LOCUS       CP067865                2058 bp    DNA     circular BCT 02-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-3214 plasmid pC267_3, complete
            sequence.
ACCESSION   CP067865
VERSION     CP067865.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN15868980
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C267
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 174x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 15:35:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,311
            CDSs (total)                      :: 5,188
            Genes (coding)                    :: 5,104
            CDSs (with protein)               :: 5,104
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 42 of 84
            Pseudo Genes (incomplete)         :: 35 of 84
            Pseudo Genes (internal stop)      :: 21 of 84
            Pseudo Genes (multiple problems)  :: 14 of 84
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-3214"
                     /isolation_source="wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC267_3"
                     /geo_loc_name="USA: South"
                     /collection_date="2016"
                     /collected_by="MDRO network"
     gene            1..192
                     /locus_tag="JJ457_26550"
     CDS             1..192
                     /locus_tag="JJ457_26550"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMI49841.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     gene            516..1505
                     /locus_tag="JJ457_26555"
     CDS             516..1505
                     /locus_tag="JJ457_26555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UMI49842.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     Typing          complement(1232..1423)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 atgatcgtca gactggataa ccggctgttt gagattctcg atgagatggg tgcgcatgtg
       61 gatcgggaaa tgttcatggc ggcctatgcg cagcggaagg ccgaaaaaga aaatgatccc
      121 cggcatatcc gtcaacggaa actgaccagg ttggctcatg atttgatgtc agaatcggac
      181 cctgaattgt gagcctcgcg tgcgcgcgag ggaaatcggt cagaaaatgg ccggagtctc
      241 gtgcgcgcga tccttgtatt tatacttaag ggataactct ggcgtcaaaa aacgccgcca
      301 gcccttgtgc cgcaagggtt tgagtgtgat ttgcctgaaa atggttttgg aagtattctg
      361 tcgggagtgg tcgcagaaaa aagcgacccc cgcaactgcg ctaacagttc gggggtgtga
      421 ccacctgtag gaattcgaat ttggacacga caacacaggt gatatggcaa tgataacacg
      481 tcaaatgagc catcgcccag catggggcgg tgtgcatgca aaatcctgaa ctccagaacc
      541 taactgacta ctccccctca gatgcgccgt gggacgctca cagaagcgtt tctgacgacg
      601 tgggagggat ttacctgctt gcggctgaat atgagcgcta cggggcgcgt atggcctcct
      661 gtggcggttt actgaggttt gggtggtcta ccctcaaaga aaccggagaa acgcgcctga
      721 ggctgcgtga ggcgcatttc tgccgtgtcc ggcactgtcc tgtctgccag tggaggcgct
      781 ccctgatgtg gcaagcccgt ttctaccagt ccctgccgcg tatcgtggcg gattaccccg
      841 attcccgctg gatgtttctg accctgaccg tgcgcaactg cgcgatcgag gagctgggcg
      901 agacgctgag ccggatgaac acggctttcc agcgactgaa ggaccgtaaa gagttccgac
      961 cagttcaggg ctggatacgc accacggaag tcacccgcgg cagtgacggc agcgcacacc
     1021 cgcacttcca caccctgatg atggttccgc cgggcatgct taacgggaag agttacgtca
     1081 ggcatgaacg ctgggttgag ctgtggcgtg agtgcctgcg ggtcagttac gatccgaatg
     1141 tcgatgtccg ggcagtgaaa ccccgcaagc cgaaggacgg cgaatcgctg gcctgcgcga
     1201 ccgccgaact ggtgcgcggc gcagtggccg aaaccctgaa atattccacg aagccggccg
     1261 acatggtggc cgatcctaaa tggttcctcg aactgacccg ccagacgcac aagcgccgct
     1321 ttgtggcgac cggcggcgca ctcaaagacg tgctgaaact cgatcaggaa accgacgccg
     1381 acatggtgat cggggatgat atttccgagg gcgatgatga cggttcccgc atcgcgttcg
     1441 agtggaagac cgaggtcaaa aagtaccggc gttcgccgac gaaagataaa accgaatcag
     1501 actaacaggg tgtcggggct gcgccctgac catgagggct ttgggcatcc gtcaccttgg
     1561 tggcggtgta ccaaagtcac atcttgtccg attgatttta ctccgatgca ggatagggct
     1621 aacgccgcaa agtgacgtca ctcgattact gagttcggat tccgaacctg ggtttttctt
     1681 ccggtaattt tccggaaggc gcgcttagta gtttctcatc tggcgatgag aaacgcgcgg
     1741 tggggcaagc ccacgaaaaa caaaaactga taacggacaa gatgtgtttt tggagtaccg
     1801 ccatcacgat gccggtacca aaaacgatcc gtcagggctg cgccccgaca ccctgccaac
     1861 acctcacgcc gccagattaa aatctgtcag cgttcgccgt tcccgaaatc gtcaaacgct
     1921 aaatcgcggg gtcccgctgg cttgccagtg ggttccgatt tagtgattga cgacagcacc
     1981 cgtaaaatac ttacaggggg tggttgtgat cacgcagtga gcgcaaccac ctgataagcg
     2041 ttttttgagg gggtaggc
//
