LOCUS       CP082499                3373 bp    DNA     circular BCT 12-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain
            FSIS1607481 plasmid pF18S014-3, complete sequence.
ACCESSION   CP082499
VERSION     CP082499.1
DBLINK      BioProject: PRJNA292666
            BioSample: SAMN05720502
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3373)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2018) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 3373)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Assembly Name                     :: F18S014
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 158x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/31/2021 18:54:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,052
            CDSs (total)                      :: 4,929
            Genes (coding)                    :: 4,813
            CDSs (with protein)               :: 4,813
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 43 of 116
            Pseudo Genes (incomplete)         :: 74 of 116
            Pseudo Genes (internal stop)      :: 20 of 116
            Pseudo Genes (multiple problems)  :: 19 of 116
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Salmonella enterica subsp. enterica serovar
                     4,[5],12:i:-"
                     /mol_type="genomic DNA"
                     /strain="FSIS1607481"
                     /serovar="4,[5],12:i:-"
                     /isolation_source="animal-cattle-steer"
                     /sub_species="enterica"
                     /db_xref="taxon:440524"
                     /plasmid="pF18S014-3"
                     /geo_loc_name="USA:WI"
                     /collection_date="2016"
                     /collected_by="USDA-FSIS"
     Typing          312..395
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.059"
                     /coverage="95.0"
                     /evalue="8.83e-18"
     Typing          1045..2615
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.628"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gttgttgccg ttccctccaa cctttcacca tccggcatat cgcacgatcc catgtgcacc
       61 gcaactcctg ataactccag tgcaaaaaaa aacggatctg catcacaacg agagtgatcc
      121 ccaccgctcg ccgcagcccc agcgaccgaa cgtagtgagc gagtgggcga ggaagcggaa
      181 gagtcacaga tgcaagcatt gtgcacttac gcgcctgtgc cagtgtccgc gtgtgtgctg
      241 tttatcgggt gcgctgtttt taccatctgt gcggcttttt actcctgaca tggtgcactt
      301 cccatccatg tctgcaccga tgcaaaatga gataagccag tatacacatc gctatcgctc
      361 tgtgaactgg gtcagggctg cgccccgaca cccgcactga cgcgccctgg cgggcttgtc
      421 tgctcccggc atccgctcac aggcaagctg tgaacgtctc cgggagctgc atgtttcagt
      481 tgctttcacc gtcatcgccg aagcgtgcga ggcaactgcg gtagagttcg tcggcgtggt
      541 cgtgaagtga ttcgcagatg tctgcctgtt cgtccgcgtc cagatcgttg agtttttcca
      601 gcagggttag cgtctggctt ctgataaagc gagccatgtt aagggctgtt ttttcctgtt
      661 tggtcatggt cttaaggctc cttgtatggg ggatttgtta gggggaatga taccgatgaa
      721 acgcgagaag atgctcacga tacgggttac cgatgaggag cacgcccggt tactggaacg
      781 ctgcgagggt aaacgactgg cggaatggat gcggcgggtc tgtctggggg agccggttgc
      841 acgcacagga aaactgccga cactatcgcc gccattgctg cggcatctgg ctgccatcgg
