LOCUS       CP073296                3085 bp    DNA     circular BCT 26-APR-2021
DEFINITION  Klebsiella pneumoniae strain 135077 plasmid p4_135077, complete
            sequence.
ACCESSION   CP073296
VERSION     CP073296.1
DBLINK      BioProject: PRJNA353728
            BioSample: SAMN18793521
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Zhao,Q., Liu,L., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Klebsiella pneumoniae strain 135077
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Zhao,Q., Liu,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2021) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/20/2021 11:29:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,740
            CDSs (total)                      :: 5,619
            Genes (coding)                    :: 5,479
            CDSs (with protein)               :: 5,479
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 51 of 140
            Pseudo Genes (incomplete)         :: 87 of 140
            Pseudo Genes (internal stop)      :: 20 of 140
            Pseudo Genes (multiple problems)  :: 18 of 140
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="135077"
                     /isolation_source="urine"
                     /db_xref="taxon:573"
                     /plasmid="p4_135077"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2020-06"
     gene            join(2869..3085,1..689)
                     /locus_tag="KC089_28680"
     CDS             join(2869..3085,1..689)
                     /locus_tag="KC089_28680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="QUF98508.1"
                     /translation="MQDLNDFAWFVQVVDHGGFAAAGRALDQPKSKLSRRIAQLEERLG
                     VRLIQRTTRQFAVTEVGQTFYQHCKAMLIEAEAAQQAVETLRAEPRGSVRITCPVTLLH
                     VHIGPMLARFMARYPGVTLHLEATNRRVDVVGEGVDVAIRVRPRPIEDSDLVMRVLADR
                     GHRLVASPDLISRLGRPQAPSELSAWPGLSLGANKHQHKWQLTGPGGARAEVYFTPRMV
                     TTDMLALREAAMAGVGVVQLPLLMVRDQLASGELEVVLDEWQPRREAIHAVFASRRGLL
                     PSVRALVDYLSEEYQRMEED"
                     /name="LysR family transcriptional regulator"
     gene            complement(784..921)
                     /locus_tag="KC089_28685"
     ncRNA           complement(784..921)
                     /ncRNA_class="other"
                     /locus_tag="KC089_28685"
                     /product="RtT sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00391"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="rtT sRNA, processed from tyrT transcript; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00391"
     gene            complement(965..1052)
                     /locus_tag="KC089_28690"
     tRNA            complement(965..1052)
                     /locus_tag="KC089_28690"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1016..1018),aa:Ser,seq:gga)
                     /name="tRNA-Ser"
     gene            complement(1198..1875)
                     /locus_tag="KC089_28695"
     CDS             complement(1198..1875)
                     /locus_tag="KC089_28695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="QUF98509.1"
                     /translation="MSTPANFNGARPVIDVNDTAMLLIDHQSGLFQTVGDMPMPELRAR
                     AAALAKMASLAGIPVITTASVPQGPNGPLIPEIHENAPHAKYIARKGEINAWDNPEFVA
                     AVKATGRKTLIIAGTITSVCMAFPAIAAVADGYKVFAVIDASGTYSKMAQEITLARVVQ
                     AGVVPMDTAAVASELQRTWNRPDAAEWAEVYTKVFPAYQLLIESYSKAQDVVKNNEQLD
                     SQR"
                     /name="isochorismatase family protein"
     gene            complement(1894..2754)
                     /locus_tag="KC089_28700"
     CDS             complement(1894..2754)
                     /locus_tag="KC089_28700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="QUF98507.1"
                     /translation="MKQITGVYTAPAQHWVGDGFPVRSMFSYQTHGQQLSPFLLLDYAG
                     PYTFPAGSEKRGVGEHPHRGFETVTIVYAGEVEHRDSTGRGGVIGPGDVQWMTAGAGIL
                     HEEFHSEAFTRSGGELKMIQLWVNLPAKDKMATPGYQSITAGTIPTVALANGAGQVRVI
                     AGQYDDVSGPAHTFSPLNVWDLQLNQGHDLTLRQPEGWSTALVVLEGEVIINGSESARE
