LOCUS       CP082455                2699 bp    DNA     circular BCT 11-JAN-2022
DEFINITION  Salmonella enterica subsp. enterica serovar Muenster strain
            FSIS1607861 plasmid pF18S020-qnr, complete sequence.
ACCESSION   CP082455
VERSION     CP082455.1
DBLINK      BioProject: PRJNA292666
            BioSample: SAMN05928199
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Muenster
  ORGANISM  Salmonella enterica subsp. enterica serovar Muenster
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Li,C., Tyson,G.H., Hsu,C.H., Harrison,L., Strain,E., Tran,T.T.,
            Tillman,G.E., Dessai,U., McDermott,P.F. and Zhao,S.
  TITLE     Long-Read Sequencing Reveals Evolution and Acquisition of
            Antimicrobial Resistance and Virulence Genes in Salmonella enterica
  JOURNAL   Front Microbiol 12, 777817 (2021)
   PUBMED   34867920
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2699)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2018) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 2699)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2021) CVM/OR, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-JUN-2020
            Assembly Method :: SMRTLink Microbial Assembly v. SMRTLink9.0
            Assembly Name                     :: F18S020
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 698x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 09/02/2021 12:55:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,682
            CDSs (total)                      :: 4,560
            Genes (coding)                    :: 4,459
            CDSs (with protein)               :: 4,459
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 42 of 101
            Pseudo Genes (incomplete)         :: 65 of 101
            Pseudo Genes (internal stop)      :: 16 of 101
            Pseudo Genes (multiple problems)  :: 17 of 101
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Salmonella enterica subsp. enterica serovar
                     Muenster"
                     /mol_type="genomic DNA"
                     /strain="FSIS1607861"
                     /serovar="Muenster"
                     /isolation_source="animal-cattle-heifer"
                     /sub_species="enterica"
                     /db_xref="taxon:82689"
                     /plasmid="pF18S020-qnr"
                     /geo_loc_name="USA:TX"
                     /collection_date="2016"
                     /collected_by="USDA-FSIS"
     gene            747..902
                     /gene="pspF"
                     /locus_tag="BKZ44_023400"
                     /pseudo=""
     CDS             747..902
                     /gene="pspF"
                     /locus_tag="BKZ44_023400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /note="transcriptional activator for pspABCE which are
                     induced in response to phage proteins, membrane altering
                     stresses, and impaired proton expor; incomplete; partial on
                     complete genome; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /name="pspF"
     gene            996..1640
                     /locus_tag="BKZ44_023405"
     CDS             996..1640
                     /locus_tag="BKZ44_023405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="UAE64645.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(2142..2378)
                     /locus_tag="BKZ44_023410"
     CDS             complement(2142..2378)
                     /locus_tag="BKZ44_023410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UAE64644.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     ARG             997..1637