      901 gaacaacctg aaccagacag cccggaaggt gaacagcggc cagtggtctt cgattgaccg
      961 ggttcatgtg gtggccgcac tgatggccat cgagggtgaa ttgcgccagt tgcggcaggc
     1021 tgtcagggaa cagggggtac gggatgatag ttaaatttca tgccaggggg aaaggcggtg
     1081 gaagtggccc ggtcgattac ctgctggggc gggagcgtaa ccgcgaaggc gcaacggtgc
     1141 tccggggtaa cccggaagaa gtgcgggaac tcattgattc cacgccattt tcgaagaaat
     1201 acacttcagg cgttctgtcg ttcgcggaga aggagttacc gccgggtgaa cgcgaaagag
     1261 tgatgacgag ctttgagcgt gttcttatgc ccggtctcga aaaagaccag tacagcattc
     1321 tctgggtgga acaccaggat aaggggcggc tcgaattgaa ttttgtcatc ccgaacatgg
     1381 agctacagag cggtaagcgc ctccagccgt actacgaccg tgcggacagg ccgaggataa
     1441 atgcctggca gacgctggtt aatcatcatt acgggctgcg tgacccgaac gcaccggaga
     1501 acagacggac gcttgtcacg ccaaataatc tgccaaaagc gaaacaggag gccgcagaag
     1561 cgattacacg gggtcttgag gctctttacc atgccggagc aataaaaacg cgtcaggatg
     1621 tcacagaggc gcttacagcg gcaggttttg aggtggtgag gacaaccaaa agcagcatca
     1681 gtattgccga cccggagggg gggcggaatc tcaggctaaa gggggcgctg tatgagcaat
     1741 cttttacaaa tgggaacaga cttcgagaag aaactgaaag agcgagccgc ttctaccgag
     1801 aacatgctga acagcgagtt caggaagctc gaagagtctg tagacaaggc attgagctta
     1861 aacaggcaga aaatcagaga cgctatcagc gaacatacaa catccgtgaa aaagcaactg
     1921 gatacgctga gcaccaccgt gagcatgcag ttcagcacca cagaggccga actgtcccgg
     1981 cagcagaaaa aactgctctg gcgggtgatc aaagggcgga tactgtttcc ggcgctgacc
     2041 gcgctcagcg tcacgggcgg gattttcctg gggtgctggg ggctgatgga gtggcaggaa
     2101 agcaagattg cgaaaaatat cctgactatc agagagcagg aaaacacgct ggcgaaactc
     2161 gaggcaaaaa cctggggggt gacgttcgtc aatggcgaga acgggaaatt tctggtgttg
     2221 ccggacgggg tgaaagggga aaacacctgg acggtgggcg acaagaacgc cgtgaggctg
     2281 gtcagggagt aaacgagtat gacggaactg gaagggcatt tgctgaacgc cttagagcat
     2341 ttgcaacagg actatatgcg gcggctgaac gagtgggaga gcgccttcgc ggaattgcag
     2401 aagatgcacg aggttacgca acggaacaac gcgatactga acgagcgcgt cgtgatattg
     2461 agtcagcagg tgcagagatt agccgggcaa gtggatcgct tgagtcggtt atttatcgcg
     2521 aacaacagct aagggatgaa caggagcgtg cccggtacag acatgaggta caggaacgcg
     2581 cggcacgggt tcggagtggg ccatcaatgg agatgtgacc ggggaagtga cgaaatcttg
     2641 ccattttgac cagttcgacg gctggggcga gcgaaacaaa tcgtgtgccg tatttgtgca
     2701 tagctatgca acatcctgaa aacgcatttc acgcgttttt ggggattcag ccaggggaaa
     2761 acatggtttt ttttactttt tgagcgtaaa gacgtgaaaa atctcgttat tgcacttgcg
     2821 atctttcgtc ggcgggcgta gaacgaaaac agctcgccag gaaggcgagc tgtttcgggt
     2881 tcattgaggt ctctgacctc ctcaatgttc ctgtggaaac tgttgagatc cacaacagaa
     2941 accagttcat tcagtttgca tgagccttct gtattcttca agaatttttc aacagcacag
     3001 tctcccagga accccgaaaa aaacctgttt ttgcagatac ttgcgtattt gcgagaatcg
     3061 tttgcggttg ggggagctgt gacgacggcg accgcacgcg tgagagttcc gctaccggcg
     3121 cagagagttt catcgacagc ggacacctga tgagttgcca caaaaaccgt atgtagcgcg
     3181 gctagattgg ttgagttaga ccttggcggc agttcccggt atgtggtggc gtgacgggtg
     3241 agatggtgcg gcgaagacgc atacgtcacg caggcgcggg ttcttccact gacgcgcccc
     3301 gtgatcgatg gccttggctc cgtccggcat atcgagagcg gcaaactacc cgtcccttca
     3361 ctgggagggg tga
//
