LOCUS       CP074318                5926 bp    DNA     circular BCT 11-MAY-2021
DEFINITION  Salmonella enterica subsp. enterica serovar Soerenga str. 695
            plasmid pCFSAN001321, complete sequence.
ACCESSION   CP074318
VERSION     CP074318.1
DBLINK      BioProject: PRJNA186035
            BioSample: SAMN01813423
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Soerenga str. 695
  ORGANISM  Salmonella enterica subsp. enterica serovar Soerenga str. 695
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5926)
  AUTHORS   Hoffmann,M., Balkey,M. and Luo,Y.
  TITLE     Whole genome PacBio Sequel sequence of Salmonella enterica subsp.
            enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5926)
  AUTHORS   Hoffmann,M., Balkey,M. and Luo,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAY-2021) CFSAN, US FDA, 5001 Campus Drive, College
            Park, MD 20740, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 207x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/03/2021 12:50:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,594
            CDSs (total)                      :: 4,475
            Genes (coding)                    :: 4,390
            CDSs (with protein)               :: 4,390
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 42 of 85
            Pseudo Genes (incomplete)         :: 45 of 85
            Pseudo Genes (internal stop)      :: 16 of 85
            Pseudo Genes (multiple problems)  :: 15 of 85
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5926
                     /organism="Salmonella enterica subsp. enterica serovar
                     Soerenga str. 695"
                     /mol_type="genomic DNA"
                     /strain="695"
                     /serovar="Soerenga"
                     /isolation_source="Filter from Dairy Farm"
                     /sub_species="enterica"
                     /db_xref="taxon:1124967"
                     /plasmid="pCFSAN001321"
                     /geo_loc_name="USA:TX"
                     /collection_date="2003-08-16"
                     /collected_by="dairy farms, collected by USDA, JoAnn
                     VanKessel, NAHMS"
     gene            1..924
                     /locus_tag="JYN39_22935"
     CDS             1..924
                     /locus_tag="JYN39_22935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="QVC52580.1"
                     /translation="MHNAALELFNDRLPHKPYFSDDLHFGVRIAGKERAILAKYIQFNQ
                     PHAMFWLGFDVDRAGAAIDWSDRNAPAPTLTITNPDNGHAHLLYALKTSIRTAPDGKMK
                     PLRYAAAVENALRKKLEADAGYSGLICKNPNHGHWKIAVWQPELYTLDWLADFLDLNAA
                     NDKEIVADYGLGRNCTLFDRTRKWAYRAIRQGWPEYDQWLQACYERACVYNLQFAAPLD
                     ENEVSAIAKSIAKWTGKNFSKETFSSYVKKTHSSSIQSLRGRIGGSKSRGGGRYIDDFS
                     ERTLEPWLDMGISRATYYRRKKKSGI"
                     /name="replication initiation protein"
     gene            914..2692
                     /locus_tag="JYN39_22940"
     CDS             914..2692
                     /locus_tag="JYN39_22940"
                     /inference="COORDINATES: protein motif:HMM:NF016724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="QVC52581.1"
                     /translation="MAFEKKDITAKHKLRRPQTEAFGKIREHYEKKELKEVGLILPVGC
                     GKSGLISITPYATESSRVLIIAPGKKIRDQLAKDMKFNEPDNFYNKCEFFDLVDDYPEV
                     CIIEAGGKTNIHDIRSSDIVVSNIQQIAGDENKWLEQLDADFFDLIIVDEAHHNKASTW
                     VKVKEKFPNAKVINYSATPMRSDGQLMSGEIIYSFPVVEAIREGYIKRLHAKMISPSKL
                     VYVDSDGNEITLTNPEDIKRLGEEEASFRRGVLMSDETLSTLVDLSIKELNRLREESGE