                     GQLAVLSQAGDAVHLEATAPAKVLLMAGEPLQEPIVGYGPFVMNNKTQIAEAVRDFNSG
                     RFGQI"
                     /name="pirin family protein"
ORIGIN
        1 tgattgaggc cgaggcggcg cagcaggcgg tcgagacgct gcgcgccgag ccgcgcggta
       61 gcgtcaggat cacctgtccg gtcaccttgc tgcatgtcca tatcggaccg atgctggcgc
      121 gatttatggc gcgctatcct ggggtaacgc tgcatcttga ggcgaccaac cgccgggtgg
      181 atgtggtcgg ggagggcgtt gatgtggcga tccgcgtccg tccccggccc atcgaggata
      241 gcgacctggt gatgcgcgtg ctggcggacc gcgggcaccg gctggtagcc agcccggatc
      301 tcatttcccg gctcggacgt ccgcaggcgc cgtccgagct gagcgcctgg ccgggcctca
      361 gcctgggtgc gaacaagcat cagcataaat ggcagctcac cgggcccggg ggagcgagag
      421 cggaagtgta tttcacgccg cgaatggtga ccaccgatat gctggcgctg cgcgaggcgg
      481 cgatggccgg cgtaggcgtg gtgcagcttc ctttattaat ggtgcgcgat cagctggcgt
      541 caggtgaatt agaggtggtt ctggacgagt ggcagccgcg gcgggaagcg atccatgcgg
      601 tatttgcctc acggcgcggg ctgctgccct ccgtcagggc gctggtggac tacctcagcg
      661 aagagtatca gcggatggag gaggattagc ttcgggattg gcttttctcg aggggctccc
      721 ccccccggca gagaatataa aagaaaagag cccgtgcttg cgtacaggct ctcatcttga
      781 atatggcggt gaggggggga ttgactcgct tcgctcgccc ctgcggggca gcccgctcgc
      841 aggctcgcgg tctgtccaac tggctgcgcc agttgtcgaa ccccggtcgg gggttctcat
      901 ccccccctgt ggagaatata aaagaaaaga gcccgtactt tcgtacaggc tctcatctcg
      961 aatatggcgg tgaggggggg attcgaaccc ccgatacgtt gccgtataca cactttccag
     1021 gcgtgctcct tcagccactc ggacacctca ccatattgtc ttgctgctca ccttgggtgg
     1081 gcaacggggc gctactatag ggagttgcgt taaaacggtc aagcatattt tcttctttct
     1141 ttgccgttcg ctcacgcaat gaacaatgcc ccgctgcggc tcagcggggc gggcgtttta
     1201 gcgctgggaa tccagctgtt cgttattctt cacgacgtcc tgcgctttgc tgtagctttc
     1261 gatcagcagc tggtaggccg ggaagacttt ggtgtacacc tccgcccatt ctgcggcgtc
     1321 cgggcgattc caggtgcgct gcagctcaga ggcgacggcg gcggtatcca ttggcactac
     1381 gccggcctgt accacgcgag ccagggtgat ctcctgcgcc attttgctgt aggtgccgga
     1441 agcgtcaatc acggcaaaca ctttataacc gtcggcgaca gcggcgatag ccgggaaggc
     1501 catgcagacg ctggtgatgg tcccggcgat aatcagcgtt ttacggccgg tcgctttcac
     1561 cgcggcgacg aattccgggt tatcccaggc gttaatctca cctttacggg cgatgtattt
     1621 cgcatgcggc gcgttttcat gaatctccgg gatcagcgga ccgttcggcc cctgcggcac
     1681 ggaggcggtc gtgatcaccg ggatcccggc aagcgacgcc atcttggcca gcgcggcggc
     1741 gcgagcgcgc agctctggca tcggcatatc gccgacggtc tggaacagac cgctctgatg
     1801 gtcaatcaac agcattgcgg tatcgttaac atcaatcacc ggacgagcac cgttaaagtt
     1861 agcgggagta gacatagtat tcacctcaat cagttagatt tggccaaagc ggccgctgtt
     1921 aaaatcgcgt acagcttctg cgatctgcgt tttgttattc atgacaaacg ggccatagcc
     1981 cacaatcggc tcctgtagcg gttctccggc catcagcaga acttttgccg gggcggtcgc
     2041 ctccagatgc actgcgtcac ctgcctggct caggacggcc agctggcctt cgcgagcaga
     2101 ttcggaaccg ttaatgatca cttccccttc cagcaccacc agcgcggtac tccagccctc
     2161 cggttggcgc agcgtgaggt cgtgcccctg attcagctgc agatcccaca cgttaagcgg
     2221 tgagaaggta tgggccgggc cgctgacgtc gtcatactgg ccggcaataa cccgaacctg
     2281 tccggcgccg ttcgccagcg ccacggtggg gatcgtcccg gcggtaatgc tctggtagcc
     2341 gggggtcgcc attttgtctt tcgcgggcag gttgacccac agctggatca tcttcagctc
     2401 gccgccgctg cgggtgaagg cctccgagtg gaactcttcg tgcaggatcc cggcgcccgc
     2461 cgtcatccac tgcacgtcgc ctggaccaat caccccgccg cgtccggtgg agtcgcgatg
     2521 ctctacttca ccggcgtaga cgatggtgac ggtttcaaat ccgcgatgcg gatgctcacc
     2581 gacgccgcgt ttttcgctgc ccgccgggaa ggtgtacggc ccggcatagt cgagcagtaa
     2641 gaaggggctc agctgctggc cgtgcgtctg ataggaaaac atcgagcgaa ccgggaagcc
     2701 gtcgcctacc caatgctgcg caggcgcggt gtagactcct gtgatctgtt tcatggcttt
     2761 ctcctgtgta tcggtatctg atgtgaataa gcttatatcc gggacgacgt atgcggtagt
     2821 gtgcaaaaat gacctatact gttccaaaaa tggaacaatg gaggaaggat gcaggatctc
     2881 aatgacttcg cctggtttgt ccaggtggta gaccatggcg gtttcgccgc ggctgggcga
     2941 gcgcttgacc agccgaaatc caaactcagc cgtcgcattg cgcaactcga ggagcggttg
     3001 ggcgtgcgtt tgattcagcg aaccacccgt cagttcgcgg tcaccgaggt cgggcagacc
     3061 ttttatcagc attgcaaagc gatgc
//
