LOCUS       CP067812                3866 bp    DNA     circular BCT 02-MAR-2022
DEFINITION  Klebsiella pneumoniae strain ARLG-3237 plasmid pC291_4, complete
            sequence.
ACCESSION   CP067812
VERSION     CP067812.1
DBLINK      BioProject: PRJNA658369
            BioSample: SAMN15868994
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3866)
  AUTHORS   Shropshire,W.C.
  TITLE     Highly Conserved and Distinct Accessory Genomes Drive Independent
            and Parallel Endemic Spread of Carbapenem-Resistant Klebsiella
            pneumoniae Clonal Groups 258 and 307
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3866)
  AUTHORS   Shropshire,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 340 Kingsland Street, Building 102,
            Nutley, NJ 07110, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Flye v. 2.7
            Assembly Name                     :: C291
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 198x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2021 15:27:01
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,487
            CDSs (total)                      :: 5,361
            Genes (coding)                    :: 5,235
            CDSs (with protein)               :: 5,235
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 53 of 126
            Pseudo Genes (incomplete)         :: 70 of 126
            Pseudo Genes (internal stop)      :: 18 of 126
            Pseudo Genes (multiple problems)  :: 15 of 126
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3866
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ARLG-3237"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pC291_4"
                     /geo_loc_name="USA: South"
                     /collection_date="2016"
                     /collected_by="MDRO network"
     gene            1..1404
                     /locus_tag="JJ471_27425"
     CDS             1..1404
                     /locus_tag="JJ471_27425"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMH85643.1"
                     /translation="MNEKSIEEILAERQLKEFNESKFGQFFNNQKLKEQELTYLNNKAL
                     DIVNEEDLFEIMSLIPQPFITEENKNVDVLSLIYNNFLENTEIPLTLPIFSFFSFLSAF
                     CVKNEITYTIPLSDEKSPLDTWITILAPSGSGKSFSNSQMKKVIPLGIDGKKVIEPNFV
                     KPNGPAKFIEDLSTLPKTKNGENQYGFWIEDEVSQMFKQVEQIGSPLSEIKEYLLKAYD
                     HEKLTRKSKKESIETKNIILTLLFINTFESYANNISNESMTDGLMRRFNLIYTEKDKAR
                     DFADYSLYNLKKLRDDSLQDTIADLFFSIKPDQNFTFSDNCFKLYQKYFKIFWHRKYKN
                     ILPEKENFYRTYMMQSWKFAVFYHLILKREGTEIQGDCLIYGMKISLLFANSVKKFFDF
                     KLNAKLTPKKKEKIKVDFTKYIEYLNENTDITLRTFCRKFNLKKADSISILKSLECNNY
                     QHKLIEELE"
                     /name="hypothetical protein"
     gene            1680..2024
                     /gene="mobC"
                     /locus_tag="JJ471_27430"
     CDS             1680..2024
                     /gene="mobC"
                     /locus_tag="JJ471_27430"
                     /inference="COORDINATES: protein motif:HMM:NF017524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="UMH85644.1"