                     KRLKIIASALNYGHCIQIKEAFLARNLRADYVHSNEDGAVNDRVFSKLENHELDVIVQS
                     KMLGEGFDHKFLSVAMVGSVFSNLSPFVQFVGRVMRVVKQNSPGDLVNRGVVVFHVGAN
                     IANRWSDFRNFSQADQDFFADLLPEVEDVDFGSDGTSDRDPDETGGSNQLIPVEVTSTD
                     GVTASELDPIGDFQELKKELASLGMTTNEAIEILRRSRLSKQDQRRAGRQAINDLVNHH
                     AGLLINQLGFKPKGRNFNKSQDNYSWVVRELHNRVNEHIGCNSGDRENLSLEQVDEAKS
                     AVPNLAEDIRQEWSNG"
                     /name="DEAD/DEAH box helicase family protein"
     gene            2685..2918
                     /locus_tag="JYN39_22945"
     CDS             2685..2918
                     /locus_tag="JYN39_22945"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QVC52582.1"
                     /translation="MAKFKSLIVGAKFEVASRKTTCKHDKKHVITKGEFRLSVKNSTQG
                     ESYYCLSCAKTMVTESQAKLEGLKSELDSLSL"
                     /name="hypothetical protein"
     gene            3170..3496
                     /gene="mobC"
                     /locus_tag="JYN39_22950"
     CDS             3170..3496
                     /gene="mobC"
                     /locus_tag="JYN39_22950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="QVC52577.1"
                     /translation="MEKRTKEIKIRLTETEHQRLLDRCDRTHLAEWLRQLGLGEHTSRK
                     RRVPDVAPELLRQVSGIGNNLNQIARRLNQTDSLTPSERASLLVVLTSLDRQLGDLLEQ
                     NRDR"
                     /name="mobC"
     gene            3486..4334
                     /locus_tag="JYN39_22955"
                     /pseudo=""
     CDS             3486..4334
                     /locus_tag="JYN39_22955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000635827.1"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            4720..4953
                     /locus_tag="JYN39_22960"
     CDS             4720..4953
                     /locus_tag="JYN39_22960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016946053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="QVC52583.1"
                     /translation="MTEMEKQLLSALESLQTSYEQQQQAWQDSYSSLQHMFEATSQALT
                     HSDRVCQHLSSQVDSLRAQVESLSRNVSRLMR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            5115..5447
                     /locus_tag="JYN39_22965"
     CDS             5115..5447
                     /locus_tag="JYN39_22965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="QVC52578.1"
                     /translation="MSHAIEFIETPMFTRQIKQIATDEELRELQKTLIESPDKGDIIQK
                     TGGLRKVRMATGNQGKSGSARVIYFLATAEVIYLVMAYPKSTKDSLTDAEKAALKTLTQ
                     QLKDEV"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            5449..5733
                     /locus_tag="JYN39_22970"
     CDS             5449..5733
                     /locus_tag="JYN39_22970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="QVC52579.1"
                     /translation="MSFFDELKASLEEAVEIKNGVREPARVTRYELADVKAIRAQLNVS
                     QSEMAKVLGTSLDTIKSWETGRRNPTGLAAKVLATIQANPKFFQELAAH"
                     /name="helix-turn-helix domain-containing protein"
     Typing          3487..5051
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.828"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttgcataacg ctgcactcga actcttcaac gaccgcttac cgcacaagcc gtacttttcg
       61 gacgatctgc attttggtgt acggattgcc ggtaaggaac gcgccattct ggcgaaatat
      121 atccagttca atcagcctca tgccatgttc tggctgggat tcgacgttga tcgcgccggt
      181 gccgccatcg actggagcga ccgcaacgcg cccgcgccca cgctgaccat taccaacccc
