LOCUS       CP067930                5926 bp    DNA     circular BCT 02-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-3187 plasmid pC241_3, complete
            sequence.
ACCESSION   CP067930
VERSION     CP067930.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN15868960
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5926)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5926)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C241
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 273x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 17:35:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,212
            CDSs (total)                      :: 5,088
            Genes (coding)                    :: 5,023
            CDSs (with protein)               :: 5,023
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 28 of 65
            Pseudo Genes (incomplete)         :: 36 of 65
            Pseudo Genes (internal stop)      :: 12 of 65
            Pseudo Genes (multiple problems)  :: 11 of 65
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5926
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-3187"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC241_3"
                     /geo_loc_name="USA: South"
                     /collection_date="2016"
                     /collected_by="MDRO network"
     gene            1..192
                     /locus_tag="JJ437_26030"
     CDS             1..192
                     /locus_tag="JJ437_26030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UMJ79235.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLNASQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            192..593
                     /locus_tag="JJ437_26035"
     CDS             192..593
                     /locus_tag="JJ437_26035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="UMJ79236.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHLSGQVSEQRDTASADQNEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="DNA-binding protein"
     gene            complement(1333..1578)
                     /locus_tag="JJ437_26040"
     CDS             complement(1333..1578)
                     /locus_tag="JJ437_26040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMJ79238.1"
                     /translation="MTHLKLTPAEEKRLADAFVAQALAMGLKGNKSLPKAVKQQVRERV
                     LRAIQDERESRLAKKMRREKYEAAEDTFTWQPQRRR"
                     /name="hypothetical protein"
     gene            2117..3802
                     /locus_tag="JJ437_26045"
     CDS             2117..3802
                     /locus_tag="JJ437_26045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000012966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cloacin"
                     /protein_id="UMJ79237.1"
                     /translation="MSGGDGRGPGNSGLGHNGGQASGNVNGTSGKGGPSSGGGTDPNSG
                     PGWGTTHTPNGDIHNYNPGEFGNGGSKPGGNGGNSGNHSGSSGGGQSSATAMAFGLPAL
                     ATPGAEGLALSVSGDALSAAVADVLAALKGPFKFGLWGIAIYGVLPSEIAKDDPNMMSK
                     IMTSLPADTVTETPVSTLPLEQATVRVRQRVVDVVKDERQHIAVVAGRPMSVPVVDAKP
                     TKRPGVFSVSIPGLPSLQVSVPKGVPAAKAPPKGIVAEKGDSRPAGFTAGGNSREAVIR
                     FPKETGQKPVYVSVTDVLTPAQVKQRQEEEKRRQQAWDAAHPEEGLKREYDKAKAELDA