                     /translation="MSYRERYQRKNFISLCLSDEELSEIENIADRLNMKRAAAAREILV
                     SNSKRLKSQIKKNDNSEILFLYSKISNNINQIAKKMNTNLDKFLSGNGEEFALLIEEIF
                     EDMEKLKNDT"
                     /name="mobC"
     gene            2014..3438
                     /locus_tag="JJ471_27435"
     CDS             2014..3438
                     /locus_tag="JJ471_27435"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UMH85642.1"
                     /translation="MIHKHIGGKKNQRSVKNSLDYLLRTNKPEEQKFVEILSQTNRSDI
                     ENFNEYIKEKNFKNPFITGVLSFEEKDIDPELKTKIMNEFEEMMFEGIEPENRPPVIWI
                     QHKDKNRLELNYTTFNSLMNKKHFQCYYHLSDKKLFNSFCEKINYENNISSVLDVQEHK
                     ARNTLVNTLNNKIPEEKKAVVEKLQEEILSKIITEEINNREELISFIQSKNIIINRVRE
                     NAISIKFDKADKPISLKGDIYEQNRDYKTYRTESTIDHRADQQYVENQLRHHRENFDTE
                     LKKRHSRNRTRFKPTQSKDQKNVEFRIKKANDSKNVRSEISDNNNVPFRNEPDIDFFHN
                     NKAIEDVSNEQNFTNDKTKPREEEPAKFDLSREIETVNTQQQFIRSRAEEAGRNQQQFR
                     KSLDKTEERSRVCRRSLHSIISNIRRYVRTFSIYTRQNQRRQEIEHRQKIFLEKLKNQQ
                     TENNQRSVVRSRFKPH"
                     /name="hypothetical protein"
ORIGIN
        1 atgaatgaaa aatcaattga ggaaatatta gctgaaagac aactaaaaga atttaacgaa
       61 tcgaaatttg gtcagttttt caataatcaa aaactaaaag agcaagaact aacatacctt
      121 aacaataaag cattagacat agtgaatgaa gaagatttat tcgaaataat gtcattaata
      181 cctcaaccat ttattacaga agaaaataaa aatgttgatg tattaagtct tatatataat
      241 aactttttag aaaatactga aataccttta acacttccta ttttttcatt tttcagtttt
      301 ttaagtgctt tttgtgttaa aaatgaaatc acatatacaa ttccactgag tgacgaaaaa
      361 tcgccgcttg atacttggat tacaatttta gccccaagcg gtagcggtaa atctttttca
      421 aactcacaaa tgaagaaagt tattccgtta ggaatagacg gaaaaaaagt tattgaacca
      481 aattttgtaa aacccaacgg accagcaaaa ttcattgaag atctttcaac actaccaaag
      541 acaaaaaacg gtgaaaatca atacggcttc tggattgaag atgaagtttc acaaatgttt
      601 aaacaggtag aacaaatcgg atctccatta tctgaaatta aagaatattt gttaaaagca
      661 tatgaccatg aaaaattaac aagaaaaagc aaaaaagagt caatagaaac caaaaatata
      721 attttaacat tattattcat taatactttt gaaagctatg caaacaatat ttcaaatgaa
      781 tctatgacag atggtttaat gcgtagattt aatttgatat acacagagaa agataaagca
      841 agagattttg ctgattactc attatataat ttgaaaaaat taagagatga ctcactacaa
      901 gatacaattg ctgatttgtt tttttcgata aaaccagatc aaaatttcac attttcagac
      961 aattgtttta aattatatca gaaatatttc aagatttttt ggcatagaaa atataaaaac
     1021 attttaccag agaaagaaaa tttttacaga acttatatga tgcaaagctg gaaatttgcc
     1081 gtattttatc atttgatatt aaagagggaa ggaacagaaa ttcagggtga ttgtttaatt
     1141 tatggcatga aaatttcatt actttttgct aacagcgtga aaaagttttt tgattttaaa
     1201 ttaaatgcaa agctaacacc aaagaaaaaa gaaaaaataa aagtagattt cacaaaatat
     1261 attgaatatt taaatgaaaa tacagatatt acattgagaa cgttttgtag aaaattcaac
     1321 ctgaaaaaag ccgattcaat atcaattttg aaaagtcttg aatgtaataa ttatcaacac
     1381 aaacttattg aggaactgga gtaattaaca agcgaatttt aaattgtgca atattcaaat