      241 gacaacggac atgcgcacct gctgtatgcg ctgaaaacct cgatacgcac cgcgccggac
      301 ggaaaaatga agcctctgcg ctacgctgcc gccgtggaga acgcgctacg caaaaaatta
      361 gaggctgacg cggggtattc aggtctaatc tgcaaaaatc cgaaccacgg ccactggaaa
      421 attgccgtgt ggcagccgga actctacacg ctggactggc tggccgactt tctcgactta
      481 aacgcagcga atgacaaaga aatcgtcgcc gactacggct taggccgtaa ctgcaccctg
      541 ttcgacagaa cccggaagtg ggcatatcgc gccatccgtc agggctggcc tgagtacgac
      601 cagtggctac aagcctgcta tgaacgtgcc tgcgtttata acctgcaatt tgcagcgcct
      661 ctggatgaaa atgaggttag tgcgatagct aaaagtattg cgaagtggac tggtaaaaac
      721 ttttcaaaag aaaccttttc ttcttatgtt aagaaaactc actcatcttc cattcaatca
      781 ttgagggggc gaattggagg aagtaagagt agaggcggag gaagatatat agatgatttc
      841 agtgaaagaa ctctggaacc atggttagac atggggatca gccgagctac ctactacaga
      901 aggaagaaaa aaagtggcat ttgaaaaaaa agacatcaca gctaaacaca agttaagaag
      961 accacagacc gaggcattcg gtaagataag agaacactac gaaaaaaaag aattgaaaga
     1021 agttgggctc atactgccgg ttggttgcgg gaagtctggt cttatatcaa taactccata
     1081 tgcaacagaa tctagccgtg ttcttataat tgcgcctggt aaaaaaataa gagaccagtt
     1141 agctaaagac atgaagttta atgagcctga taatttttac aacaagtgcg aattttttga
     1201 tttggtagat gactatccag aagtttgcat aattgaggca ggtggtaaga ctaatataca
     1261 cgacattagg tcaagtgata ttgtcgtttc caatatccaa caaatagctg gagatgagaa
     1321 taaatggctt gagcagttgg atgctgactt ctttgatttg attattgttg atgaagccca
     1381 ccacaacaag gcaagcacat gggttaaggt taaagaaaag ttcccaaatg cgaaggtgat
     1441 aaactatagc gccactccaa tgaggagtga tggccagttg atgagcggtg aaattatata
     1501 tagtttccct gtggttgaag caattaggga agggtatatt aaaaggcttc acgccaagat
     1561 gattagtcca tcaaagttgg tatatgttga tagtgatggt aatgaaataa ccttaacaaa
     1621 ccctgaggat attaaaagat taggtgagga agaagcatca tttaggcgcg gcgttctcat
     1681 gtctgatgaa acacttagta cattggtaga tctttctatt aaggaactaa atagacttcg
     1741 agaagagtct ggggaaaaaa ggttaaaaat cattgcatct gcactgaatt acggtcattg
     1801 cattcagata aaagaagcat ttctggctag aaacctacga gctgattatg ttcactctaa
     1861 cgaagatggg gctgttaatg atagggtttt ctctaaacta gagaatcatg agctagacgt
     1921 tattgttcaa tcgaaaatgc ttggtgaagg gtttgaccac aaatttttat ctgtagctat
     1981 ggttggtagc gttttttcta atttgagccc atttgttcag tttgttggcc gagtaatgcg
     2041 agtagtaaaa caaaattccc ccggcgattt agttaacaga ggagttgttg ttttccatgt
     2101 tggtgcaaac attgccaatc ggtggagtga ctttaggaat ttcagtcagg ccgatcagga
     2161 cttcttcgct gacttgttac cagaagttga agatgttgat tttggctccg atggcacaag
     2221 tgacagggat cctgatgaga cagggggtag taaccagctt atacctgtcg aggttactag
     2281 cactgatggt gtaacggctt ccgagttaga tccaatcgga gatttccaag agcttaaaaa
     2341 agaactggca tctttaggta tgacaactaa tgaggcgata gagattttgc gtaggtctag
     2401 gttgagcaaa caagatcaga gaagagctgg aagacaggct attaacgatc ttgttaatca
     2461 tcatgcgggc ttgctcatta atcaacttgg gttcaaaccg aaaggccgaa atttcaacaa
     2521 gtctcaagat aactactcat gggttgtaag agagttgcat aatcgagtta acgaacatat
     2581 tgggtgtaac agcggtgata gagaaaatct tagtttagag caggttgatg aagctaaatc
     2641 agctgtgcct aaccttgcag aagacatccg acaggaatgg tctaatggct aaattcaagt
     2701 ctcttattgt tggcgccaag tttgaggttg cctctaggaa aaccacctgt aaacatgaca
     2761 aaaagcatgt gattacaaaa ggtgagttca ggctaagcgt aaagaattcg acgcaaggtg
     2821 aatcttacta ttgcctctcc tgtgccaaaa cgatggttac tgaaagccag gccaaactag
     2881 aaggtctcaa aagcgagctc gattccctct cactttaggt gagaccataa caagcctata
     2941 tcagataaca gccctctcta gcagagggct ttttttttgc agccagtata taatctgaca
     3001 tgacagttat aatctgacat actgcatcat actctaagcc agtacacaca gcgtcccctc
     3061 tatcgaggtg cctccgtgac tggttcaggg ggctcgccgc cccccgaaac ccctggcatc
