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/02/2021 13:32:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,964
            CDSs (total)                      :: 4,842
            Genes (coding)                    :: 4,727
            CDSs (with protein)               :: 4,727
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 49 of 115
            Pseudo Genes (incomplete)         :: 69 of 115
            Pseudo Genes (internal stop)      :: 25 of 115
            Pseudo Genes (multiple problems)  :: 24 of 115
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="FSIS1606640"
                     /serovar="Heidelberg"
                     /isolation_source="Animal-Turkey-Young Turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="pF18S007-3"
                     /geo_loc_name="USA:MN"
                     /collection_date="2016"
                     /collected_by="USDA-FSIS"
     gene            complement(join(2038..2257,1..770))
                     /locus_tag="A8O50_000005"
     CDS             complement(join(2038..2257,1..770))
                     /locus_tag="A8O50_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UAE12672.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRLKDRKEFRPVQGWIRTTEVTRSS
                     DGSAHPHFHTLMMVPPSMLSGDGYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLAGATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            complement(1315..1542)
                     /locus_tag="A8O50_000010"
     CDS             complement(1315..1542)
                     /locus_tag="A8O50_000010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UAE12671.1"
                     /translation="MYSRHTVGTPNILVRAAPRHPANASRHAKKFRVPLTVPELVKQKI
                     AGSRAFGVGSDFVIDDVTGKTLGMVVGVTQ"
                     /name="hypothetical protein"
     Typing          complement(1955..2035)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.341"
                     /coverage="89.0"
                     /evalue="5.64e-30"
     Typing          2121..2257
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.652"
                     /coverage="100.0"
                     /evalue="1.08e-55"
ORIGIN
        1 aaccattcag gatcggccac catgtcagcc ggcttcgtgg aatatttcag ggtttcggcc
       61 accgcaccgc gcaccagttc ggcagtggca ccggccagcg attcgccatc ctttggctta
      121 cggggtttta ctgcccggac atcaacattc gggtcgtaac tgacccgcag gcactcccgc
      181 cagagttcaa cccagcgagc atgttttacg taaccgtcac cagatagcat tgagggcggc
      241 accatcatca gggtgtggaa gtggggatgt gcgctgccgt cactgctgcg ggtgacttcc
      301 gtggtgcgta tccagccctg aacaggccgg aactccttgc gatccttcag tcgctggaaa
      361 gctgcattca tccggttcag catctcgccc agctccccga tcgcacagtt gcgcacggtc
      421 agggtcagga acatccagcg ggcatcaggg taatccgcca cgatacgcgg cagggactgg
      481 tagaaacggg cttgccacat cagggagcgc ctccactggc agacaggaca gtgccggaca
      541 cggcagaaat gcgcctcacg cagcctcaga cgcgtttctc cggtttcctt gagggtagac
      601 cacccgaaac gcaataaacc gccacagagg gccatacgcg ccccgtagcg ctcatattcg
      661 gccgcaagca ggtaaatccc tcccacgtcg tcagaaacgc ttctgtgagc gtcccagggc
      721 gcatctgagg gggaatagtc cgtgaggttc tggagttcag gatttttcat gcacaccacc
      781 cgattgtggg cgatggctca tctgacgtgt tatcattgcc atatcacctg tgttagccgt
      841 atcaccaatt cgaatctcta caggtggtca cgcccccgaa cgatgcccgt cgttgcgggg
      901 gtcgctttta acgcgaccac ttccgacaga atacttccaa acccatttcg gagcaaatgt
      961 gccctcaagc cttgcgggac aagggctgga ggccaatttg aatcccagag ttatccctta
     1021 agtataaata caaggaacgc gcgcgagctt tgagcaaaaa ataaacgcaa aatcagcgct
     1081 ttttcacaac caaaaacctc aacaacacca gaagcgggat cgcaatgcta agcgccgcat
     1141 caatgcgatc aaaagcctca aaaaacatct tcacctccca caaagtttta taaatctatc
     1201 tggtttgtga ttttcgcatc cgtgttttcg ttttgcagta ctgccaattt aatttcatac
     1261 gttaaaacca tatccagcag cagatctttc aaaccgcctc gcaggtggtt ggtctcactg
     1321 cgtgacacca accaccatcc ccagtgtttt ccccgtgacg tcgtcaatca caaaatcgga
     1381 acccacgcca aaggcgcggg accccgcgat tttctgtttg acgagttcgg gaacggtgag
     1441 cggtacgcgg aattttttcg cgtgccgtga ggcgttggcg gggtgtcggg gcgcagccct
     1501 gaccaggatg tttggagtac cgaccgtgtg gcgggaatac aaacatgtat cttgtcccga
     1561 ctccgcagcg gtttttttgt ttgttgaacc gactgtaggt caccgggcaa acgttgcgaa
     1621 atggcgtcag agacgtcact ttgcggcgtt tgccctatcc tgcatcggag taaaacgcgg
     1681 ggatttcttg ttccgatttt tttgccggaa cgctggcaat tttctgccgt tctgcgctcc
     1741 tgcagctacc acggccgtgc aaaattctgg cgaacggaca gcgaattatt ttgccatttt
     1801 tgtcgcgcag ctccgccacg cgttcgacaa gctggcggca cagaacaccc acgaagtgcg
     1861 cacttataca aacttcactt cgtttcgttt gtcgtgcgat ctgcgatgct caaaaaaccg
     1921 agaaacggcg ggaattttcg ggacgggaat tttcgggaca ggatgtgcaa ttgtaatacc
     1981 gtcacacgcg acgctatcac aattgccatc tggtcagggc tgcaccccga caccctgcta
     2041 gtctgattca gttttatctt tcgtcggtga gcgacggtac tttctgacct cggttttcca
     2101 ctcgaacgcg atgcgtgaac cgtcatcgtc accctcggaa atatcatccc caatcaccat
     2161 gtcggcatcg gtttcctgat cgagcttcag tacgtctttg agtgcaccgc cggtcgccac
     2221 aaagcggcgc ttgtgcgtct ggcgggtcag ttcgagg
//