     1441 atattttcgc ttgttcaacc cctcaaaaat aataaagccc taacgggctt ttttattttc
     1501 tcgcggtttt ataaaaggtc aaattatatt cagttttgcc cttgacttaa ggttttaatt
     1561 tgttatctat gtaatagata gcaagttaga gtaatacttc gtattccttt acttgtgagg
     1621 ggttccccct tcaatcccct aaaatcaaaa tcaaaacctt aaaaccaaag gagttaaatt
     1681 tgagttaccg cgaacgatac cagagaaaaa attttatctc attgtgtttg agtgatgaag
     1741 aattatcaga gatagaaaat attgctgata gattaaatat gaaacgagca gcggctgctc
     1801 gtgaaatatt agtctcaaac tcaaagagac taaaatcaca aataaagaaa aatgataatt
     1861 ctgaaatctt gtttttatat tctaaaatct caaacaacat aaaccagatc gcaaaaaaaa
     1921 tgaatacaaa tcttgataag tttttgtcag ggaacggaga agaatttgca ttattaattg
     1981 aagaaatatt cgaagatatg gagaaattaa aaaatgatac ataaacatat cggaggaaag
     2041 aaaaatcaac gaagtgttaa aaactcactt gattatttat taagaaccaa caaaccagaa
     2101 gaacaaaaat ttgttgagat tttatctcaa acaaacagat ctgatattga aaatttcaac
     2161 gaatacataa aagaaaaaaa cttcaaaaac cctttcataa ctggtgtttt atcttttgaa
     2221 gaaaaagaca tcgatccaga actaaaaaca aaaataatga atgaatttga agaaatgatg
     2281 tttgaaggga tagaacctga aaaccgccca ccagtgatct ggatacaaca caaagataaa
     2341 aacagacttg aattaaacta tacaactttt aattctttaa tgaacaaaaa acatttccaa
     2401 tgttattatc atttatctga taaaaaatta tttaactcat tttgtgagaa aataaactat
     2461 gaaaataata tcagttctgt tttagatgtt caggaacata aagcaagaaa taccctcgtt
     2521 aacactttaa ataataaaat accagaagaa aaaaaggcag ttgttgagaa attacaagaa
     2581 gagattttat caaaaataat cacagaagaa ataaacaaca gagaagaatt aatatcattt
     2641 attcagtcta aaaacataat aataaacagg gttagagaaa atgctatatc aataaaattt
     2701 gataaggctg ataagcctat cagcttaaaa ggagatatat atgaacagaa cagagattac
     2761 aaaacttata gaacagaatc aacaatcgat cacagagcag atcagcagta tgtcgaaaac
     2821 caactcagac accatagaga aaattttgac acagagctta aaaaaagaca cagcagaaat
     2881 agaactcgtt ttaagccaac acagagcaaa gatcagaaaa atgttgagtt cagaattaaa
     2941 aaagcaaatg acagtaaaaa tgttagatct gaaatatcag acaataataa tgttcctttt
     3001 aggaatgaac ctgatattga tttttttcat aataataagg ctattgagga tgtaagcaat
     3061 gagcaaaatt tcacaaatga taaaacaaaa ccaagagaag aagaaccagc aaaatttgat
     3121 ctatcaagag aaattgaaac agttaataca caacaacaat ttattcgttc aagagctgaa
     3181 gaagctggaa gaaatcaaca gcaattcaga aagtcgcttg ataaaactga agagcgatct
     3241 agagtatgta gaagatctct acattcaatt atttctaata ttagaagata tgtcagaacg
     3301 ttttcaatct atacaagaca gaaccagaga agacaagaaa tcgaacacag acaaaaaatc
     3361 ttccttgaaa agctcaaaaa ccagcaaaca gaaaacaatc aaagaagtgt cgtcagaagt
     3421 cgatttaaac cgcattagaa ccgttctgaa cactcttcta acccactacg ataaaacctt
     3481 aaccgtgaac aagtgagaac cagccagagg ctggtttttg cttgtgaggg gttggcctgc
     3541 ccggtcaggg cggtttttct gtcataactt tgtcggagtt tttgacaaga acctgtctga
     3601 atatttttcc ttttcttatg acataaaaaa cagctttttt tctcaattgt gattttaaga
     3661 caagtgtcat aacttttgtc ataggttttg tcataaccct aaaaagtggt tgaatcctta
     3721 tgtatcaagg ctttatccat agtgtcatag tgtcatagtg tcataaatca aggtttaaaa
     3781 cgtgtcatag gtttttcaca aaaaccgttg acaatgtttt ttcatatgtt atatatgtaa
     3841 tataacccaa ataggagaaa ttaatt
//