     3121 cactgcgaaa aattctcacg gtggtgcgaa ttttctctca gcggagccta tggaaaagcg
     3181 aacgaaagag atcaaaatcc ggctcaccga aaccgagcat cagcgactgc ttgatcgctg
     3241 cgaccggact caccttgcgg agtggctgcg tcagctaggt ctgggtgaac acacctcacg
     3301 caagcgccgt gtgcctgacg tggcgcccga actgcttcga caggtcagcg ggattggcaa
     3361 caacctgaac cagattgccc gccgcctgaa ccagactgat tccctgacgc cttctgaacg
     3421 tgcttcgctg ctcgtcgtac tgaccagcct tgaccgtcag cttggcgacc tgctggagca
     3481 gaaccgtgat cgttaaaatt cactcacgcg gtgcaggttc cggcagtggt cctgtggatt
     3541 acctgcttgg aaaagaccgt cagcgcgaac aggccagcgt actgcgcggc aaccccgaac
     3601 atgtgcgcga gctgatagac ggctgcgact ttgcccgcgc ctatacctcc ggcgtgctgt
     3661 cgtttcagga gccggacatt gcagatgccg agaaatcacg cctgatggac gaatgggagc
     3721 acacgctgct gcctggcctc gaccgtgacc agtacgcctg cctgtgggtg gagcaccgcg
     3781 acaagggacg gcttgagctg aattttgtta tcccgaacat cgaattacag agcggcaagc
     3841 gcctgcaacc ctactttgac cgcgccgacc gcccccgcgt caacgcatgg cagaccctga
     3901 ccaacgaccg gctggggctg cgcgacccga acgacccgac ttaccgccgc ccgctgacgc
     3961 aggccagcga tctgccccgc gacaaacagc aggcggcaga gaaaatcacc gccggcctga
     4021 tgaacctgat gcagcagggt gtgatccgca gccggcagga cgtagtgacg cagctggaaa
     4081 gctacggcct gaccgtggcg cgggaaacga aaagcagcat cagcattgcc gatccggacg
     4141 gcggccgaaa tatccggctg aaaggaatga tttatgagcg agattttaaa tttggcgaag
     4201 ggcttcgagg agaaatcgaa gcagcaggcg caggataccg agcagagcgt gaagcgcgag
     4261 ttcgtgaggc tggagacgtc tatcagcgcg gaactgcaat caagctcgca gagcatcagc
     4321 aacgctatcc gcgagcagaa cggcaggctg acgggcatgc tcaggaagtc agtctcaaca
     4381 gcgatggcgt ggatattctt ctgcttcgca ctgctgatcg gcatcatggg cgggataatc
     4441 tggtttcagg gcacgatcat cacctcgcgc ctgagcgaga tggacagcta cagccagcag
     4501 ctggcgaacc tgaaagcgaa aagcggcgcg ggcgtgacga tttacagcga cgacacgcgc
     4561 cggaacacct acctggtggt gctgccgaag caggcgcacg gcgtggaaac ctacacgtcg
     4621 acgaccgaca acaccgtggt gaaatacaca gcgaaataac ccctccagag cgccctgaaa
     4681 cgccacagcg cgtttttaac actgaggacg accaaaacca tgaccgagat ggaaaaacag
     4741 cttctgagcg ccttagagag cttacagaca agctacgagc aacagcagca ggcgtggcag
     4801 gacagctaca gcagtttgca gcacatgttc gaggctacct cacaggcgct cacgcacagc
     4861 gaccgggtgt gtcagcactt gagcagtcag gtggacagct tgcgcgcgca ggtcgagagc
     4921 ttgagcagga acgtcagccg cttgatgcgc tgatcaggca gcacgaccgc gcctacgccg
     4981 agaagctgcg tgagcagcag ccagagccgg agccgcagaa aaaaccgacc cgctactatg
     5041 gcccctcgat gtgaccgctt ttccggaatc agaattaggt gtactatgta ctccattaaa
     5101 aacaggagac agccgtgagt cacgcgattg agtttatcga gaccccgatg tttacccgtc
     5161 agataaaaca gatcgccacg gatgaagagc tcagggagct gcaaaagacg ctgattgagt
     5221 cgccggacaa aggcgatatc atccagaaaa ccggcgggct gcgaaaagtc aggatggcga
     5281 cgggcaatca gggaaaaagc ggcagtgcga gggtaattta ttttctggcc acagccgagg
     5341 tgatttatct ggtgatggcc tacccgaaaa gcaccaaaga cagcctgacg gacgcggaga
     5401 aagccgcgct gaagacgctg acccaacaac tgaaagacga ggtgtgacat gagttttttt
     5461 gacgagctga aagcatcgct ggaagaagcc gttgaaatca aaaacggcgt cagagagcct
     5521 gcccgcgtca cccgttacga gctggcagac gtgaaggcca tcagggcaca gctgaacgtt
     5581 tcacagagcg agatggcgaa agtgctggga accagcctcg acactatcaa gagctgggaa
     5641 accggacgcc gtaatccgac cggactggcg gcgaaggtgc tggcaaccat ccaggcgaat
     5701 ccgaaattct tccaggaact ggcggcgcac taagccgttg tgacagaagg attcgacaga
     5761 cgaggccgtt cgcgtgtaat ttaacggcaa cagaaaaaac aaagccccgg aaatcatgct
     5821 cattcttggc ggagcgacat gataaccagg gccaggtacg aaaccttgaa aggatattag
     5881 cacatgaacc gtgccagaca acagaccgcc ataagcgcag ggcgca
//
