LOCUS       CP082152                2495 bp    DNA     circular BCT 19-OCT-2021
DEFINITION  Enterobacter cloacae complex sp. strain ECL42 plasmid pIMP-042005,
            complete sequence.
ACCESSION   CP082152
VERSION     CP082152.1
DBLINK      BioProject: PRJNA757181
            BioSample: SAMN20834670
KEYWORDS    .
SOURCE      Enterobacter cloacae complex sp
  ORGANISM  Enterobacter cloacae complex sp.
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Zhang,X.
  TITLE     Molecular characterisation of NDM-1-Producing Carbapenem-Resistant
            E. cloacae complex From a Three Tertiary Hospitals in
            Chongqing,China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Zhang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2021) Department of Microbiology, Yongchuan
            Hospital of Chongqing Medical University, Xuanhua Road, Yongchuan
            District, Chongqing, Chongqing 402106, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: canu v. 1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 338.0x
            Sequencing Technology             :: Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/26/2021 15:06:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,389
            CDSs (total)                      :: 5,269
            Genes (coding)                    :: 5,113
            CDSs (with protein)               :: 5,113
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 33 of 156
            Pseudo Genes (incomplete)         :: 117 of 156
            Pseudo Genes (internal stop)      :: 25 of 156
            Pseudo Genes (multiple problems)  :: 16 of 156
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter cloacae complex sp."
                     /mol_type="genomic DNA"
                     /strain="ECL42"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:2027919"
                     /plasmid="pIMP-042005"
                     /geo_loc_name="China: Jiamusi, Heilongjiang Province"
                     /collection_date="2016-09-23"
     gene            1..186
                     /locus_tag="K6966_26935"
     CDS             1..186
                     /locus_tag="K6966_26935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012814655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="QZS50319.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(477..668)
                     /locus_tag="K6966_26940"
     CDS             complement(477..668)
                     /locus_tag="K6966_26940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QZS50320.1"
                     /translation="MTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQILSETEPAV
                     RTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            1903..2130
                     /locus_tag="K6966_26945"
     CDS             1903..2130
                     /locus_tag="K6966_26945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="QZS50318.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          complement(234..321)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          960..1488
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 gtgaccagac aggaatccgc cgccctcaat atggccaaat ttatccgcgc acagacactt
       61 ctcctccttg agcggctcga gcagatggat ctggatgagg ctgccggctg ctgtgagcac
      121 ctgcacgatc aggccgaagc gctttacgcc atgctgaacg cacagatagg cgaggaaaat
      181 gcgtgaaaat cggtgaacgg gtgcgcaatt cagtgcgcgg ccgtgaggcg atggcggggt
      241 gtcggggcgc agccctgacc agggtatttg tgatgccggc gcgtgcgcgg tattacaaat
      301 gcacatcctg tcccggaacg gacaccggga aacagcaaaa aaaaccgggc ggcacgcccg
      361 gaactcaatc aagttagatt agattactct cactcgtcca taacagcatc atggaacgac
      421 gaccaccgtc cgtgacggcc gcctcgttta agtatggaca gaaatacaga aaatgctcag
      481 gacgaaatgt aatgaatgcg aacggattca agaaattcga gcatgacagt ccttacggcc
      541 ggttcggttt cagacaaaat ctgccggtat gcatccagca tcatggctcc ggcatcccct
      601 ccggcacgcc gtagccagac cgaaacaacg gacacaagca ggtgtcgctc atcatcacta
      661 agagtcatca gggctccgga agaaaaacca aacatggctt acctactgtt aacggcaacg
      721 cagaagaaag gtttacaggg tagcgggcag ggatgaaaaa aaaaaaattg cagtcaggcc
      781 ggaacggctg ctgaaccggt acaggcgggt tccgggcgca gcgccggacc agtcacggag
      841 cactagcgga gtgtatactg gcttaagatg tagcatggca gtaacacata gcattaatgc
      901 cacataagac aggcgcagaa agtgaaagaa aacgcgtcag gagaaaatgt gatacagaat
      961 atattccgct tcctcgctca ctgactcgct ccgctcggtc gttcggctgc ggcgagcggg
     1021 acgggcttac ggatggatca gaaatttcct gggggatgcc aggaagatac ttaacgaaga
     1081 aagcataagg ccgcgccaaa gccgtttttc cataggctcc gcccccctga caagcatcac
     1141 agaatctgac gctcaaatca gtggtggcga aacccgatgc ggcttaaaga taccaggcgt
     1201 ttccccctgg tggctccctc gtgctccccc gcattcctgc ctttcggttt accggtgtca
     1261 ctccgctgtt atggccgcgg tttctcattc cacgcctgac actcagttcc gggaaggcag
     1321 ttcgctccag gatggactgt atgcacgaac cccccgttca gtccgaccgc tgcgccttat
     1381 ccggtaacta tcaacttgag tccaacccgg aaagacacga ctaatcgcca ttggcaacgg
     1441 ccattggcaa acaggatgtg cgagagatgt ctcaagagtt cttgaagtgg cggccttagt
     1501 gaggctacac tgaaaggaca aatttggtga catgtctcgc acaagactgt taccacggtt
     1561 aggggatctg ccaggattac ctaaccttcg aaaaaccacc tgccagggtg gttttttcgt
     1621 ttacagggca agagattacg cgcggaaaaa aaggatctca agaagatcct ttataaatta
     1681 gacatccaac ctcacaaaga ggaatactta aatcatcttg gtatatgtat cggccggatt
     1741 acatctcata taagcctcct ccccgcctga caccacactt tgaccatagc acctcgcgcc
     1801 taactcgata tacagcccac catcaagcct cttttcacat aaaaaatgac ctatagttag
     1861 atggttagtg accaaaactg atatggataa aaggagctgg ctttgaaaaa gatttttgtt
     1921 tcagtgttcg cagcggcagt tgcgctttca gccctcaccg gctgcacgcg cacaagctat
     1981 gccatacaca ccaatgacgg tcgcactatt gtcagcgacg gcaaacctaa agaatcagac
     2041 tcaggcctgc ttggctatac agacgcgaat ggtgtcaaac agcagatcaa taaaaccgac
     2101 gttaaagaag tctccgaaat tccgcactga gcatcttctc cgaaaaaggc cgctaatgtg
     2161 gcctttttct ttacctgtgg ttctccgcca aaatcccagc aaattgcatc accaaagcta
     2221 aaagctttca gggttgtcta aaaagcacaa gacataagag gaagtgcggt attttataat
     2281 caagccccca agaatttacc ataacatccg ttgcccgcac cgcctgagac gcgttcagcg
     2341 cgttcctgac gaaaccatga caaaaaccac aacaaaccac cccggaaccc gtcagaaacg
     2401 cgcctgttaa attttaacgg catgcatgac tatgcaccag aatgacgcca tgctcttttc
     2461 acgcaaaaat catcaccaga cggggaaaat cacca
//
