LOCUS       CP073307                1697 bp    DNA     circular BCT 28-APR-2023
DEFINITION  Klebsiella michiganensis strain CZ598 plasmid pCZ598_2, complete
            sequence.
ACCESSION   CP073307
VERSION     CP073307.1
DBLINK      BioProject: PRJNA722384
            BioSample: SAMN18753391
KEYWORDS    .
SOURCE      Klebsiella michiganensis
  ORGANISM  Klebsiella michiganensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Finianos,M., Kraftova,L., Papagiannitsis,C.C., Adamkova,V.,
            Hrabak,J. and Bitar,I.
  TITLE     Genomic characterisation of three GES-producing Enterobacterales
            isolated in the Czech Republic
  JOURNAL   J Glob Antimicrob Resist 29, 116-119 (2022)
   PUBMED   35231657
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Bitar,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2021) Microbiology, Charles University in Prague,
            Alej Svobody 1655/76, Plzen 1 32300, Czech Republic
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Microbial assembly v. 1.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 560X
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/21/2021 13:51:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 6,187
            CDSs (total)                      :: 6,072
            Genes (coding)                    :: 5,925
            CDSs (with protein)               :: 5,925
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 49 of 147
            Pseudo Genes (incomplete)         :: 101 of 147
            Pseudo Genes (internal stop)      :: 24 of 147
            Pseudo Genes (multiple problems)  :: 18 of 147
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Klebsiella michiganensis"
                     /mol_type="genomic DNA"
                     /strain="CZ598"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1134687"
                     /plasmid="pCZ598_2"
                     /geo_loc_name="Czech Republic: Pilsen"
                     /lat_lon="49.73 N 13.37 E"
                     /collection_date="2019-12-02"
                     /collected_by="FNP"
     gene            join(1571..1697,1..74)
                     /locus_tag="KDU73_30820"
     CDS             join(1571..1697,1..74)
                     /locus_tag="KDU73_30820"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="QUG49846.1"
                     /translation="MLKKDDIILIKSYGNEKTKIFLRGVNEVLMIDASFEEVKFAINND
                     LQDLQDLQGMQAVSAPLKIVT"
                     /name="hypothetical protein"
ORIGIN
        1 ataatgacct tcaggatctt caggatcttc agggaatgca ggcagtaagc gcaccgctaa
       61 aaatagtaac ctgattttta gtaagagcac tcaacattta ccataacatc cgttgcccgc
      121 accgcctgag aggccctcag ggcgtttctg aggcctccgg cctgaaacac acacctttct
      181 gtgaccatat cgagaaaaaa cgcccctgat gattctggcg cgactgcatg gctatgcacg
      241 gacatacctg gccgggattt tagccgctaa aatccgatga acgccctgaa agccaccacg
      301 aaccaccccg ataacggtga acggatgcgc aatttattgc gtggccgtga ggcgttgccg
      361 gcgcagccgg aaaacccgtt ttcagcacgt tcaggaaggg ggtcgatgta cgaatggttc
      421 agggaacgga tctgaggtga tccggtagtt actttttagt ttatctgtag ttttcttgta
      481 gtctgccatc actaatgcaa aacgtttttt gtagtttatc tgtagttttt ggttgctcag
      541 atggtcatgc aagcatgacc atcaaagaac aggacgcttt ttagccaaat aacccttaac
      601 ctacggagag cgccctacca aaaatgatga ttttttaacc cttaaatggt catacaccta
      661 acgcagccgc gattttcatc gcaactacat gaattaaaag aaaaaaaagg aatatttcgt
      721 tttcacgagt aatacccggg tattaaaatc cactgtaatt acatgaaagg aaagaaataa
      781 agagtaatac cggggtatta ctggccacgt ataagtttcg ccatgttcat gactgacttt
      841 tgttgtttgt tcacgttcag actccgtgtg acagtgctta tctcagcaag gtagatatga
      901 cgcttcctcg cactgacaga ctccgctagt cagtactgcg gcgagcgtta ctgaatttca
      961 tgtgaaggag atgtttttga ttccgggcct ttaaatgtac aaaagccccg tgacagaatc
     1021 acagggcttc ggtactctaa ttcttcgcag atacctgcca ggatcagacg tgagaatcta
     1081 aatcctagca gggctggcta gcgatgtcac taccagctta ataccattca acgacattaa
     1141 aatcatatct gcaccttaga cgctcaggtc tacgccccgg actccggcag gataaacagg
     1201 caaattggtg ggaacgtaac ttaaccgcga aagagttagg ctctaccccg tctcgctgta
     1261 cgataacaag cacctgataa aatgagcgaa taagacagca gtaagcggca aagtgtgatt
     1321 ctcagacgtc agcacagcgc ccacacaatc aaaccttttg cagggtgaga cacacaagaa
     1381 acgagctaga cgaaggtcgc tacgctcccc gtgattttta tatacccacc acgggggcat
     1441 taggattttt tttgtttttt ttgtatgtac aaactcaagg atttaggaat aatctcaatc
     1501 cccttaacaa gcacatgcaa aaaaaaccat gacgatgctt catctcaaaa caataagtaa
     1561 cgaaagtatc atgctaaaaa aagatgatat tatcctaata aaatcatatg gtaacgaaaa
     1621 aacaaaaata tttttacggg gtgtgaatga ggttctaatg attgatgcga gctttgaaga
     1681 ggtaaagttt gctatca
//
