LOCUS       CP067956                1283 bp    DNA     circular BCT 02-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-4771 plasmid pC1122_5, complete
            sequence.
ACCESSION   CP067956
VERSION     CP067956.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN15869095
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1283)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C1122
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 164x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 18:08:08
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,577
            CDSs (total)                      :: 5,453
            Genes (coding)                    :: 5,344
            CDSs (with protein)               :: 5,344
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 45 of 109
            Pseudo Genes (incomplete)         :: 55 of 109
            Pseudo Genes (internal stop)      :: 21 of 109
            Pseudo Genes (multiple problems)  :: 11 of 109
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-4771"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC1122_5"
                     /geo_loc_name="USA: Midwest"
                     /collection_date="2017"
                     /collected_by="MDRO network"
     gene            complement(join(1118..1283,1..704))
                     /locus_tag="JJ572_27885"
     CDS             complement(join(1118..1283,1..704))
                     /locus_tag="JJ572_27885"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMK30164.1"
                     /translation="MLLNKDRFGKLTSKSLDSIAALGLREANAELPCLFRNNCTEISAK
                     TPLEPLSPLAFELSTNLKKSASALAWNVQYFVDTYGLSNVGFLTLTFRDHVTDPKEAQR
                     RFHSLKTHVLSKRYRAYIRVMEPMKSGRIHYHLLVALHSDIRTGFDFPAVYRQEYSSAN
                     KAIRSEWSFWRKTAPKYGFGRTELMPVRSNSEGIGRYVGKYISKGIESRTEQFKGVRLV
                     EYSRKAKIASTRFQFVSDGSYEWRRKLSIFVHYIADNMGCEPTFDGLRRVLGSRWSYHW
                     RDFIMNIE"
                     /name="hypothetical protein"
ORIGIN
        1 aagcgcgtag aagcgatttt agccttgcgg gaatactcta ccagcctaac gcccttaaat
       61 tgctctgtac gcgattctat gcccttagaa atgtatttac ctacgtagcg accaattccc
      121 tcagaatttg accggacggg catcaattca gtacgaccga atccatattt aggcgcagtc
      181 ttacgccaga atgaccactc agaacgaata gccttgtttg cggaggaata ttcctggcga
      241 taaacagcgg ggaaatcgaa tccggtgcga atgtcggagt gcagtgcaac gagtaagtga
      301 tagtggatgc gccctgactt cataggctcc ataacacgga tgtaagcgcg gtatcttttg
      361 ctcaaaacat gggttttaag ggagtgaaaa cggcgctgcg cctctttggg gtcggtcaca
      421 tggtcacgaa aggtaagggt taaaaatcca acgtttgaaa ggccgtaggt atcgacaaaa
      481 tactgtacgt tccacgccag agccgaggca gattttttga ggtttgtaga aagctcaaaa
      541 gccagaggtg acaagggttc gagaggtgtt tttgcagaaa tctcggtgca gttgtttcta
      601 aatagacaag gaagctcggc attcgcctcg cggagtccga gagcagcaat ggaatcgaga
      661 gattttgacg tgagtttgcc aaagcggtct ttgttgagta acatccagtt gtccagttaa
      721 gttgagtaca cattgagccg tagaaatgct tactgaccat aaacccctga tgttagcgca
      781 tcgggggttt tgctttttgg ccatcggggc aacgttacag cgattcggca acgtggtcaa
      841 acgggggtca ctcatggtgt tgcagattag tcagtggtcg gaacccctta aaacccgtct
      901 tacaggtgtg tgtcacctgc tgcgcacgta acacacacca gcaagaagtg tctttaatcg
      961 gggtgtcgta caaacactaa atcggaaccc taaagggacc cccgatttag catttgacga
     1021 gttcagcaac ggtgaacgct gacagattta caatctggct gcgtgaggcg gaaagtgttc
     1081 catattggaa caagagtcca ctattaaaca gcgtggacta ctcgatgttc ataataaaat
     1141 cacgccagtg atacgaccag cgagagccga gaacacggcg taagccgtca aaggttggtt
     1201 cacagcccat attatccgcg atgtagtgaa cgaatatcga aagtttgcga cgccactcat
     1261 aagacccgtc agaaacgaac tgg
//
