LOCUS       CP081143                2032 bp    DNA     linear   BCT 26-AUG-2021
DEFINITION  Acinetobacter baumannii strain ARLG_6344 plasmid pARLG_6344_4.
ACCESSION   CP081143
VERSION     CP081143.1
DBLINK      BioProject: PRJNA667024
            BioSample: SAMN16351130
KEYWORDS    .
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Iovleva,A.
  TITLE     Genome Epidemiology of Carbapenem-Resistant Acinetobacter baumannii
            in the United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Iovleva,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2020) Medicine/Infectious Diseases, University of
            Pittsburgh, Scaife Hall, Suite 829 3550 Terrace Street, Pittsburgh,
            PA 15213, USA
REFERENCE   3  (bases 1 to 2032)
  AUTHORS   Iovleva,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2021) Medicine/Infectious Diseases, University of
            Pittsburgh, Scaife Hall, Suite 829 3550 Terrace Street, Pittsburgh,
            PA 15213, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8-beta
            Assembly Name                     :: ARLG_6344
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 94x
            Sequencing Technology             :: Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/12/2021 12:01:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 3,870
            CDSs (total)                      :: 3,776
            Genes (coding)                    :: 3,690
            CDSs (with protein)               :: 3,690
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 19 of 86
            Pseudo Genes (incomplete)         :: 55 of 86
            Pseudo Genes (internal stop)      :: 16 of 86
            Pseudo Genes (multiple problems)  :: 4 of 86
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="ARLG_6344"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pARLG_6344_4"
                     /geo_loc_name="USA:Cleveland"
                     /lat_lon="41.50 N 81.62 W"
                     /collection_date="2018"
                     /collected_by="Cleveland Clinic Foundation"
     gene            295..573
                     /locus_tag="ILR76_19340"
     CDS             295..573
                     /locus_tag="ILR76_19340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001143137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QZL21575.1"
                     /translation="MPSRKPRIALTVPDEINETLDRLYELTGTPKSKLIVEMLEQYVPI
                     LEQVVDTLEKIKADKENGKEIAKKFAQDMLFDGQEMLGIMAKEARDL"
                     /name="hypothetical protein"
     gene            570..1574
                     /locus_tag="ILR76_19345"
     CDS             570..1574
                     /locus_tag="ILR76_19345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="QZL21576.1"
                     /translation="MIDWASAILPCKHDPSKLISGVVMSFDPLGNNEWAVNKTLSVEGS
                     HSSKIQIKSHTDNQIYISGNPTKFLQGHNLFGSNDLVSIMDSCFEKLLTYDNLGLCPDP
                     FQRAAIKDGYYELTRVDINETWHLKNKNEVQAWIRAVGETATLKHRGAGQFSGDTAYFG
                     KNSRRWSLKCYSKGSEILAKGHKLPQELCIPEMIEYANKALRIEGVIRQLELKRRHLNV
                     AANWDIDTAEELLLEYISKLEMSDVYMLKDDVLDDLPYRLRLTYQAWLNGDDMRAILSR
                     PTFYRYRSQLLKYGVDISTKSPKEKSNVIPLIRVLEAKPVGIPDWAYEKGLVA"
                     /name="phage/plasmid replication protein, II/X family"
     gene            1642..1854
                     /locus_tag="ILR76_19350"
     CDS             1642..1854
                     /locus_tag="ILR76_19350"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QZL21577.1"
                     /translation="MAVPHTTVLQLLGKYVSFNTDTCFETYGVISNVVFNMDGTVEISI
                     GWDEFYDYSAINNLKIIGEVILYPS"
                     /name="hypothetical protein"
ORIGIN
        1 gatttttcac tgtagatata gagcatcccg aatgggtgcg aactgatata catccaccca
       61 cacccgctca ggcaggcttg ccgccgaggg ggtgtgcagt gttagtaata ctgcacattt
      121 gtctcaattt gataactttt gacacgcgaa ccgaccaata gacatacatt tcaccccctg
      181 cacatttgtc tcactacccc ctgcacattt gtaccatttt tttacttttt ttatttacta
      241 ttgattattt aagtgctaca ttttttgaaa atggttactc ctttagaata atttatgcct
      301 agtagaaaac ctagaatagc cttaactgtt cctgacgaaa ttaatgaaac tttagatcgt
      361 ttgtatgaac ttactggcac tcctaaatct aagctcattg ttgagatgtt ggagcaatat
      421 gttcctattc ttgaacaagt tgtagatacc ttggaaaaaa tcaaagctga caaggaaaac
      481 ggaaaggaaa tagctaaaaa gttcgctcaa gatatgcttt tcgatggtca ggaaatgtta
      541 ggcattatgg ctaaagaggc tcgtgattta tgattgattg ggcatctgca atactccctt
      601 gtaaacatga ccctagtaag ctcatatctg gcgttgttat gtcttttgac ccattgggta
      661 ataatgaatg ggctgttaac aaaacactga gtgttgaggg ttctcattct tcaaagattc
      721 aaatcaaatc acatactgat aatcagattt acatttcagg caatccaact aaatttttac
      781 agggtcataa tctttttggc tctaatgact tagtttcaat aatggattca tgttttgaaa
      841 agcttttaac atacgataat ttaggtttat gccctgaccc attccaaaga gctgctatta
      901 aagatggtta ctatgaactg actagggttg atattaatga aacttggcat cttaaaaata
      961 aaaatgaggt tcaagcctgg attcgagctg taggtgaaac tgcaacttta aaacatcgtg
     1021 gggctggtca attctcaggt gatactgctt attttggtaa aaattctcgt cgttggtctc
     1081 taaagtgtta ctccaaaggt tcagaaatcc tagcaaaggg tcacaaatta ccacaggaat
     1141 tatgtattcc tgaaatgatt gaatatgcta acaaagcctt gagaatagag ggtgtaataa
     1201 ggcaattgga acttaaaaga cgccatttaa atgtagctgc taattgggat atagacacag
     1261 cggaggagtt actcctagaa tatatatcta aattagaaat gagtgatgtc tatatgctca
     1321 aagatgatgt tttagatgac ttgccatatc gcttgcgtct cacatatcaa gcttggttaa
     1381 atggtgatga tatgagagct atcctatctc gcccaacctt ttatcgttat agatcacagt
     1441 tgttaaaata cggtgtagat atatctacta aatcaccaaa agaaaaatct aatgtaattc
     1501 cattaattcg ggttttagaa gcaaaacctg taggtattcc tgactgggct tatgaaaagg
     1561 gtctagtcgc ttaaaccgct gcatagaggg acggcaatcc ccctatacag ctaaccacaa
     1621 cgatctttcg aggagatcat catggctgtg ccacatacta ctgttttaca acttttaggc
     1681 aagtacgttt cattcaatac tgacacctgt tttgaaacat atggagttat ttccaacgtc
     1741 gtttttaata tggatggtac tgttgaaata agtattggct gggatgagtt ctatgattat
     1801 tctgctatca ataatctaaa gattattggg gaagtcatct tgtacccatc ataatataag
     1861 cgccttaagg cgcttttttt gtatgacaaa actaccatat gcaatctatt tgcctatcct
     1921 gccttactaa acattactta tataatcttt agttacagag atggcggagt gccatcgaac
     1981 tgacgcaata aaaatctcta agcctccttt ccctgattac aagctccctt tt
//