                     EDKNIATLNGRITSTEKTIPGARTAVQEADKKVKEAEANKDDFVTYNPPHEYGSGWQDQ
                     VRYLDKDIQNQNEKLKAAQASLNAMNESLSRDKAALSGAMESRKQKEKKAKDAENKLNE
                     EKKKPRKGTKDYGHDYHPAPKTEDIKGLGDLKKGTPKTPMQGGGGRRKRWVGDKGRKIY
                     EWDSQHGELEGYRASDGEHLGAFDPKTGKQVKGPDPKRNIKKYL"
                     /name="cloacin"
     gene            3812..4069
                     /locus_tag="JJ437_26050"
     CDS             3812..4069
                     /locus_tag="JJ437_26050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010891189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cloacin"
                     /protein_id="UMJ79232.1"
                     /translation="MGLKLDLTWFDKKTEEFKGEEYSKDFGDDGSVIESLGMPLKDNIN
                     NGCFDVKNEWVSLLQPYFKHKINLSDSSYFVSFDYRDGNW"
                     /name="cloacin"
     gene            4154..4303
                     /locus_tag="JJ437_26055"
     CDS             4154..4303
                     /locus_tag="JJ437_26055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010891188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="UMJ79233.1"
                     /translation="MKKVKAIFLFILIVSGFLIVACQANYIRDVQGGTVAPSSSSELTG
                     IAVQ"
                     /name="colicin release lysis protein"
     gene            5298..5447
                     /locus_tag="JJ437_26060"
     CDS             5298..5447
                     /locus_tag="JJ437_26060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMJ79234.1"
                     /translation="MPSEHDEQRDATDTQLPGEYDLFDLMAQVTEENLHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     BGC             1..5926
                     /name="RiPP-like"
                     /gene="RiPP-like"
                     /tool="antismash"
     Typing          5090..5305
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="83.258"
                     /coverage="100.0"
                     /evalue="7.539999999999999e-48"
     Typing          4541..4726
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.617"
                     /coverage="99.0"
                     /evalue="6.160000000000001e-73"
ORIGIN
        1 atgacgaaac aacagaaaac agcgctgaac atggctaaat tcatccagaa tcagtctctg
       61 ctcctgctgg agaagcttaa cgagcttgat ctcgatgttg aggcggacct ttgtgagaaa
      121 ctccacgatg atgcggaaca tcttttccgt acactgtcct cgagactgaa tgcatcacag
      181 gatggtaact gatggccaga gtatctatta gtgaggctgc cagactgacg ggtaagagta
      241 gaacaacgct gcacaggtta attaaagcag gtgacttgtc cacctgtagc ggtgaacgta
      301 atgcaaaaat ggtagatact tcagagcttt tgcgtgtctt cggtcccttt gagcaaccta
      361 agggtgaaca cctttctgga caggtctctg aacagcgtga tacagcctct gctgaccaga
      421 atgaacaggt gattcgtcat ctgaaacagg agattgaaca cctgaacacc ttacttttgt
      481 ccaaggattc gcacattgac agcctgaaac aggccatgct ccttcttgaa aatcaccagg
      541 caaaattaac tgaatccccg gcgccatggt ggaaattctg gaagaaatcc tgatcctgcc
      601 atggttgagt tttcctctcc ggccattccg gggagttcct gaaccttccc agatatcgcc
      661 agatccggga acactcctca ccacgaaaaa tacccacaca ccacgcaaaa ttaaaatttt
      721 gcagataact ccttattatc agttggttag gttttattaa attacgctgt attaccttct
      781 gtaaggtaaa tccaagtcgt cggcgattcg cgtacgactt gccgacgact cgtcatagag
