LOCUS       CP068407                1240 bp    DNA     circular BCT 25-FEB-2021
DEFINITION  Serratia marcescens strain MRSN696556 plasmid unnamed8, complete
            sequence.
ACCESSION   CP068407
VERSION     CP068407.1
DBLINK      BioProject: PRJNA692233
            BioSample: SAMN17317342
KEYWORDS    .
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Corey,B.W., Lebretron,F., McElheny,C.L., Lovleva,A., Ong,A.C.,
            Maybank,R., Margulieux,K., Cybulski,R.J., Kwak,Y.I., Mc Gann,P.,
            Doi,Y. and Bennett,J.W.
  TITLE     KPC-76 is a KPC-2 variant carried by a Tn4401 transposon and
            conferring resistance to ceftazidime/avibactam in Citrobacter koseri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Corey,B.W., Lebretron,F., McElheny,C.L., Lovleva,A., Ong,A.C.,
            Maybank,R., Margulieux,K., Cybulski,R.J., Kwak,Y.I., Mc Gann,P.,
            Doi,Y. and Bennett,J.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2021) Multidrug-Resistant Organism Repository and
            Surveillance Network (MRSN), Walter Reed Army Institute of Research,
            503 Robert Grant Avenue, Silver Spring, MD 20910, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 19-AUG-2020
            Assembly Method                   :: Unicycler v. V0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100X
            Sequencing Technology :: Oxford Nanopore Minion/Illumina Miseq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/21/2021 13:26:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,633
            CDSs (total)                      :: 5,506
            Genes (coding)                    :: 5,342
            CDSs (with protein)               :: 5,342
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 164
            CDSs (without protein)            :: 164
            Pseudo Genes (ambiguous residues) :: 0 of 164
            Pseudo Genes (frameshifted)       :: 47 of 164
            Pseudo Genes (incomplete)         :: 116 of 164
            Pseudo Genes (internal stop)      :: 12 of 164
            Pseudo Genes (multiple problems)  :: 10 of 164
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="MRSN696556"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="unnamed8"
                     /geo_loc_name="USA: Texas"
                     /lat_lon="29.46 N 98.41 W"
                     /collection_date="17-Oct-2019"
                     /collected_by="Brooke Army Medical Center"
     gene            98..607
                     /locus_tag="JMM80_28165"
     CDS             98..607
                     /locus_tag="JMM80_28165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000634347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="QSD90180.1"
                     /translation="MIVASEHQAKLRQKEIQEIDKKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELVRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSGE
                     ESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 aggacacagc tggtgtccgc atgtggctgg acataggaca ccacaagtcc tatgatggga
       61 caaaaatgtc ctatcaaaaa gacaccgagg gataaagatg atcgtagctt cagaacacca
      121 agcaaagcta aggcagaaag aaatacagga aatcgacaag aaggcatcta aagagcacga
      181 ggaggcaaag aagaacagta acttcactca gacataccca aagggctggc aacgcattag
      241 agagcttgtg agggacaaac agggtgctgc cgctataggt ctttactcat ttttcgctga
      301 acacatagat cctacatgcg gtgcagtggt ctgcgatcag cagtttttag ctaatcagat
      361 gggtgtttct actcgaacaa ttcgtcgttg gttagattat ttggaggaga aaggtgcttt
      421 ggtaagaata ccagttgctg gaaaggtttg tgcttacgct ttagatcctc acgaagtctg
      481 gaagggatat aacacatcaa aagactactc agcctttgtt accaagacat tagtgaacaa
      541 ggatggagaa ataaaacgcc ggataatggc tatgttttcc ggagaggaga gcggtcaaga
      601 gcagtagcga agcgactctt gacggctcgg aacgaccccc accctcagaa agggggatgg
      661 ttcgccacag cgagccatcc ccataataag ccgcccttta agcagtagat cccataaata
      721 aataaaacag cacatcactt ttgtaatgtg cggcattcct ttgggactaa aagaagttag
      781 ccaggaatgt aatacagaaa ctttaccgac aaggaggtca tcatgatcac gtcaacaatc
      841 atcacaatca tcggcttaat tgggagtctc ataacgattt accgagagat atacccgaag
      901 gataagcact aattagccag tatacactcc gctagcggag tgactggttc agggcttcgc
      961 cccgaaaccc ctgaaaaccg tcaatcatgg tgatggctca ctacgcgagc catcaccaga
     1021 tacaaggtta aacgggcatt ttgatcgtca aggtcaagcc gctaacgcgg tcgcctatgg
     1081 cgaaccctga ccctcaaaat gcccgaccgg agggagggag ctaccttgaa ctttggtgtt
     1141 gtctgttggt tttcatagaa gagaatagag ataaataata agttattgat ttttatagtt
     1201 ttggtttttt ctgataggac acagctggtg tccgcacgtg
//