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(2544..2699)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="90.0"
                     /evalue="2.6e-76"
     Typing          2..488
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.434"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 ttccgcttcc tcgctcactg actcgctgcg ctcggtcgtt cggctgcggc gagcggtgcc
       61 ggcttacagg cggggcggaa atttcctggg agataccagg aaggagctta acagggaaga
      121 gataaggccg cggcgaagcc gtttttccat aggctccgcc cccctgacaa acatcatgaa
      181 atctgacgct caaatcagtg gtggcgaaac ccgatgcggc ttaaagatac caggcgtttc
      241 cccctggtgg ctccctcgtg ctcccccgca ttcctgcctt tcggtttacc ggtgtcattc
      301 cgctgttatg gccgcgttta tctcattcca cgcctgacac tcagttccgc gaaggcagtt
      361 cgctcctgga tggactgtat gcacgaaccc cccgttcagt ccgactgctg cgccttatcc
      421 ggtaactatc atcttgagtc caacccggaa agacacgact tatcgccact ggcagcagcc
      481 actggtaact gatttagagg agttagtctt gaagttatgc gcctgttaag gctaaactga
      541 aagaacagat ttggttactg cgctcctcgt aagccagtta ccacggttca aagagttgct
      601 gctctgagaa ccttcgaaaa accgccttgc agggcggttt tttcgtttac agagcaagag
      661 attacgacgc cacagaaagg atctcaagaa gatccttcac cgtaatggaa atctatccaa
      721 tccgagcaca taggatacac atcgttataa cgctggatct gcgtgaattc cagcagcagc
      781 aagagaaaga ctttctacaa accagcttac agcaggctaa atttaaccag aaaaaagccg
      841 ctgaattact gggtctgact tatcatcagc tacgtgcctt gctgaagaaa caccagatct
      901 aatacgcatt tgcaggtgtc atactggcgg gtttgacgca taacgtcata aggtttacca
      961 tggcgtcatt actgtataaa aacacaggca tagatatgac tctggcatta gttggcgaaa
     1021 aaattgacag aaatcgcttc accggtgaga aagttgaaaa tagtacattt tttaactgcg
     1081 atttttcagg tgccgacctg agcggcactg aatttatcgg ctgccagttc tatgatcgcg
     1141 aaagtcagaa agggtgcaat tttagtcgcg caatgctgaa agatgccatt ttcaaaagct
     1201 gtgatttatc aatggcagat ttccgcaacg tcagtgcctt gggcattgaa attcgccact
     1261 gccgcgcaca aggcgcagat ttccgcggtg caagctttat gaatatgatc accacgcgca
     1321 cctggttttg cagcgcatat atcactaata ctaatctaag ctacgccaat ttttcgaaag
     1381 tcgtgttgga aaagtgtgag ctgtgggaaa accgctggat ggggactcag gtactgggtg
     1441 cgacgttcag tggttcagat ctctccggcg gcgagttttc gactttcgac tggcgagcag
     1501 caaacttcac acattgcgat ctgaccaatt cggagttagg tgacttagat attcggggtg
     1561 ttgatttaca aggcgttaag ttagacagct accaggcatc gttgctcatg gagcggcttg
     1621 gcatcgctgt gattggttag ttcagcgttt acaccgggag atgcgtttga cgatttactt
     1681 ttaaccagta cgactcctgg caagcattgt gaaacgtttt ctccagtgga cgaatatcct
     1741 gacctaccgc atcaacgaca tgccatctaa tgctgcattc tggacaggaa tttgatgaat
     1801 atctaaccaa ttcattttcg cgagaacaac gaataaccac tcccgaatca tgaagccatg
     1861 tcttaacgaa aatatggcta actcatagca aaaaaaaagc cccctaaggg cttttttttg
     1921 tacctgacgg tcagaccgat taaacataac atcccttgcc cgcacccccg caggcgccct
     1981 cagcgcaatc ctgctgcatc agggccgttt ccagcacctt tcctcaccag tatcccggaa
     2041 aaacgcccct gatgatttct gcgcgactgc atggctatgc acgcaggtga atggcaggtg
     2101 atttcgcagc gtcagcacca ctaaaccgcc aaaagccaaa atcagcggcg cggcgcgcgc
     2161 ggacgtgacc aggcaaaatc ggactgctgc cgctcatcct cacgtaatgc acgctggcgg
     2221 tcggcgtaac gctgcaactc aatttgcgca cgcgctctgt tcaggacgat gtgccggtta
     2281 ggctgattta gctttttacc tgacgctctt tcagctgcgg caacagcatc atcaagaaat
     2341 tttttctctg caggcgtcaa gtttgtcagt ctggccataa cgttctccag tcagaataaa
     2401 tcagcacagt ctgccagaca cagtagaaac gatgaagcgc cagcgacggt gaaaggcagt
     2461 cagaaacggt gaacgggagc ggattttaat ccggtgccgt gaggcgttgg acaagccgca
     2521 ggcgcgtcat tagcttttag ccggtttcgg ggcgcagccc tgaaccagtc acgtagcgct
     2581 agcggagtgt atactggctg actatgttgg cacggatgtg gaaatcagtg aagtgcttca
     2641 tgtagcagga gaaaaaaggc ggcaccagcg cgtcagcagg atatgtagta caggatata
//