      841 tcatcgacga ctcactccat actatcagta acttatgacg acttgactct agagttgagt
      901 cgttcatttg gtgttttttt gaccttggtg actctagagt caagtcacga gtcgaatcgc
      961 cggtgaatcg tgtgctaagt cgtccggtga cttgccatca cgtcattgcc ggctgtcgct
     1021 gaaccggatt cctgaacgtg ctgaaaacgg gttttccggc tgcgccggca acgcctcacg
     1081 gccacgcaat aaattgcgtc cccgttcacc gttttcgggt aagaagaaca tcggaaacag
     1141 gacttacccc gactgaatgg cgtgaatttc cgcgctatgc acttgcgcgc atactcatgc
     1201 atgccgtaaa aacagagcct gcgcgtttct ggcgggtttt cgggtggttt gttgcctgtt
     1261 ttgccggttt tccgtcagaa acgcgctgag ggtgcctgag gcggtgcggg caacggatgt
     1321 tatggtaaat cgtcaacgcc ggcgctgcgg ctgccaggtg aaggtgtctt ccgccgcctc
     1381 atacttctcc cggcgcattt tcttcgccag cctggattca cgttcgtcct gaatggcgcg
     1441 aagcaccctt tcccgcacct gctgttttac cgcctttggc agtgatttat tccctttcag
     1501 gcccatggcc agcgcctggg cgacaaaggc gtccgccaga cgcttctctt cagcgggggt
     1561 gagtttcagg tgtgtcaggg gtttgacgct caacggaacg gtttcacacg ttaaggactt
     1621 tttgtccgat aaatcagaat attgtggaca gtgaaaaatg tgcctaaagc ggtgtgtttt
     1681 taatcggcaa atggcactta atggacacca ttgtccatta atcgattttt cagacgactt
     1741 ctctcgccta acgtgagttt tcgttcgact gagcatcagc cccctgtcat ggtggcctcc
     1801 gggtgtctct gggttcctga acagcttaat tggtagtcct ctcctcattc cagtccgctt
     1861 tcagatatgc atgtacttac ataaaagcaa gtgtgatgaa tatcgcaaat aatgaaattt
     1921 gttgccgggg gaaactttcg ggaaaagacg caacctgctg acaggcggct ctggccgctt
     1981 ttttgtgcct gaagatgaga actaatctca tatattgaca cctgaaaaca gcaagggtaa
     2041 ggtaataatt atactgttca tatatacagt atattggttt taatttattg ttttaaatgt
     2101 caaagaggat aacgatatga gtggcggaga cggacgaggt ccgggtaatt caggtctggg
     2161 acacaatggt ggtcaggcca gtggaaatgt gaacggtacg tcaggtaaag gtggcccttc
     2221 atctggtggt ggtacggatc caaacagcgg gccgggctgg ggtacgacgc atacacctaa
     2281 cggggatatt cataactata acccgggtga gtttggtaac ggcgggagta aacccggtgg
     2341 taatggcggt aacagcggca atcatagcgg gagctctggt ggcggacagt cttcagccac
     2401 cgcgatggcc ttcggtctgc cagcccttgc cactccgggg gctgagggac tggctttatc
     2461 cgtctctggc gatgcgttgt cggccgctgt tgctgatgtg ctggccgccc tgaaaggtcc
     2521 gtttaagttt ggtctgtggg ggatagcgat ctacggtgtg ctgccttctg agattgcaaa
     2581 agatgatccg aacatgatgt caaaaattat gacgtcatta ccggccgata cggtgacgga
     2641 gactccggta agtactttac cactggagca ggcgacggtt cgtgtcagac aacgggttgt
     2701 ggatgtggtg aaggatgagc ggcagcatat tgcggttgtc gcgggtcggc caatgagtgt
     2761 tcctgtggtg gatgcgaaac cgacaaaacg tccgggggta ttcagtgtgt cgattccggg
     2821 tctcccgtct ctgcaggtga gcgtaccgaa aggtgttccg gccgcgaaag ccccgccaaa
     2881 aggcattgtt gctgaaaaag gtgattcacg tccggctggt tttacggccg gtggtaactc
     2941 ccgtgaggcc gttattcgtt tcccgaaaga gaccggacag aagccggttt atgtgtcggt
     3001 gacagatgtt cttaccccgg cacaggtaaa gcagcgtcag gaggaagaaa agcgtcgtca
     3061 gcaggcatgg gacgccgctc acccggaaga ggggctgaaa agagagtatg ataaagcgaa
     3121 agctgagctg gatgccgaag ataaaaatat tgcgacctta aacggtagga ttacatcgac
     3181 agaaaaaacc attcctggtg caagaactgc tgttcaggaa gccgataaaa aggtgaaaga
     3241 agccgaggca aataaagatg attttgtgac ttacaacccg cctcatgaat atggctccgg
     3301 gtggcaggac caggttcgct atcttgataa ggatattcag aatcagaatg agaaattaaa
     3361 agcagctcag gcatctttaa acgcaatgaa tgaatcctta tccagagata aggctgcgct
     3421 ttccggggcg atggagagcc ggaaacaaaa ggagaaaaaa gcgaaggatg cagaaaataa
     3481 attaaatgag gaaaagaaaa aacctcgcaa gggaactaaa gattacggcc atgattatca
     3541 tccagccccg aaaactgaag acataaaggg gctaggtgac ctcaaaaaag gtacacctaa
     3601 aacaccaatg cagggaggtg gaggtaggcg taaacgctgg gttggtgata aaggtcgtaa
     3661 gatttatgaa tgggattccc agcacggtga gcttgaaggg taccgcgcca gtgatggcga
     3721 acacctcggc gcattcgatc caaaaacggg taagcaggtt aaagggccgg atccaaaaag
     3781 aaacattaaa aaatatcttt gagaggtaag tatgggactt aaattagatt taacctggtt
     3841 tgataagaaa actgaagagt ttaaagggga agagtattct aaagactttg gtgatgatgg
     3901 ttctgtcatt gaaagtctgg ggatgccttt aaaggataat attaacaatg gttgttttga
     3961 tgtgaaaaat gagtgggttt cattattgca accctacttt aaacataaaa tcaatctttc
     4021 tgatagttca tattttgttt catttgatta tcgggatggc aactggtaat aaaaatttat
     4081 caaggatgag ttgaaataca gacttccggt attcagggat gaatgctgga gtctttaaat
     4141 acagggaaag tatatgaaaa aggtaaaggc tatttttctt tttatattga tagtttctgg
     4201 ctttcttatt gtcgcatgtc aggcaaacta tatcagggat gttcagggcg ggacggtggc
     4261 accatcatcc tcctctgagc tgacgggaat tgcggttcag tagaaaagat caaaggatct
     4321 tcttgagatc ctttttttct gcgcgtaatc tgctgcctgt aaacgaaaaa accacccggc
     4381 aaggtggttt ttcgaaggtt cagcaaaccg gcaagtttct gaaccgtggt aacagtcttg
     4441 tgcgagacat gtcaccaaat ctgtccttcc agtgtagccg cagtcaggcc accacttcaa
     4501 gaactcttcg aaacatatct cgcacatttc agttaccagt ggctgctgcc agtggcgatt
     4561 tatcgtgtct ttccgggttg gacccaagag aacagttacc ggaacaggcg cagcagtagg
     4621 gctgaaaggg gggttcctgc atacagcccg gcccggagcg aactgcctaa gttggtccga
     4681 gataccagaa gacgtgagct atgagaaagc gccacgtgtc ccgtaaggga gaaaggcgga
     4741 aaggtatccg gtaaccgata tggcgggaac gtgggggcgc aggagggagc gattcaccgg
     4801 aaacggtgat gatctttaag ccacgtcggg tttcgtcacc gctggcggat tcatggttga
     4861 gccttacggc tcccacagat gcacaaaaaa agtgtctgtt atgtgaactc cgtcaggggg
     4921 gcggagccta tggaaaaagc gcctgcggcg cggccttttc gtcctttctt tttttgcgca
     4981 catgttctgt gatgcgttat cccctgattc tgtggataag gtatgagtct gttgtgtgag
     5041 cgtaggcaac gcccgccgca gccgaacggc cggagcgtga gcgaccgagt gagcgaggag
     5101 gcgtcatttc cccggaaccg gcattcagca cttacgcgtt ccggccacat ttttctcctg
     5161 ccacatgaag cacttccctg gtaaccacgc tcatgccaac ataggaagcc agtacacact
     5221 ccgctagcgc tacgtgactg gttcagggct gcgccccgaa acccgctaac aacctctcag
     5281 ctactggata tcaccccatg ccatctgaac atgatgaaca acgggatgct actgatacgc
     5341 agcttcccgg cgaatatgac ctttttgatt taatggcgca ggttactgaa gagaacctgc
     5401 atgcccctgt ggattctggg ccgcctgtcg gccgggaagc gttatagctt tttcgcttgc
     5461 ccgcgtacgt ggtaatacgc cggtattaca ttttatttct ttattttcat gtaattacag
     5521 gtgattgtaa tacgttgcgt attacataaa taaacggaga tttcagtttt taccttttaa
     5581 ttcatgcagt tgcgatgaaa atcgcggctg cgttaggtgt atgaccattt aaggggtaaa
     5641 aaattatcat tctggccgcg tgatctgcgc aggttaagga gcatcggcga cgaaaaagcg
     5701 tctttaactg cttcgttcat gcttgcatga acggatgatt tttccagact acaggtaaac
     5761 tacaggaaga ctacaaaagt tgatgattta atactgattt ttagtgcgat gactacagat
     5821 aaactacaaa ataactacag gattacctca gatccgttct ctgaaccatt cgtacatccg
     5881 acccccttac cggtttacac tgagcactga tgctctgagg gccctt
//
